Wall clock time and date at job start Mon Mar 30 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46848 * 269.99372 * 3 2 1 5 5 H 1.48491 * 109.47333 * 29.99975 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00033 * 3 2 1 7 7 C 1.37882 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00159 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.46949 * 59.99943 * 9 7 2 11 11 N 1.46901 * 109.46974 * 299.99712 * 9 7 2 12 12 C 1.53000 * 109.47161 * 179.97438 * 9 7 2 13 13 O 1.42896 * 109.47014 * 184.99945 * 12 9 7 14 14 C 1.35969 * 116.99875 * 180.02562 * 13 12 9 15 15 C 1.38682 * 120.03401 * 359.97438 * 14 13 12 16 16 C 1.38164 * 119.98275 * 179.71841 * 15 14 13 17 17 C 1.38464 * 120.04846 * 0.28390 * 16 15 14 18 18 F 1.35100 * 119.96376 * 179.97438 * 17 16 15 19 19 C 1.38435 * 120.06972 * 0.02562 * 17 16 15 20 20 C 1.38256 * 120.02049 * 0.02562 * 19 17 16 21 21 Cl 1.73593 * 120.02850 * 179.97438 * 20 19 17 22 22 H 0.96992 * 119.99917 * 0.02562 * 1 2 3 23 23 H 1.00897 * 110.99734 * 300.00302 * 11 9 7 24 24 H 1.00903 * 110.99690 * 63.95553 * 11 9 7 25 25 H 1.09001 * 109.47003 * 64.99820 * 12 9 7 26 26 H 1.09000 * 109.47132 * 305.00090 * 12 9 7 27 27 H 1.08002 * 120.01147 * 0.02562 * 15 14 13 28 28 H 1.07997 * 119.97329 * 180.29890 * 16 15 14 29 29 H 1.07999 * 119.99121 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 1 3.8746 -0.6800 0.8911 11 7 4.0017 -0.5019 -1.1983 12 6 4.0216 -2.6366 0.0023 13 8 5.4457 -2.6382 0.1202 14 6 6.0624 -3.8498 0.1363 15 6 5.3117 -5.0121 0.0410 16 6 5.9400 -6.2426 0.0515 17 6 7.3181 -6.3165 0.1631 18 9 7.9306 -7.5206 0.1737 19 6 8.0689 -5.1579 0.2648 20 6 7.4432 -3.9251 0.2556 21 17 8.3844 -2.4721 0.3838 22 1 -0.4849 0.8400 -0.0004 23 1 3.6784 -0.9596 -2.0374 24 1 3.7323 0.4705 -1.1901 25 1 3.7336 -3.1245 -0.9289 26 1 3.5867 -3.1750 0.8443 27 1 4.2368 -4.9552 -0.0464 28 1 5.3557 -7.1474 -0.0276 29 1 9.1438 -5.2171 0.3522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057518049.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:51 Heat of formation + Delta-G solvation = -81.796618 kcal Electronic energy + Delta-G solvation = -16634.665721 eV Core-core repulsion = 13497.767834 eV Total energy + Delta-G solvation = -3136.897888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.88406 -41.15703 -38.64482 -37.36417 -36.66087 -33.91454 -32.11569 -30.66339 -29.18920 -27.18439 -24.32826 -23.42830 -21.87782 -19.75112 -18.96713 -18.25329 -17.92448 -17.46917 -16.81968 -16.47776 -16.05620 -15.89114 -15.51524 -15.14825 -14.67838 -14.57779 -14.38106 -13.75339 -13.59087 -13.22120 -12.81303 -12.67989 -12.44401 -12.25830 -11.95093 -11.85858 -11.67977 -11.46668 -10.93944 -10.09940 -9.41971 -9.10953 -8.43937 -6.53168 -0.08378 0.06503 1.08240 1.24143 1.33690 1.42203 2.18362 2.19788 2.36396 2.90617 3.23295 3.61291 3.78602 3.91041 4.00091 4.16351 4.24276 4.34408 4.53451 4.75066 4.82192 5.00463 5.04544 5.17482 5.33864 5.58705 5.96648 6.29712 6.39751 6.52298 6.71694 7.15250 8.71365 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.032354 B = 0.005186 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.228791 B = 5397.971678 C = 6152.978938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.256 1.256 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.558 4.558 8 H 0.049 0.951 9 C 0.185 3.815 10 H 0.038 0.962 11 N -0.837 5.837 12 C 0.090 3.910 13 O -0.302 6.302 14 C 0.122 3.878 15 C -0.176 4.176 16 C -0.095 4.095 17 C 0.058 3.942 18 F -0.137 7.137 19 C -0.102 4.102 20 C -0.064 4.064 21 Cl -0.052 7.052 22 H 0.270 0.730 23 H 0.338 0.662 24 H 0.315 0.685 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.157 0.843 28 H 0.169 0.831 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.790 -10.313 -0.354 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.759 3.241 4 H -0.182 1.182 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.598 4.598 8 H 0.067 0.933 9 C 0.075 3.925 10 H 0.056 0.944 11 N -0.370 5.370 12 C 0.016 3.984 13 O -0.215 6.215 14 C 0.074 3.926 15 C -0.195 4.195 16 C -0.114 4.114 17 C 0.039 3.961 18 F -0.116 7.116 19 C -0.122 4.122 20 C -0.091 4.091 21 Cl -0.024 7.024 22 H 0.079 0.921 23 H 0.150 0.850 24 H 0.130 0.870 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.174 0.826 28 H 0.187 0.813 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 15.549 -10.098 -0.052 18.540 hybrid contribution -1.233 0.867 -0.130 1.513 sum 14.316 -9.230 -0.182 17.034 Atomic orbital electron populations 1.70005 1.07935 1.28474 1.50646 1.25737 0.95475 1.02724 0.93575 0.86011 0.79133 0.79274 0.79651 1.18154 1.21927 1.17601 1.21759 0.91475 0.94087 1.52440 0.93270 1.19265 0.90893 0.91134 0.91205 0.94390 1.59578 1.66449 1.05412 1.05562 1.22800 0.75953 0.98398 1.01294 1.86277 1.23169 1.25435 1.86603 1.19166 0.91154 0.86383 0.95903 1.21330 1.01621 0.90581 1.05978 1.21289 0.92627 0.99380 0.98107 1.17331 0.90986 0.80229 1.07597 1.91502 1.83320 1.42337 1.94445 1.20927 1.02079 0.88427 1.00719 1.19978 0.88930 0.89046 1.11150 1.98373 1.71549 1.35906 1.96523 0.92053 0.84976 0.87000 0.91343 0.91207 0.82586 0.81323 0.81469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.68 13.96 21.45 0.30 -54.38 15 2 C 0.03 1.37 5.47 84.66 0.46 1.84 15 3 Si 0.93 41.90 24.61 68.60 1.69 43.59 15 4 H -0.26 -10.71 7.01 99.48 0.70 -10.02 15 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 15 6 H -0.25 -11.03 6.54 99.48 0.65 -10.37 15 7 C -0.56 -29.26 9.31 25.60 0.24 -29.02 15 8 H 0.05 2.79 7.99 -2.91 -0.02 2.77 15 9 C 0.19 8.21 2.51 44.17 0.11 8.33 15 10 H 0.04 1.80 7.20 -2.39 -0.02 1.78 15 11 N -0.84 -34.86 9.10 -171.80 -1.56 -36.42 15 12 C 0.09 3.32 4.27 71.98 0.31 3.62 15 13 O -0.30 -10.73 9.54 -93.20 -0.89 -11.62 15 14 C 0.12 3.60 6.68 22.51 0.15 3.75 15 15 C -0.18 -4.30 9.04 22.36 0.20 -4.10 15 16 C -0.10 -1.93 10.02 22.31 0.22 -1.71 15 17 C 0.06 1.25 7.30 22.37 0.16 1.41 15 18 F -0.14 -2.90 17.27 44.97 0.78 -2.13 15 19 C -0.10 -2.25 9.80 22.32 0.22 -2.03 15 20 C -0.06 -1.72 6.33 22.41 0.14 -1.58 15 21 Cl -0.05 -1.46 28.50 -2.72 -0.08 -1.54 15 22 H 0.27 14.88 8.31 -92.71 -0.77 14.11 15 23 H 0.34 13.20 8.99 -89.70 -0.81 12.40 15 24 H 0.31 13.28 4.30 -89.69 -0.39 12.90 15 25 H 0.07 2.34 7.66 -2.39 -0.02 2.32 15 26 H 0.07 2.43 7.66 -2.39 -0.02 2.41 15 27 H 0.16 3.55 6.30 -2.91 -0.02 3.54 15 28 H 0.17 2.44 8.06 -2.91 -0.02 2.42 15 29 H 0.17 2.90 8.06 -2.91 -0.02 2.88 15 Total: -1.00 -59.72 268.89 2.40 -57.31 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.05 Total: 24.67 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 2.22 Total: -19.49 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -1.26 Total: -90.80 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.89 Total: -11.62 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.69 Total: 43.59 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -59.72 2.40 -57.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057518049.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.485 kcal (2) G-P(sol) polarization free energy of solvation -59.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds