Wall clock time and date at job start Mon Mar 30 2020 06:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86797 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47100 * 299.99763 * 3 2 1 6 6 H 1.48496 * 109.47468 * 59.99588 * 3 2 1 7 7 C 1.38721 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99963 * 180.02562 * 7 2 1 9 9 O 1.34704 * 119.99764 * 0.02562 * 7 2 1 10 10 N 1.21801 * 116.99783 * 179.97438 * 9 7 2 11 11 C 1.29568 * 120.00190 * 180.02562 * 10 9 7 12 12 C 1.47515 * 119.99762 * 353.87212 * 11 10 9 13 13 C 1.39696 * 120.15458 * 146.91901 * 12 11 10 14 14 C 1.37924 * 119.84025 * 179.79479 * 13 12 11 15 15 C 1.38383 * 120.15849 * 0.45947 * 14 13 12 16 16 C 1.38379 * 120.31411 * 359.79446 * 15 14 13 17 17 C 1.37932 * 120.15529 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00407 * 173.87908 * 11 10 9 19 19 F 1.39896 * 109.46816 * 359.97438 * 18 11 10 20 20 F 1.39894 * 109.47297 * 119.99682 * 18 11 10 21 21 F 1.39898 * 109.46736 * 239.99915 * 18 11 10 22 22 H 0.96998 * 119.99652 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.07934 * 0.02562 * 13 12 11 24 24 H 1.07998 * 119.92408 * 180.20640 * 14 13 12 25 25 H 1.07991 * 119.84620 * 179.76667 * 15 14 13 26 26 H 1.07996 * 119.92120 * 179.97438 * 16 15 14 27 27 H 1.08000 * 120.07603 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0089 -1.2014 0.0005 8 1 3.0888 -1.2014 0.0010 9 8 1.3353 -2.3679 0.0005 10 7 1.9986 -3.3894 0.0005 11 6 1.4104 -4.5439 0.0000 12 6 -0.0562 -4.6244 0.1358 13 6 -0.7660 -5.6400 -0.5094 14 6 -2.1368 -5.7117 -0.3745 15 6 -2.8101 -4.7751 0.3900 16 6 -2.1140 -3.7632 1.0276 17 6 -0.7425 -3.6821 0.9055 18 6 2.2246 -5.8044 -0.1391 19 9 3.5793 -5.4743 -0.2525 20 9 2.0332 -6.6100 0.9885 21 9 1.8169 -6.4988 -1.2831 22 1 -0.4849 0.8401 -0.0004 23 1 -0.2422 -6.3695 -1.1093 24 1 -2.6865 -6.4983 -0.8700 25 1 -3.8838 -4.8338 0.4891 26 1 -2.6459 -3.0354 1.6223 27 1 -0.2006 -2.8916 1.4033 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059559563.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:14 Heat of formation + Delta-G solvation = -99.716422 kcal Electronic energy + Delta-G solvation = -19298.645472 eV Core-core repulsion = 15609.173843 eV Total energy + Delta-G solvation = -3689.471629 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.48183 -47.03028 -46.95629 -40.71659 -38.18694 -34.11768 -32.47392 -30.29102 -29.45665 -27.00463 -24.67491 -22.53338 -21.85516 -20.52622 -18.77740 -18.07534 -17.88402 -17.23941 -16.57282 -15.56021 -15.18101 -14.96565 -14.49531 -14.02712 -13.85499 -13.78612 -13.49482 -13.31701 -13.15529 -13.11515 -12.59139 -12.31584 -12.07947 -11.66428 -11.34487 -11.16943 -10.77023 -10.63384 -10.40170 -9.74853 -8.95795 -8.72811 -8.28693 -7.62648 -6.87477 -4.46147 1.67440 2.07408 2.74684 2.94464 3.04812 3.05950 3.25914 3.68899 4.28362 4.44418 4.68395 4.72582 5.13427 5.40676 5.49411 5.51720 5.65249 5.94400 6.10145 6.24263 6.58361 6.68455 6.91867 7.02976 7.11852 7.25190 7.54468 7.64305 7.88256 8.59301 9.74047 10.29993 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.008258 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.526529 B = 3389.912291 C = 4591.825796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.049 3.951 3 Si 0.959 3.041 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.384 4.384 8 H 0.104 0.896 9 O 0.122 5.878 10 N -0.310 5.310 11 C -0.174 4.174 12 C -0.025 4.025 13 C -0.131 4.131 14 C -0.125 4.125 15 C -0.138 4.138 16 C -0.112 4.112 17 C -0.085 4.085 18 C 0.555 3.445 19 F -0.178 7.178 20 F -0.184 7.184 21 F -0.184 7.184 22 H 0.280 0.720 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.557 -5.179 0.542 5.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.161 4.161 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.121 0.879 9 O 0.026 5.974 10 N -0.002 5.002 11 C -0.334 4.334 12 C -0.027 4.027 13 C -0.150 4.150 14 C -0.143 4.143 15 C -0.157 4.157 16 C -0.130 4.130 17 C -0.104 4.104 18 C 0.500 3.500 19 F -0.159 7.159 20 F -0.165 7.165 21 F -0.165 7.165 22 H 0.090 0.910 23 H 0.140 0.860 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.135 0.865 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.900 -5.163 0.534 5.268 hybrid contribution -0.260 0.431 -0.072 0.508 sum -1.160 -4.732 0.463 4.894 Atomic orbital electron populations 1.70043 1.06081 1.29073 1.41307 1.25525 0.96149 0.99290 0.95163 0.85364 0.79302 0.78516 0.78615 1.18564 1.19649 1.19641 1.21910 0.92847 0.78268 1.53372 0.87867 1.83403 1.35269 1.09949 1.68812 1.70116 1.33292 0.93779 1.03002 1.21274 0.90642 0.90023 1.31443 1.18764 0.91162 0.96063 0.96671 1.21410 0.94385 0.99188 1.00041 1.20870 0.94174 0.99273 0.99955 1.21042 0.99109 0.96069 0.99464 1.20961 0.94147 0.97867 0.99998 1.21297 0.94294 0.97889 0.96934 1.17251 0.76921 0.82737 0.73137 1.93144 1.34398 1.92589 1.95783 1.93154 1.95064 1.75775 1.52553 1.93098 1.90210 1.81367 1.51871 0.90952 0.86021 0.86820 0.86957 0.86457 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.26 13.67 55.48 0.76 -20.50 15 2 C 0.05 1.20 5.49 -17.50 -0.10 1.10 15 3 Si 0.96 18.36 29.55 -169.99 -5.02 13.33 15 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 7 C -0.38 -9.87 10.14 30.91 0.31 -9.56 15 8 H 0.10 2.55 7.83 -52.49 -0.41 2.14 15 9 O 0.12 3.24 6.83 15.13 0.10 3.34 15 10 N -0.31 -7.83 9.99 35.09 0.35 -7.48 15 11 C -0.17 -4.02 6.36 -79.77 -0.51 -4.53 15 12 C -0.02 -0.54 5.50 -105.03 -0.58 -1.12 15 13 C -0.13 -2.54 9.41 -39.15 -0.37 -2.91 15 14 C -0.12 -2.12 10.03 -39.64 -0.40 -2.52 15 15 C -0.14 -2.33 10.04 -39.48 -0.40 -2.72 15 16 C -0.11 -2.11 10.03 -39.64 -0.40 -2.51 15 17 C -0.08 -1.87 8.74 -39.15 -0.34 -2.21 15 18 C 0.55 11.40 3.15 36.01 0.11 11.51 15 19 F -0.18 -3.69 16.86 2.25 0.04 -3.65 15 20 F -0.18 -3.59 17.27 2.25 0.04 -3.55 15 21 F -0.18 -3.50 15.01 2.25 0.03 -3.47 15 22 H 0.28 6.49 8.31 -40.82 -0.34 6.15 15 23 H 0.12 2.21 5.85 -52.49 -0.31 1.90 15 24 H 0.11 1.56 8.06 -52.49 -0.42 1.14 15 25 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 26 H 0.12 1.98 8.06 -52.49 -0.42 1.56 15 27 H 0.13 3.14 6.58 -52.49 -0.35 2.80 15 LS Contribution 262.12 15.07 3.95 3.95 Total: -1.00 -26.68 262.12 -3.87 -30.56 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -1.47 Total: 2.94 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.66 Total: -15.46 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: 1.11 Total: -27.98 kcal Atomic # 8 Polarization: 3.24 SS G_CDS: 0.10 Total: 3.34 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 0.11 Total: -10.68 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.33 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.68 -3.87 -30.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059559563.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.160 kcal (2) G-P(sol) polarization free energy of solvation -26.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds