Wall clock time and date at job start Mon Mar 30 2020 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46848 * 269.99372 * 3 2 1 5 5 H 1.48491 * 109.47333 * 29.99975 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00033 * 3 2 1 7 7 C 1.37882 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00159 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.46949 * 59.99943 * 9 7 2 11 11 N 1.46901 * 109.46974 * 299.99712 * 9 7 2 12 12 C 1.53000 * 109.47161 * 179.97438 * 9 7 2 13 13 O 1.42896 * 109.47014 * 184.99945 * 12 9 7 14 14 C 1.35969 * 116.99875 * 180.02562 * 13 12 9 15 15 C 1.38682 * 120.03401 * 359.97438 * 14 13 12 16 16 C 1.38164 * 119.98275 * 179.71841 * 15 14 13 17 17 C 1.38464 * 120.04846 * 0.28390 * 16 15 14 18 18 F 1.35100 * 119.96376 * 179.97438 * 17 16 15 19 19 C 1.38435 * 120.06972 * 0.02562 * 17 16 15 20 20 C 1.38256 * 120.02049 * 0.02562 * 19 17 16 21 21 Cl 1.73593 * 120.02850 * 179.97438 * 20 19 17 22 22 H 0.96992 * 119.99917 * 0.02562 * 1 2 3 23 23 H 1.00897 * 110.99734 * 300.00302 * 11 9 7 24 24 H 1.00903 * 110.99690 * 63.95553 * 11 9 7 25 25 H 1.09001 * 109.47003 * 64.99820 * 12 9 7 26 26 H 1.09000 * 109.47132 * 305.00090 * 12 9 7 27 27 H 1.08002 * 120.01147 * 0.02562 * 15 14 13 28 28 H 1.07997 * 119.97329 * 180.29890 * 16 15 14 29 29 H 1.07999 * 119.99121 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 1 3.8746 -0.6800 0.8911 11 7 4.0017 -0.5019 -1.1983 12 6 4.0216 -2.6366 0.0023 13 8 5.4457 -2.6382 0.1202 14 6 6.0624 -3.8498 0.1363 15 6 5.3117 -5.0121 0.0410 16 6 5.9400 -6.2426 0.0515 17 6 7.3181 -6.3165 0.1631 18 9 7.9306 -7.5206 0.1737 19 6 8.0689 -5.1579 0.2648 20 6 7.4432 -3.9251 0.2556 21 17 8.3844 -2.4721 0.3838 22 1 -0.4849 0.8400 -0.0004 23 1 3.6784 -0.9596 -2.0374 24 1 3.7323 0.4705 -1.1901 25 1 3.7336 -3.1245 -0.9289 26 1 3.5867 -3.1750 0.8443 27 1 4.2368 -4.9552 -0.0464 28 1 5.3557 -7.1474 -0.0276 29 1 9.1438 -5.2171 0.3522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057518049.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:52 Heat of formation + Delta-G solvation = -62.952889 kcal Electronic energy + Delta-G solvation = -16633.848596 eV Core-core repulsion = 13497.767834 eV Total energy + Delta-G solvation = -3136.080762 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.91384 -39.98877 -37.39442 -36.27245 -34.92422 -31.91623 -31.10407 -29.49623 -27.60527 -25.38362 -23.19439 -22.30282 -20.21695 -18.41211 -17.59028 -16.90418 -16.63412 -15.96809 -15.60853 -15.05902 -14.84278 -14.48666 -14.15174 -13.90295 -13.41454 -13.14895 -12.91747 -12.41421 -12.17388 -11.61548 -11.28450 -11.16369 -10.90284 -10.81411 -10.77024 -10.47942 -10.02127 -9.63918 -9.09846 -8.88528 -7.98819 -7.60694 -6.35539 -4.41569 0.91081 1.11375 2.15806 3.09120 3.23627 3.26198 3.38924 3.45566 4.15327 4.22636 4.60453 4.74454 4.95838 5.02336 5.26762 5.48734 5.56718 5.68050 5.78209 5.89177 5.99772 6.08866 6.33441 6.56648 6.95065 7.29450 7.61889 7.97022 8.20180 8.40668 8.66408 9.23153 10.76559 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.005186 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.228791 B = 5397.971678 C = 6152.978938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.256 1.256 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.183 3.817 10 H 0.052 0.948 11 N -0.844 5.844 12 C 0.079 3.921 13 O -0.284 6.284 14 C 0.149 3.851 15 C -0.177 4.177 16 C -0.104 4.104 17 C 0.054 3.946 18 F -0.140 7.140 19 C -0.108 4.108 20 C -0.054 4.054 21 Cl -0.045 7.045 22 H 0.269 0.731 23 H 0.330 0.670 24 H 0.317 0.683 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.248 -9.496 -0.054 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.599 4.599 8 H 0.095 0.905 9 C 0.073 3.927 10 H 0.070 0.930 11 N -0.377 5.377 12 C 0.005 3.995 13 O -0.195 6.195 14 C 0.100 3.900 15 C -0.196 4.196 16 C -0.123 4.123 17 C 0.035 3.965 18 F -0.119 7.119 19 C -0.128 4.128 20 C -0.082 4.082 21 Cl -0.016 7.016 22 H 0.079 0.921 23 H 0.141 0.859 24 H 0.133 0.867 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.167 0.833 28 H 0.159 0.841 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.981 -9.256 0.261 16.769 hybrid contribution -0.800 0.784 -0.234 1.145 sum 13.180 -8.472 0.027 15.668 Atomic orbital electron populations 1.69878 1.06248 1.27522 1.48633 1.24959 0.94853 0.99195 0.93718 0.86963 0.80470 0.83470 0.78783 1.20015 1.21651 1.18101 1.21489 0.89438 0.95241 1.53740 0.90485 1.19421 0.93172 0.88713 0.91355 0.93017 1.59605 1.66931 1.05593 1.05585 1.23143 0.74971 1.00952 1.00477 1.86365 1.24065 1.23607 1.85490 1.18925 0.90587 0.86690 0.93841 1.21223 1.01311 0.90711 1.06346 1.21017 0.92576 0.98965 0.99777 1.17233 0.90714 0.80222 1.08348 1.91485 1.83335 1.42555 1.94550 1.20736 1.00953 0.89218 1.01860 1.19849 0.89271 0.88587 1.10458 1.98379 1.71514 1.35301 1.96427 0.92148 0.85871 0.86698 0.92280 0.91773 0.83258 0.84141 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.96 55.43 0.77 -24.82 15 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 15 3 Si 0.87 20.43 24.61 -169.99 -4.18 16.24 15 4 H -0.27 -6.15 7.01 56.52 0.40 -5.76 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.26 -5.91 6.54 56.52 0.37 -5.54 15 7 C -0.56 -14.57 9.31 -34.44 -0.32 -14.89 15 8 H 0.08 2.14 7.99 -52.49 -0.42 1.72 15 9 C 0.18 4.11 2.51 -68.86 -0.17 3.94 15 10 H 0.05 1.24 7.20 -51.93 -0.37 0.86 15 11 N -0.84 -18.16 9.10 -5.65 -0.05 -18.21 15 12 C 0.08 1.48 4.27 37.16 0.16 1.64 15 13 O -0.28 -5.17 9.54 -19.64 -0.19 -5.36 15 14 C 0.15 2.31 6.68 -39.21 -0.26 2.04 15 15 C -0.18 -2.34 9.04 -39.44 -0.36 -2.70 15 16 C -0.10 -1.22 10.02 -39.53 -0.40 -1.61 15 17 C 0.05 0.66 7.30 -39.43 -0.29 0.38 15 18 F -0.14 -1.71 17.27 2.25 0.04 -1.67 15 19 C -0.11 -1.32 9.80 -39.50 -0.39 -1.71 15 20 C -0.05 -0.77 6.33 -39.37 -0.25 -1.02 15 21 Cl -0.05 -0.65 28.50 -51.86 -1.48 -2.13 15 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 23 H 0.33 6.68 8.99 -39.29 -0.35 6.32 15 24 H 0.32 7.00 4.30 -39.29 -0.17 6.83 15 25 H 0.06 1.04 7.66 -51.93 -0.40 0.64 15 26 H 0.06 1.13 7.66 -51.93 -0.40 0.74 15 27 H 0.15 1.84 6.30 -52.49 -0.33 1.51 15 28 H 0.14 1.29 8.06 -52.49 -0.42 0.87 15 29 H 0.15 1.48 8.06 -52.49 -0.42 1.05 15 LS Contribution 268.89 15.07 4.05 4.05 Total: -1.00 -28.20 268.89 -5.87 -34.06 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -2.46 Total: 9.77 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.37 Total: -11.93 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.72 Total: -43.04 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.19 Total: -5.36 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.18 Total: 16.24 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.13 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.20 -5.87 -34.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057518049.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.891 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds