Wall clock time and date at job start Mon Mar 30 2020 06:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46929 * 2 1 4 4 C 1.50690 * 109.47490 * 120.00288 * 2 1 3 5 5 H 1.08006 * 119.99740 * 119.99887 * 4 2 1 6 6 C 1.37881 * 120.00400 * 300.00286 * 4 2 1 7 7 N 1.31510 * 119.99823 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99719 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47295 * 89.99988 * 8 6 4 10 10 H 1.48502 * 109.46834 * 210.00115 * 8 6 4 11 11 H 1.48506 * 109.47170 * 330.00054 * 8 6 4 12 12 N 1.46897 * 109.46870 * 240.00986 * 2 1 3 13 13 C 1.46899 * 111.00355 * 84.99686 * 12 2 1 14 14 H 1.09002 * 109.47043 * 324.99919 * 13 12 2 15 15 C 1.53002 * 109.47394 * 84.99974 * 13 12 2 16 16 C 1.50703 * 109.47107 * 204.99940 * 13 12 2 17 17 C 1.33352 * 125.19007 * 139.99961 * 16 13 12 18 18 C 1.38467 * 114.92747 * 179.97438 * 17 16 13 19 19 C 1.33493 * 114.88566 * 359.97438 * 18 17 16 20 20 Cl 1.73609 * 125.20571 * 180.02562 * 19 18 17 21 21 S 1.75880 * 109.58622 * 359.76274 * 19 18 17 22 22 H 1.08998 * 109.46575 * 299.99300 * 1 2 3 23 23 H 1.08988 * 109.47163 * 59.99402 * 1 2 3 24 24 H 1.09004 * 109.46437 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99291 * 180.02562 * 7 6 4 26 26 H 1.00898 * 111.00020 * 321.03518 * 12 2 1 27 27 H 1.09002 * 109.47075 * 59.99404 * 15 13 12 28 28 H 1.08996 * 109.47407 * 180.02562 * 15 13 12 29 29 H 1.09000 * 109.46986 * 300.00133 * 15 13 12 30 30 H 1.07996 * 122.53150 * 359.97438 * 17 16 13 31 31 H 1.08007 * 122.55627 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 2.1375 -0.8599 3.5564 8 14 0.6260 1.2796 2.6543 9 1 -0.8019 0.8742 2.6995 10 1 0.9774 1.9950 3.9073 11 1 0.8491 2.1772 1.4925 12 7 2.0196 -0.6923 -1.1996 13 6 2.0824 0.2229 -2.3469 14 1 1.2575 0.9332 -2.2906 15 6 3.4110 0.9813 -2.3224 16 6 1.9785 -0.5672 -3.6260 17 6 1.2865 -0.1968 -4.7041 18 6 1.3377 -1.0859 -5.7643 19 6 2.0726 -2.1788 -5.5460 20 17 2.3196 -3.4633 -6.6875 21 16 2.7584 -2.1145 -3.9277 22 1 -0.3632 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8898 24 1 -0.3632 -1.0277 -0.0005 25 1 1.9028 -0.5288 4.4374 26 1 1.4496 -1.4977 -1.4102 27 1 4.2359 0.2709 -2.3787 28 1 3.4574 1.6606 -3.1735 29 1 3.4862 1.5527 -1.3973 30 1 0.7284 0.7268 -4.7469 31 1 0.8229 -0.9084 -6.6971 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042587864.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:13 Heat of formation + Delta-G solvation = 29.643664 kcal Electronic energy + Delta-G solvation = -14938.809160 eV Core-core repulsion = 12372.956862 eV Total energy + Delta-G solvation = -2565.852298 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.40656 -37.03456 -36.22323 -33.20008 -31.30383 -28.41434 -27.63835 -25.15023 -24.14662 -21.66353 -20.13019 -19.28422 -17.66405 -16.48127 -15.83281 -14.96234 -14.85887 -14.05524 -13.79439 -13.34403 -13.23576 -12.80890 -12.61046 -12.46071 -12.16788 -11.78439 -11.64165 -11.38631 -11.23991 -11.11064 -10.78499 -10.58298 -10.41358 -10.13320 -9.55164 -9.19466 -8.59886 -8.52404 -8.47158 -7.59489 -6.06540 -4.04213 0.83084 1.14547 1.94005 2.23077 2.59225 3.23431 3.32432 3.36297 4.37888 4.65188 4.95820 5.23493 5.24469 5.39083 5.59202 5.68016 5.87007 5.98391 6.11073 6.15677 6.22662 6.24743 6.31915 6.47257 6.59159 6.70381 7.05420 7.65609 7.81689 8.18291 8.64979 9.04890 9.55556 11.06936 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.040956 B = 0.004807 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.498644 B = 5822.924637 C = 6034.300212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.183 3.817 3 H 0.037 0.963 4 C -0.498 4.498 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.666 5.666 13 C 0.145 3.855 14 H 0.058 0.942 15 C -0.134 4.134 16 C -0.157 4.157 17 C -0.146 4.146 18 C -0.117 4.117 19 C -0.172 4.172 20 Cl -0.026 7.026 21 S 0.199 5.801 22 H 0.046 0.954 23 H 0.026 0.974 24 H 0.054 0.946 25 H 0.263 0.737 26 H 0.334 0.666 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.143 0.857 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 0.622 -18.650 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.075 3.925 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.297 5.297 13 C 0.034 3.966 14 H 0.075 0.925 15 C -0.192 4.192 16 C -0.276 4.276 17 C -0.176 4.176 18 C -0.150 4.150 19 C -0.316 4.316 20 Cl 0.002 6.998 21 S 0.462 5.538 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.152 0.848 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.331 -0.385 -17.547 17.554 hybrid contribution -2.638 1.716 -0.965 3.291 sum -2.306 1.331 -18.512 18.702 Atomic orbital electron populations 1.22873 1.01442 1.01027 0.98923 1.19695 0.88565 0.95238 0.89044 0.94503 1.20934 1.31295 1.13805 0.87591 0.89958 1.24930 0.95948 0.96569 0.95875 1.69880 1.45799 1.40293 0.97849 0.86913 0.80623 0.83977 0.76912 1.20791 1.22401 1.19501 1.60866 1.58226 1.08404 1.02236 1.20144 0.98416 0.92965 0.85117 0.92459 1.21814 0.96325 0.99612 1.01487 1.25044 1.02534 0.99325 1.00669 1.19904 1.03511 1.01809 0.92380 1.20080 1.00848 0.93030 1.00996 1.25447 1.10588 0.97145 0.98410 1.98345 1.95874 1.47796 1.57776 1.84811 1.47941 1.17577 1.03475 0.93517 0.95508 0.92646 0.92663 0.84808 0.91888 0.93137 0.91428 0.83890 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 8.63 37.16 0.32 -3.52 16 2 C 0.18 4.14 1.98 -68.87 -0.14 4.00 16 3 H 0.04 0.86 6.17 -51.93 -0.32 0.54 16 4 C -0.50 -13.69 9.42 -34.44 -0.32 -14.01 16 5 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 8 Si 0.88 21.51 24.37 -169.99 -4.14 17.37 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 12 N -0.67 -12.89 5.84 -102.17 -0.60 -13.49 16 13 C 0.15 2.31 2.86 -68.86 -0.20 2.12 16 14 H 0.06 0.91 7.09 -51.93 -0.37 0.54 16 15 C -0.13 -2.03 9.38 37.16 0.35 -1.68 16 16 C -0.16 -2.19 5.14 -36.01 -0.18 -2.37 16 17 C -0.15 -1.77 10.04 -41.20 -0.41 -2.18 16 18 C -0.12 -1.34 10.13 -41.16 -0.42 -1.76 16 19 C -0.17 -2.13 7.10 29.07 0.21 -1.92 16 20 Cl -0.03 -0.29 29.29 -51.86 -1.52 -1.81 16 21 S 0.20 2.70 22.90 -107.50 -2.46 0.24 16 22 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 23 H 0.03 0.48 7.42 -51.94 -0.39 0.09 16 24 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.33 6.27 7.91 -39.29 -0.31 5.96 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.11 7.43 -51.93 -0.39 0.72 16 30 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 283.16 15.07 4.27 4.27 Total: -1.00 -28.79 283.16 -8.23 -37.02 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.66 Total: 2.38 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -0.89 Total: -19.50 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.18 Total: -39.97 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.37 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.46 Total: 0.24 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.52 Total: -1.81 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.79 -8.23 -37.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042587864.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.662 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds