Wall clock time and date at job start Mon Mar 30 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.50706 * 109.46845 * 242.67800 * 3 2 1 5 5 C 1.37654 * 120.09277 * 269.98100 * 4 3 2 6 6 F 1.35098 * 119.87089 * 0.02562 * 5 4 3 7 7 C 1.39189 * 120.25895 * 180.02562 * 5 4 3 8 8 F 1.35100 * 119.77594 * 179.97438 * 7 5 4 9 9 C 1.38936 * 120.44003 * 0.02562 * 7 5 4 10 10 F 1.35106 * 119.91638 * 180.02562 * 9 7 5 11 11 C 1.38014 * 120.17442 * 359.72202 * 9 7 5 12 12 F 1.35100 * 120.13445 * 180.30126 * 11 9 7 13 13 C 1.40767 * 120.08425 * 90.00557 * 4 3 2 14 14 C 1.41211 * 120.21686 * 359.97326 * 13 4 3 15 15 H 1.07995 * 120.00568 * 323.13038 * 14 13 4 16 16 C 1.39906 * 119.99597 * 142.84856 * 14 13 4 17 17 N 1.30879 * 120.00134 * 340.97971 * 16 14 13 18 18 Si 1.86803 * 119.99916 * 160.97930 * 16 14 13 19 19 H 1.48500 * 109.47017 * 89.99606 * 18 16 14 20 20 H 1.48489 * 109.47114 * 210.00122 * 18 16 14 21 21 H 1.48501 * 109.46791 * 330.00301 * 18 16 14 22 22 H 1.09006 * 109.47074 * 122.68245 * 3 2 1 23 23 H 1.08991 * 109.47333 * 2.67949 * 3 2 1 24 24 H 0.97000 * 120.00030 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1100 0.6531 1.2624 5 6 3.3398 2.0099 1.2937 6 9 3.1139 2.7563 0.1905 7 6 3.8039 2.6160 2.4576 8 9 4.0266 3.9483 2.4774 9 6 4.0406 1.8597 3.5988 10 9 4.4906 2.4590 4.7230 11 6 3.8114 0.4987 3.5890 12 9 4.0361 -0.2349 4.7010 13 6 3.3456 -0.1237 2.4125 14 6 3.1126 -1.5162 2.3896 15 1 2.2777 -1.9150 1.8327 16 6 3.9670 -2.3798 3.0836 17 7 5.1614 -1.9761 3.4348 18 14 3.4029 -4.1091 3.5089 19 1 3.7685 -5.0343 2.4064 20 1 4.0621 -4.5500 4.7643 21 1 1.9295 -4.1176 3.6941 22 1 2.9711 0.5558 -0.8650 23 1 2.9718 -1.0256 -0.0480 24 1 5.7538 -2.5750 3.9157 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368268.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:28 Heat of formation + Delta-G solvation = -153.465004 kcal Electronic energy + Delta-G solvation = -19005.595569 eV Core-core repulsion = 15190.332922 eV Total energy + Delta-G solvation = -3815.262647 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 259.031 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.49704 -50.12369 -49.35898 -48.92205 -39.55424 -37.35363 -35.63111 -33.34044 -31.29713 -28.75176 -27.13171 -23.65790 -23.08112 -20.10426 -19.21004 -18.92767 -18.15635 -17.99916 -17.47363 -17.12196 -16.83080 -16.52353 -16.37942 -15.77887 -15.51548 -15.37123 -15.14284 -15.11557 -14.93100 -14.10928 -13.95061 -13.65224 -13.33762 -13.31087 -12.82357 -12.48644 -12.32867 -12.14700 -11.89025 -11.80893 -11.03990 -9.64241 -9.33984 -8.93861 -6.72572 0.04254 0.20297 1.41256 1.47058 1.58385 1.85935 1.93359 2.12125 2.26003 2.72466 2.95334 3.35395 3.39562 3.52654 3.81609 3.95976 4.17110 4.60801 4.71313 4.92612 4.94662 5.11036 5.28300 5.48595 5.78096 6.12854 6.39830 6.53491 6.70923 8.05478 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.010684 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.154599 B = 2620.026458 C = 3860.129542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.243 3.757 3 C 0.043 3.957 4 C -0.193 4.193 5 C 0.141 3.859 6 F -0.128 7.128 7 C -0.104 4.104 8 F -0.146 7.146 9 C 0.077 3.923 10 F -0.141 7.141 11 C -0.003 4.003 12 F -0.133 7.133 13 C 0.107 3.893 14 C -0.436 4.436 15 H 0.116 0.884 16 C 0.043 3.957 17 N -0.777 5.777 18 Si 0.977 3.023 19 H -0.247 1.247 20 H -0.275 1.275 21 H -0.259 1.259 22 H 0.142 0.858 23 H 0.149 0.851 24 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 -2.209 -3.722 4.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.073 4.073 3 C 0.004 3.996 4 C -0.197 4.197 5 C 0.120 3.880 6 F -0.107 7.107 7 C -0.126 4.126 8 F -0.125 7.125 9 C 0.056 3.944 10 F -0.120 7.120 11 C -0.024 4.024 12 F -0.112 7.112 13 C 0.102 3.898 14 C -0.461 4.461 15 H 0.134 0.866 16 C -0.180 4.180 17 N -0.398 5.398 18 Si 0.797 3.203 19 H -0.171 1.171 20 H -0.199 1.199 21 H -0.183 1.183 22 H 0.159 0.841 23 H 0.166 0.834 24 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.526 -2.205 -3.584 4.241 hybrid contribution 0.731 0.142 1.018 1.262 sum 0.205 -2.063 -2.566 3.299 Atomic orbital electron populations 1.81122 1.14375 1.11269 1.10720 1.29613 0.95466 0.91100 0.91131 1.17981 0.79724 1.06203 0.95699 1.19143 1.14204 0.89842 0.96483 1.16864 1.01014 0.88854 0.81221 1.91442 1.92308 1.76584 1.50318 1.16631 1.22990 0.78111 0.94826 1.91355 1.94306 1.29794 1.97058 1.17302 1.04239 0.90233 0.82620 1.91398 1.87104 1.83978 1.49501 1.17720 1.13272 0.85630 0.85814 1.91352 1.92808 1.76935 1.50117 1.17262 0.89920 0.94757 0.87868 1.19869 1.10484 0.89556 1.26232 0.86634 1.26743 0.93506 1.05487 0.92302 1.69770 1.06264 1.39850 1.23938 0.85211 0.79857 0.76068 0.79120 1.17115 1.19932 1.18294 0.84068 0.83389 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -18.49 18.54 20.01 0.37 -18.12 14 2 C 0.24 7.89 15.37 89.44 1.37 9.27 14 3 C 0.04 1.20 5.09 28.05 0.14 1.34 14 4 C -0.19 -7.14 5.15 -19.38 -0.10 -7.24 14 5 C 0.14 5.50 7.23 22.36 0.16 5.66 14 6 F -0.13 -4.56 16.35 44.97 0.74 -3.82 14 7 C -0.10 -4.50 7.33 22.67 0.17 -4.33 14 8 F -0.15 -6.29 17.08 44.97 0.77 -5.52 14 9 C 0.08 3.55 7.30 22.38 0.16 3.71 14 10 F -0.14 -6.47 17.08 44.97 0.77 -5.70 14 11 C 0.00 -0.13 6.68 22.90 0.15 0.02 14 12 F -0.13 -6.57 14.21 44.97 0.64 -5.93 14 13 C 0.11 4.56 5.39 -21.25 -0.11 4.45 14 14 C -0.44 -17.78 7.69 23.40 0.18 -17.60 14 15 H 0.12 4.27 7.34 -2.91 -0.02 4.25 14 16 C 0.04 1.72 4.53 85.24 0.39 2.11 14 17 N -0.78 -34.03 11.12 21.82 0.24 -33.79 14 18 Si 0.98 31.37 29.60 68.60 2.03 33.40 14 19 H -0.25 -7.29 7.11 99.48 0.71 -6.59 14 20 H -0.27 -8.94 7.11 99.48 0.71 -8.23 14 21 H -0.26 -8.44 7.11 99.48 0.71 -7.73 14 22 H 0.14 3.02 7.63 -2.38 -0.02 3.00 14 23 H 0.15 3.60 6.97 -2.39 -0.02 3.58 14 24 H 0.30 12.06 8.30 -92.71 -0.77 11.29 14 Total: -1.00 -51.89 247.29 9.36 -42.52 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: 1.30 Total: -0.43 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 2.51 Total: -2.62 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.61 Total: -51.91 kcal Atomic # 9 Polarization: -23.88 SS G_CDS: 2.91 Total: -20.97 kcal Atomic # 14 Polarization: 31.37 SS G_CDS: 2.03 Total: 33.40 kcal Total: -51.89 9.36 -42.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368268.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.941 kcal (2) G-P(sol) polarization free energy of solvation -51.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds