Wall clock time and date at job start Mon Mar 30 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31123 * 1 3 3 Br 1.89098 * 119.99965 * 2 1 4 4 C 1.50701 * 120.00453 * 179.97438 * 2 1 3 5 5 N 1.46902 * 109.47086 * 115.49229 * 4 2 1 6 6 C 1.46894 * 111.00155 * 290.55355 * 5 4 2 7 7 C 1.50699 * 109.46873 * 169.99890 * 6 5 4 8 8 H 1.08001 * 120.00338 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00029 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99991 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99924 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47035 * 90.00191 * 11 9 7 13 13 H 1.48503 * 109.46902 * 209.99803 * 11 9 7 14 14 H 1.48499 * 109.47149 * 330.00092 * 11 9 7 15 15 C 1.46895 * 110.99770 * 166.59561 * 5 4 2 16 16 C 1.53007 * 117.50151 * 5.82282 * 15 5 4 17 17 C 1.53001 * 60.00006 * 252.50885 * 16 15 5 18 18 H 1.07996 * 120.00281 * 0.02562 * 1 2 3 19 19 H 1.08007 * 119.99684 * 179.72243 * 1 2 3 20 20 H 1.08996 * 109.47704 * 235.50272 * 4 2 1 21 21 H 1.09003 * 109.46547 * 355.49933 * 4 2 1 22 22 H 1.09001 * 109.46944 * 289.99712 * 6 5 4 23 23 H 1.09001 * 109.47529 * 49.99823 * 6 5 4 24 24 H 0.96996 * 119.99898 * 179.97438 * 10 9 7 25 25 H 1.08998 * 115.55333 * 151.52861 * 15 5 4 26 26 H 1.09000 * 117.49760 * 359.97438 * 16 15 5 27 27 H 1.08996 * 117.49984 * 145.01845 * 16 15 5 28 28 H 1.08999 * 117.50008 * 252.50876 * 17 16 15 29 29 H 1.09001 * 117.51993 * 107.47790 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 35 2.2567 1.6376 0.0000 4 6 2.0648 -1.3051 0.0006 5 7 2.8259 -1.4316 -1.2495 6 6 1.9278 -1.6292 -2.3950 7 6 2.7131 -1.5093 -3.6756 8 1 3.7733 -1.3061 -3.6419 9 6 2.0781 -1.6589 -4.8903 10 7 0.7872 -1.9068 -4.9313 11 14 3.0515 -1.5096 -6.4776 12 1 3.5723 -2.8448 -6.8664 13 1 2.1683 -0.9905 -7.5528 14 1 4.1874 -0.5747 -6.2756 15 6 3.8104 -2.5181 -1.1588 16 6 3.7883 -3.3882 0.0996 17 6 4.9198 -2.3808 -0.1141 18 1 -0.5400 0.9352 -0.0004 19 1 -0.5400 -0.9354 -0.0045 20 1 2.7506 -1.3284 0.8475 21 1 1.3592 -2.1319 0.0816 22 1 1.4771 -2.6199 -2.3366 23 1 1.1440 -0.8719 -2.3771 24 1 0.3404 -2.0117 -5.7859 25 1 4.0641 -3.0026 -2.1016 26 1 3.0435 -3.1542 0.8603 27 1 4.0273 -4.4454 -0.0153 28 1 5.9033 -2.7752 -0.3696 29 1 4.9195 -1.4840 0.5055 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549347.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:53 Heat of formation + Delta-G solvation = 53.952837 kcal Electronic energy + Delta-G solvation = -12502.819158 eV Core-core repulsion = 10280.840428 eV Total energy + Delta-G solvation = -2221.978730 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.37074 -34.81164 -33.20408 -31.56122 -29.34562 -27.42770 -24.76160 -22.29472 -21.89273 -19.81114 -18.57568 -16.49299 -15.83616 -15.02456 -14.41671 -14.29487 -13.92905 -12.67105 -12.43592 -12.09369 -11.83518 -11.24720 -11.12415 -10.95355 -10.80410 -10.73410 -10.54118 -10.06510 -9.98210 -9.63578 -9.58403 -9.18771 -8.62703 -8.41186 -7.18662 -6.02047 -4.02580 2.13616 2.31554 3.32627 3.39162 3.44361 4.36536 4.46544 4.76568 5.20996 5.32630 5.43443 5.53494 5.59197 5.77425 5.89067 5.97125 6.03295 6.28811 6.41471 6.52941 6.59700 6.71544 7.20639 7.31373 7.80362 8.04582 8.16946 8.50602 9.05083 9.61276 11.08895 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.008682 C = 0.007241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.056622 B = 3224.368573 C = 3866.146366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 Br -0.069 7.069 4 C 0.090 3.910 5 N -0.497 5.497 6 C 0.194 3.806 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.055 3.945 16 C -0.233 4.233 17 C -0.184 4.184 18 H 0.108 0.892 19 H 0.116 0.884 20 H 0.078 0.922 21 H 0.045 0.955 22 H -0.008 1.008 23 H 0.035 0.965 24 H 0.261 0.739 25 H 0.126 0.874 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 3.132 11.827 12.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 Br 0.015 6.985 4 C -0.039 4.039 5 N -0.218 5.218 6 C 0.070 3.930 7 C -0.543 4.543 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.055 4.055 16 C -0.273 4.273 17 C -0.222 4.222 18 H 0.126 0.874 19 H 0.134 0.866 20 H 0.096 0.904 21 H 0.063 0.937 22 H 0.010 0.990 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.144 0.856 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.078 4.147 11.595 12.488 hybrid contribution -0.282 -1.066 -0.827 1.378 sum 1.796 3.081 10.768 11.344 Atomic orbital electron populations 1.24019 0.94127 1.03135 0.98174 1.23982 0.95598 0.92606 1.04736 1.96606 1.77906 1.26525 1.97475 1.21244 0.96073 0.91408 0.95198 1.61948 1.16690 1.40934 1.02272 1.19779 0.91358 0.95439 0.86455 1.21142 0.95640 1.47744 0.89807 0.91751 1.24964 0.94905 0.95449 0.99188 1.69954 1.08736 1.49428 1.25714 0.86525 0.79914 0.78240 0.82933 1.20789 1.21298 1.19720 1.22644 0.96186 0.93205 0.93423 1.23539 1.02946 0.96987 1.03793 1.23006 0.93979 1.00476 1.04782 0.87383 0.86579 0.90394 0.93666 0.99006 0.94657 0.92979 0.85601 0.89158 0.89590 0.89298 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 13.77 28.98 0.40 -1.97 15 2 C -0.09 -1.54 4.89 -36.06 -0.18 -1.72 15 3 Br -0.07 -1.15 33.73 -68.01 -2.29 -3.44 15 4 C 0.09 1.59 3.89 -4.97 -0.02 1.57 15 5 N -0.50 -10.49 4.67 -229.52 -1.07 -11.56 15 6 C 0.19 4.95 4.57 -4.98 -0.02 4.92 15 7 C -0.50 -14.03 8.27 -34.44 -0.28 -14.32 15 8 H 0.06 1.79 7.60 -52.49 -0.40 1.39 15 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 15 10 N -0.90 -26.49 13.29 55.43 0.74 -25.75 15 11 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 15 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 14 H -0.27 -6.54 7.11 56.52 0.40 -6.13 15 15 C 0.06 1.07 5.71 -67.71 -0.39 0.68 15 16 C -0.23 -3.66 9.52 -26.73 -0.25 -3.91 15 17 C -0.18 -2.92 9.97 -26.73 -0.27 -3.18 15 18 H 0.11 1.49 8.05 -52.49 -0.42 1.07 15 19 H 0.12 1.66 7.84 -52.48 -0.41 1.25 15 20 H 0.08 1.26 5.99 -51.93 -0.31 0.95 15 21 H 0.05 0.79 7.49 -51.93 -0.39 0.40 15 22 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 15 23 H 0.04 0.97 6.97 -51.93 -0.36 0.61 15 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 25 H 0.13 2.65 7.23 -51.93 -0.38 2.27 15 26 H 0.09 1.35 5.91 -51.93 -0.31 1.04 15 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 15 29 H 0.09 1.41 7.72 -51.93 -0.40 1.01 15 LS Contribution 266.10 15.07 4.01 4.01 Total: -1.00 -28.94 266.10 -8.53 -37.47 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -3.78 Total: -0.96 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.11 Total: -16.43 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.33 Total: -37.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 35 Polarization: -1.15 SS G_CDS: -2.29 Total: -3.44 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.94 -8.53 -37.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549347.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.425 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds