Wall clock time and date at job start Mon Mar 30 2020 06:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46929 * 2 1 4 4 C 1.50690 * 109.47490 * 120.00288 * 2 1 3 5 5 H 1.08006 * 119.99740 * 119.99887 * 4 2 1 6 6 C 1.37881 * 120.00400 * 300.00286 * 4 2 1 7 7 N 1.31510 * 119.99823 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99719 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47295 * 89.99988 * 8 6 4 10 10 H 1.48502 * 109.46834 * 210.00115 * 8 6 4 11 11 H 1.48506 * 109.47170 * 330.00054 * 8 6 4 12 12 N 1.46897 * 109.46870 * 240.00986 * 2 1 3 13 13 C 1.46899 * 111.00355 * 84.99686 * 12 2 1 14 14 H 1.09002 * 109.47043 * 324.99919 * 13 12 2 15 15 C 1.53002 * 109.47394 * 84.99974 * 13 12 2 16 16 C 1.50703 * 109.47107 * 204.99940 * 13 12 2 17 17 C 1.33352 * 125.19007 * 139.99961 * 16 13 12 18 18 C 1.38467 * 114.92747 * 179.97438 * 17 16 13 19 19 C 1.33493 * 114.88566 * 359.97438 * 18 17 16 20 20 Cl 1.73609 * 125.20571 * 180.02562 * 19 18 17 21 21 S 1.75880 * 109.58622 * 359.76274 * 19 18 17 22 22 H 1.08998 * 109.46575 * 299.99300 * 1 2 3 23 23 H 1.08988 * 109.47163 * 59.99402 * 1 2 3 24 24 H 1.09004 * 109.46437 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99291 * 180.02562 * 7 6 4 26 26 H 1.00898 * 111.00020 * 321.03518 * 12 2 1 27 27 H 1.09002 * 109.47075 * 59.99404 * 15 13 12 28 28 H 1.08996 * 109.47407 * 180.02562 * 15 13 12 29 29 H 1.09000 * 109.46986 * 300.00133 * 15 13 12 30 30 H 1.07996 * 122.53150 * 359.97438 * 17 16 13 31 31 H 1.08007 * 122.55627 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 2.1375 -0.8599 3.5564 8 14 0.6260 1.2796 2.6543 9 1 -0.8019 0.8742 2.6995 10 1 0.9774 1.9950 3.9073 11 1 0.8491 2.1772 1.4925 12 7 2.0196 -0.6923 -1.1996 13 6 2.0824 0.2229 -2.3469 14 1 1.2575 0.9332 -2.2906 15 6 3.4110 0.9813 -2.3224 16 6 1.9785 -0.5672 -3.6260 17 6 1.2865 -0.1968 -4.7041 18 6 1.3377 -1.0859 -5.7643 19 6 2.0726 -2.1788 -5.5460 20 17 2.3196 -3.4633 -6.6875 21 16 2.7584 -2.1145 -3.9277 22 1 -0.3632 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8898 24 1 -0.3632 -1.0277 -0.0005 25 1 1.9028 -0.5288 4.4374 26 1 1.4496 -1.4977 -1.4102 27 1 4.2359 0.2709 -2.3787 28 1 3.4574 1.6606 -3.1735 29 1 3.4862 1.5527 -1.3973 30 1 0.7284 0.7268 -4.7469 31 1 0.8229 -0.9084 -6.6971 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042587864.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:12 Heat of formation + Delta-G solvation = 11.153469 kcal Electronic energy + Delta-G solvation = -14939.610955 eV Core-core repulsion = 12372.956862 eV Total energy + Delta-G solvation = -2566.654093 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.51729 -38.21123 -37.37304 -34.96850 -33.07833 -29.63104 -29.00156 -27.11907 -25.21970 -23.02534 -21.66251 -20.36425 -19.13279 -18.14684 -17.10052 -16.51311 -16.30096 -15.41863 -15.15819 -14.67815 -14.45723 -14.25267 -14.09116 -13.76741 -13.60477 -13.21503 -13.02857 -12.77822 -12.50054 -12.31804 -12.24531 -12.00238 -11.78681 -11.53959 -11.43793 -11.16924 -10.73631 -9.53107 -9.48298 -9.11982 -8.24559 -6.26999 -0.15124 0.16381 0.96295 1.27616 1.31759 1.37075 1.47273 1.66598 2.34192 3.09872 3.36711 3.70779 4.31847 4.34549 4.40279 4.49902 4.55630 4.57453 4.67936 4.84176 4.94579 4.96173 5.09099 5.16098 5.36014 5.37126 5.41098 5.69179 6.02314 6.65409 6.67339 6.80543 7.37698 8.92947 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.040956 B = 0.004807 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.498644 B = 5822.924637 C = 6034.300212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.189 3.811 3 H 0.036 0.964 4 C -0.501 4.501 5 H 0.034 0.966 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.952 3.048 9 H -0.269 1.269 10 H -0.301 1.301 11 H -0.245 1.245 12 N -0.679 5.679 13 C 0.149 3.851 14 H 0.069 0.931 15 C -0.132 4.132 16 C -0.173 4.173 17 C -0.128 4.128 18 C -0.112 4.112 19 C -0.172 4.172 20 Cl -0.017 7.017 21 S 0.156 5.844 22 H 0.037 0.963 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.264 0.736 26 H 0.335 0.665 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.169 0.831 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 2.461 -21.154 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.080 3.920 3 H 0.054 0.946 4 C -0.540 4.540 5 H 0.052 0.948 6 C -0.188 4.188 7 N -0.593 5.593 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.229 1.229 11 H -0.169 1.169 12 N -0.310 5.310 13 C 0.038 3.962 14 H 0.086 0.914 15 C -0.190 4.190 16 C -0.292 4.292 17 C -0.159 4.159 18 C -0.144 4.144 19 C -0.315 4.315 20 Cl 0.012 6.988 21 S 0.419 5.581 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.153 0.847 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.186 0.814 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.414 1.450 -20.091 20.193 hybrid contribution -2.013 1.033 -0.305 2.283 sum -3.428 2.483 -20.396 20.831 Atomic orbital electron populations 1.22740 0.99500 1.01366 1.00128 1.19437 0.89884 0.94411 0.88289 0.94573 1.21237 1.30152 1.12455 0.90139 0.94777 1.25812 0.97590 1.00078 0.95363 1.70054 1.48070 1.42666 0.98545 0.85821 0.78929 0.80016 0.77339 1.19490 1.22909 1.16923 1.60675 1.58320 1.09166 1.02864 1.20111 0.98933 0.92631 0.84565 0.91379 1.21805 0.95804 0.99605 1.01825 1.24787 1.04380 0.99383 1.00634 1.20209 1.01910 1.02336 0.91409 1.20384 1.00122 0.92138 1.01795 1.25515 1.10506 0.97820 0.97706 1.98351 1.95846 1.47525 1.57126 1.84979 1.49118 1.18598 1.05371 0.94461 0.91893 0.92910 0.92692 0.84651 0.93025 0.90257 0.93136 0.81376 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.99 8.63 71.98 0.62 -6.37 16 2 C 0.19 8.37 1.98 44.17 0.09 8.46 16 3 H 0.04 1.62 6.17 -2.39 -0.01 1.61 16 4 C -0.50 -28.28 9.42 25.60 0.24 -28.04 16 5 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 6 C 0.01 0.47 5.45 84.66 0.46 0.93 16 7 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 8 Si 0.95 44.01 24.37 68.60 1.67 45.68 16 9 H -0.27 -11.84 6.87 99.48 0.68 -11.15 16 10 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.25 -10.29 6.53 99.48 0.65 -9.64 16 12 N -0.68 -25.91 5.84 -477.16 -2.79 -28.70 16 13 C 0.15 4.42 2.86 44.17 0.13 4.54 16 14 H 0.07 1.90 7.09 -2.39 -0.02 1.88 16 15 C -0.13 -3.80 9.38 71.98 0.68 -3.13 16 16 C -0.17 -4.44 5.14 24.58 0.13 -4.31 16 17 C -0.13 -2.62 10.04 21.22 0.21 -2.40 16 18 C -0.11 -2.17 10.13 21.25 0.22 -1.95 16 19 C -0.17 -3.87 7.10 66.74 0.47 -3.39 16 20 Cl -0.02 -0.35 29.29 -2.72 -0.08 -0.43 16 21 S 0.16 4.13 22.90 -56.49 -1.29 2.84 16 22 H 0.04 1.53 3.27 -2.39 -0.01 1.52 16 23 H 0.06 2.00 7.42 -2.39 -0.02 1.99 16 24 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 25 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.34 12.51 7.91 -89.70 -0.71 11.80 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.60 7.43 -2.39 -0.02 1.58 16 30 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -63.61 283.16 1.41 -62.21 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.36 Total: 13.45 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 3.24 Total: -35.67 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.49 Total: -88.08 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.67 Total: 45.68 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.29 Total: 2.84 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -63.61 1.41 -62.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042587864.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.360 kcal (2) G-P(sol) polarization free energy of solvation -63.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds