Wall clock time and date at job start Mon Mar 30 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50697 * 109.46715 * 301.18309 * 3 2 1 5 5 C 1.38752 * 119.73883 * 269.72567 * 4 3 2 6 6 F 1.35103 * 119.86632 * 359.97438 * 5 4 3 7 7 C 1.38059 * 120.26256 * 179.72445 * 5 4 3 8 8 F 1.35107 * 120.13216 * 180.27876 * 7 5 4 9 9 C 1.40953 * 119.72982 * 0.55270 * 7 5 4 10 10 C 1.41220 * 120.25571 * 179.70137 * 9 7 5 11 11 H 1.07993 * 120.00481 * 216.36619 * 10 9 7 12 12 C 1.39927 * 119.99881 * 36.37067 * 10 9 7 13 13 N 1.30867 * 120.00015 * 20.04515 * 12 10 9 14 14 Si 1.86800 * 119.99719 * 200.04376 * 12 10 9 15 15 H 1.48498 * 109.47403 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47209 * 120.00127 * 14 12 10 17 17 H 1.48505 * 109.47000 * 240.00089 * 14 12 10 18 18 C 1.40952 * 119.48590 * 359.72614 * 9 7 5 19 19 F 1.35099 * 120.13458 * 179.97438 * 18 9 7 20 20 C 1.38057 * 119.73053 * 359.97438 * 18 9 7 21 21 F 1.35096 * 119.86834 * 180.02562 * 20 18 9 22 22 H 1.08996 * 109.47034 * 61.18304 * 3 2 1 23 23 H 1.09001 * 109.46692 * 181.18738 * 3 2 1 24 24 H 0.97000 * 120.00309 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1105 -0.7348 1.2155 5 6 3.3450 -0.0390 2.3929 6 9 3.1224 1.2926 2.4431 7 6 3.8001 -0.7029 3.5146 8 9 4.0222 -0.0237 4.6612 9 6 4.0375 -2.0911 3.4570 10 6 4.5090 -2.7802 4.5959 11 1 5.2122 -3.5920 4.4832 12 6 4.0650 -2.4111 5.8705 13 7 2.9570 -1.7277 6.0050 14 14 5.0537 -2.8939 7.3800 15 1 6.2562 -3.6577 6.9607 16 1 5.4733 -1.6703 8.1092 17 1 4.2172 -3.7383 8.2704 18 6 3.8011 -2.7860 2.2537 19 9 4.0248 -4.1165 2.1837 20 6 3.3402 -2.1015 1.1469 21 9 3.1122 -2.7649 -0.0077 22 1 2.9715 -0.4945 -0.9004 23 1 2.9708 1.0283 0.0213 24 1 2.6494 -1.4716 6.8885 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368135.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:22 Heat of formation + Delta-G solvation = -154.552332 kcal Electronic energy + Delta-G solvation = -18952.233187 eV Core-core repulsion = 15136.923389 eV Total energy + Delta-G solvation = -3815.309798 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.22556 -50.14944 -49.19506 -49.03355 -39.25245 -37.59704 -35.91110 -33.42983 -30.26166 -30.22640 -26.58801 -23.56958 -23.27324 -20.10895 -19.15240 -19.00895 -18.22234 -18.07057 -17.19349 -17.09254 -16.91445 -16.51602 -16.22993 -15.80186 -15.64432 -15.43582 -15.06897 -15.03259 -14.90840 -14.03390 -13.89110 -13.81529 -13.51405 -13.23292 -12.91723 -12.64214 -12.33719 -12.29392 -11.90408 -11.84130 -11.13150 -9.69703 -9.26111 -9.01082 -6.79859 0.09633 0.15797 1.34614 1.39493 1.54340 1.74480 1.81018 2.09449 2.20230 2.83526 2.93160 3.24527 3.35605 3.38946 3.86836 3.91983 4.35045 4.40761 4.67899 4.85074 4.92465 5.00524 5.10546 5.50509 5.71185 6.06817 6.34005 6.44831 6.58698 7.99427 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.008290 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.730069 B = 3376.666609 C = 4065.769719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.236 3.764 3 C 0.044 3.956 4 C -0.238 4.238 5 C 0.126 3.874 6 F -0.131 7.131 7 C -0.014 4.014 8 F -0.134 7.134 9 C 0.072 3.928 10 C -0.455 4.455 11 H 0.103 0.897 12 C 0.035 3.965 13 N -0.785 5.785 14 Si 0.990 3.010 15 H -0.248 1.248 16 H -0.262 1.262 17 H -0.261 1.261 18 C -0.053 4.053 19 F -0.144 7.144 20 C 0.136 3.864 21 F -0.128 7.128 22 H 0.153 0.847 23 H 0.150 0.850 24 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 2.038 -4.024 6.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.081 4.081 3 C 0.005 3.995 4 C -0.242 4.242 5 C 0.105 3.895 6 F -0.110 7.110 7 C -0.035 4.035 8 F -0.113 7.113 9 C 0.067 3.933 10 C -0.481 4.481 11 H 0.121 0.879 12 C -0.186 4.186 13 N -0.406 5.406 14 Si 0.809 3.191 15 H -0.171 1.171 16 H -0.187 1.187 17 H -0.185 1.185 18 C -0.075 4.075 19 F -0.123 7.123 20 C 0.116 3.884 21 F -0.106 7.106 22 H 0.170 0.830 23 H 0.168 0.832 24 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.839 2.146 -3.872 5.259 hybrid contribution 0.445 -0.274 0.911 1.050 sum 3.284 1.872 -2.961 4.802 Atomic orbital electron populations 1.81147 1.14613 1.10956 1.10534 1.29752 0.95703 0.91290 0.91347 1.18000 0.79538 1.04939 0.96994 1.18244 1.18503 0.91282 0.96189 1.16885 1.01849 0.77392 0.93378 1.91431 1.92497 1.30103 1.96935 1.17493 1.14202 0.89758 0.82082 1.91349 1.92772 1.78969 1.48225 1.17385 0.92704 0.90357 0.92824 1.19864 1.22046 1.15724 0.90435 0.87944 1.26889 0.94856 0.92777 1.04112 1.69777 1.17207 1.24802 1.28854 0.85000 0.79199 0.79377 0.75532 1.17080 1.18656 1.18538 1.17466 1.16339 0.78020 0.95653 1.91335 1.93565 1.30591 1.96797 1.16751 1.01557 0.89405 0.80730 1.91442 1.92426 1.80582 1.46187 0.82960 0.83213 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.46 18.54 20.01 0.37 -18.09 14 2 C 0.24 7.44 15.41 89.44 1.38 8.82 14 3 C 0.04 1.10 5.46 28.04 0.15 1.25 14 4 C -0.24 -8.33 5.12 -19.62 -0.10 -8.43 14 5 C 0.13 5.07 7.23 22.35 0.16 5.23 14 6 F -0.13 -4.93 16.34 44.97 0.73 -4.19 14 7 C -0.01 -0.64 6.69 22.89 0.15 -0.49 14 8 F -0.13 -6.68 14.15 44.97 0.64 -6.04 14 9 C 0.07 3.50 5.41 -21.22 -0.11 3.39 14 10 C -0.45 -22.10 8.58 23.41 0.20 -21.90 14 11 H 0.10 4.77 7.92 -2.91 -0.02 4.75 14 12 C 0.04 1.61 4.50 85.25 0.38 1.99 14 13 N -0.78 -38.23 11.10 21.83 0.24 -37.99 14 14 Si 0.99 34.69 29.60 68.60 2.03 36.73 14 15 H -0.25 -8.33 7.11 99.48 0.71 -7.62 14 16 H -0.26 -8.97 7.11 99.48 0.71 -8.27 14 17 H -0.26 -8.73 7.11 99.48 0.71 -8.02 14 18 C -0.05 -2.41 7.31 22.89 0.17 -2.24 14 19 F -0.14 -6.56 16.74 44.97 0.75 -5.80 14 20 C 0.14 5.29 7.23 22.35 0.16 5.45 14 21 F -0.13 -4.52 16.35 44.97 0.74 -3.78 14 22 H 0.15 2.74 7.62 -2.39 -0.02 2.73 14 23 H 0.15 2.79 7.61 -2.39 -0.02 2.77 14 24 H 0.30 13.23 8.30 -92.71 -0.77 12.46 14 Total: -1.00 -56.64 248.52 9.34 -47.30 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: 1.29 Total: -1.20 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 2.55 Total: -6.92 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.61 Total: -56.08 kcal Atomic # 9 Polarization: -22.68 SS G_CDS: 2.86 Total: -19.82 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.73 kcal Total: -56.64 9.34 -47.30 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368135.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.253 kcal (2) G-P(sol) polarization free energy of solvation -56.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds