Wall clock time and date at job start Mon Mar 30 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.50702 * 109.47109 * 254.29740 * 3 2 1 5 5 C 1.38866 * 119.86862 * 269.98271 * 4 3 2 6 6 F 1.35102 * 119.74892 * 359.97438 * 5 4 3 7 7 C 1.39029 * 120.50311 * 180.02562 * 5 4 3 8 8 F 1.35096 * 119.89535 * 179.97438 * 7 5 4 9 9 C 1.37958 * 120.21651 * 359.74300 * 7 5 4 10 10 F 1.35093 * 120.13970 * 180.28035 * 9 7 5 11 11 C 1.40977 * 119.71519 * 0.50547 * 9 7 5 12 12 C 1.41156 * 120.24094 * 179.76630 * 11 9 7 13 13 H 1.08003 * 119.99337 * 36.26121 * 12 11 9 14 14 C 1.39881 * 120.00198 * 216.53288 * 12 11 9 15 15 N 1.30904 * 120.00151 * 19.60874 * 14 12 11 16 16 Si 1.86803 * 119.99988 * 199.60653 * 14 12 11 17 17 H 1.48503 * 109.46966 * 90.00254 * 16 14 12 18 18 H 1.48501 * 109.47127 * 210.00354 * 16 14 12 19 19 H 1.48499 * 109.47217 * 330.00236 * 16 14 12 20 20 C 1.37763 * 119.86050 * 90.00106 * 4 3 2 21 21 F 1.35100 * 120.11215 * 0.02562 * 20 4 3 22 22 H 1.09000 * 109.46993 * 134.30741 * 3 2 1 23 23 H 1.08999 * 109.47480 * 14.30483 * 3 2 1 24 24 H 0.97001 * 120.00191 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1102 0.3854 1.3678 5 6 3.3405 1.7212 1.6695 6 9 3.1131 2.6687 0.7336 7 6 3.8042 2.0909 2.9269 8 9 4.0246 3.3940 3.2070 9 6 4.0356 1.1319 3.8912 10 9 4.4808 1.4934 5.1144 11 6 3.8100 -0.2274 3.5932 12 6 4.0478 -1.2184 4.5699 13 1 3.8302 -1.0162 5.6083 14 6 4.5705 -2.4601 4.1937 15 7 5.1905 -2.5893 3.0481 16 14 4.3837 -3.9340 5.3261 17 1 3.1212 -4.6473 5.0060 18 1 5.5340 -4.8537 5.1353 19 1 4.3476 -3.4727 6.7371 20 6 3.3393 -0.5896 2.3137 21 9 3.1150 -1.8883 2.0165 22 1 2.9710 0.7187 -0.7354 23 1 2.9719 -0.9949 -0.2539 24 1 5.5533 -3.4504 2.7873 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368253.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:25 Heat of formation + Delta-G solvation = -152.270914 kcal Electronic energy + Delta-G solvation = -18978.602748 eV Core-core repulsion = 15163.391880 eV Total energy + Delta-G solvation = -3815.210868 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.42936 -49.68712 -49.35681 -49.07898 -39.26517 -37.63111 -35.83628 -33.47820 -31.35533 -28.49059 -27.32159 -23.67258 -23.09813 -19.91819 -19.20711 -19.08841 -18.58426 -17.74832 -17.39725 -17.04853 -16.69417 -16.40018 -16.06518 -15.98294 -15.63820 -15.55036 -15.18167 -15.05336 -14.96008 -14.02837 -13.92151 -13.77512 -13.44205 -13.28113 -12.82042 -12.65408 -12.38205 -12.33672 -11.88235 -11.81338 -11.07946 -9.66244 -9.36390 -8.94827 -6.68896 0.02183 0.16824 1.38536 1.43482 1.53295 1.68755 1.76449 2.13108 2.21535 2.78268 2.89744 3.19120 3.33164 3.63293 3.71505 3.77015 4.14306 4.45065 4.64289 4.85785 4.96939 5.06864 5.18834 5.41596 5.73415 6.08635 6.35525 6.51664 6.53235 8.06041 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.009852 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.228995 B = 2841.260799 C = 3954.822374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C 0.240 3.760 3 C 0.029 3.971 4 C -0.105 4.105 5 C -0.009 4.009 6 F -0.132 7.132 7 C 0.058 3.942 8 F -0.139 7.139 9 C -0.028 4.028 10 F -0.142 7.142 11 C 0.047 3.953 12 C -0.462 4.462 13 H 0.092 0.908 14 C 0.043 3.957 15 N -0.777 5.777 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.260 1.260 19 H -0.258 1.258 20 C 0.078 3.922 21 F -0.122 7.122 22 H 0.156 0.844 23 H 0.148 0.852 24 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.137 -1.027 -3.402 3.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C -0.077 4.077 3 C -0.011 4.011 4 C -0.108 4.108 5 C -0.031 4.031 6 F -0.111 7.111 7 C 0.037 3.963 8 F -0.118 7.118 9 C -0.049 4.049 10 F -0.121 7.121 11 C 0.042 3.958 12 C -0.488 4.488 13 H 0.110 0.890 14 C -0.179 4.179 15 N -0.399 5.399 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.184 1.184 19 H -0.182 1.182 20 C 0.057 3.943 21 F -0.100 7.100 22 H 0.173 0.827 23 H 0.165 0.835 24 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.406 -1.143 -3.568 3.768 hybrid contribution 0.595 -0.065 0.757 0.965 sum 0.190 -1.207 -2.811 3.065 Atomic orbital electron populations 1.81151 1.14119 1.10921 1.09885 1.29278 0.95203 0.91446 0.91774 1.18158 0.80376 1.08407 0.94111 1.18898 1.05293 0.90147 0.96498 1.16025 1.15476 0.85514 0.86046 1.91402 1.93558 1.63056 1.63099 1.17371 1.07141 0.77623 0.94151 1.91408 1.93028 1.33198 1.94137 1.17179 1.13299 0.92400 0.82053 1.91333 1.87873 1.92052 1.40822 1.17614 0.93945 0.90624 0.93604 1.19702 1.35997 0.97171 0.95910 0.88958 1.26635 0.91658 1.02152 0.97425 1.69728 1.20592 1.28618 1.20967 0.85136 0.79498 0.76270 0.78808 1.18563 1.18366 1.18217 1.16912 1.05304 0.78160 0.93970 1.91385 1.91858 1.33710 1.93050 0.82672 0.83458 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -17.71 18.54 20.01 0.37 -17.34 14 2 C 0.24 7.63 15.41 89.44 1.38 9.01 14 3 C 0.03 0.76 5.46 28.04 0.15 0.92 14 4 C -0.10 -3.83 5.09 -19.83 -0.10 -3.93 14 5 C -0.01 -0.36 7.26 22.61 0.16 -0.19 14 6 F -0.13 -4.72 16.35 44.97 0.74 -3.99 14 7 C 0.06 2.51 7.30 22.39 0.16 2.67 14 8 F -0.14 -5.87 17.08 44.97 0.77 -5.10 14 9 C -0.03 -1.29 7.30 22.87 0.17 -1.12 14 10 F -0.14 -6.70 16.74 44.97 0.75 -5.94 14 11 C 0.05 2.22 5.40 -21.20 -0.11 2.10 14 12 C -0.46 -21.98 8.57 23.38 0.20 -21.78 14 13 H 0.09 4.35 7.92 -2.91 -0.02 4.33 14 14 C 0.04 1.89 4.51 85.23 0.38 2.27 14 15 N -0.78 -34.38 11.11 21.82 0.24 -34.13 14 16 Si 0.98 33.66 29.60 68.60 2.03 35.69 14 17 H -0.26 -8.86 7.11 99.48 0.71 -8.16 14 18 H -0.26 -8.28 7.11 99.48 0.71 -7.57 14 19 H -0.26 -8.80 7.11 99.48 0.71 -8.09 14 20 C 0.08 3.34 6.62 22.85 0.15 3.49 14 21 F -0.12 -5.21 13.45 44.97 0.60 -4.61 14 22 H 0.16 3.11 7.62 -2.39 -0.02 3.09 14 23 H 0.15 3.33 7.62 -2.39 -0.02 3.31 14 24 H 0.30 11.97 8.30 -92.71 -0.77 11.20 14 Total: -1.00 -53.24 248.58 9.34 -43.89 By element: Atomic # 1 Polarization: -3.19 SS G_CDS: 1.29 Total: -1.89 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 2.55 Total: -6.56 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.61 Total: -51.48 kcal Atomic # 9 Polarization: -22.50 SS G_CDS: 2.86 Total: -19.64 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Total: -53.24 9.34 -43.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368253.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.379 kcal (2) G-P(sol) polarization free energy of solvation -53.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds