Wall clock time and date at job start Mon Mar 30 2020 07:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99741 * 2 1 4 4 C 1.38215 * 119.99791 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99971 * 359.97438 * 4 3 2 6 6 C 1.38215 * 120.00076 * 359.95687 * 5 4 3 7 7 C 1.50694 * 120.00027 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47166 * 90.00035 * 7 6 5 9 9 N 1.28798 * 124.98813 * 89.99695 * 8 7 6 10 10 C 1.33646 * 116.05757 * 180.02562 * 9 8 7 11 11 C 1.41152 * 122.86300 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00201 * 180.02562 * 11 10 9 13 13 C 1.39717 * 120.00164 * 0.02562 * 11 10 9 14 14 N 1.31028 * 119.99931 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00327 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47198 * 60.00463 * 15 13 11 17 17 H 1.48501 * 109.47380 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47312 * 300.00485 * 15 13 11 19 19 C 1.37699 * 114.27749 * 0.02562 * 10 9 8 20 20 S 1.70996 * 108.83605 * 359.73126 * 19 10 9 21 21 C 1.38209 * 119.99935 * 179.72199 * 2 1 3 22 22 H 1.09001 * 109.46953 * 89.99972 * 1 2 3 23 23 H 1.09000 * 109.47318 * 209.99570 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.00200 * 1 2 3 25 25 H 1.07997 * 120.00275 * 359.97438 * 3 2 1 26 26 H 1.07991 * 119.99951 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.00280 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.46944 * 210.00111 * 7 6 5 29 29 H 1.08999 * 109.47270 * 329.99904 * 7 6 5 30 30 H 0.97003 * 120.00047 * 179.97438 * 14 13 11 31 31 H 1.07999 * 125.58432 * 180.02562 * 19 10 9 32 32 H 1.07997 * 120.00050 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0000 0.0016 6 6 3.5807 -1.1970 0.0030 7 6 4.3342 -2.5020 0.0048 8 6 4.5852 -2.9353 1.4262 9 7 3.7943 -3.6751 2.1234 10 6 4.1937 -3.9505 3.3687 11 6 3.4387 -4.7466 4.2567 12 1 3.8055 -4.9395 5.2541 13 6 2.2167 -5.2851 3.8456 14 7 1.7719 -5.0515 2.6355 15 14 1.2172 -6.3380 5.0210 16 1 0.8711 -5.5423 6.2262 17 1 -0.0287 -6.7850 4.3479 18 1 2.0149 -7.5243 5.4233 19 6 5.4039 -3.3905 3.7121 20 16 6.0038 -2.5096 2.3749 21 6 2.1981 -1.1969 0.0058 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6583 2.1327 -0.0004 26 1 4.1204 2.1326 0.0001 27 1 5.3518 0.0000 0.0016 28 1 3.7451 -3.2623 -0.5082 29 1 5.2866 -2.3723 -0.5091 30 1 0.9237 -5.4257 2.3499 31 1 5.8961 -3.4949 4.6677 32 1 1.6581 -2.1322 0.0099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061798232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:02 Heat of formation + Delta-G solvation = 30.381716 kcal Electronic energy + Delta-G solvation = -16229.774013 eV Core-core repulsion = 13666.386569 eV Total energy + Delta-G solvation = -2563.387445 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42525 -39.54593 -35.52147 -34.51317 -33.01179 -31.09512 -28.59158 -27.67258 -27.44301 -23.82329 -22.83822 -21.71239 -20.31245 -19.55390 -17.37201 -17.05751 -16.96414 -16.26008 -15.89088 -15.55542 -14.86500 -14.63622 -14.43954 -14.01160 -13.83953 -13.68755 -13.46348 -13.12320 -12.89261 -12.82800 -12.59054 -12.48771 -12.24755 -11.92513 -11.78203 -11.58332 -11.15791 -9.97179 -9.86691 -9.61329 -9.46040 -9.22802 -8.47168 -6.40545 0.30602 0.54495 0.58143 1.12691 1.35241 1.40591 1.47944 1.75918 2.21766 2.35933 2.87693 3.44478 3.72867 3.91151 4.00059 4.12623 4.32664 4.44280 4.52332 4.62591 4.76820 4.82490 4.89737 4.93672 5.02520 5.08980 5.22270 5.33018 5.34426 5.51979 5.61272 5.72713 5.80181 6.14206 6.20294 6.53152 6.86356 7.67941 8.41387 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.007177 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.736006 B = 3900.573829 C = 5031.992758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.082 4.082 7 C 0.006 3.994 8 C 0.070 3.930 9 N -0.435 5.435 10 C 0.196 3.804 11 C -0.474 4.474 12 H 0.080 0.920 13 C 0.028 3.972 14 N -0.779 5.779 15 Si 0.988 3.012 16 H -0.261 1.261 17 H -0.264 1.264 18 H -0.260 1.260 19 C -0.493 4.493 20 S 0.016 5.984 21 C -0.123 4.123 22 H 0.084 0.916 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.135 0.865 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.280 0.720 31 H 0.134 0.866 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 9.483 -7.613 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.143 4.143 6 C -0.084 4.084 7 C -0.035 4.035 8 C -0.214 4.214 9 N -0.150 5.150 10 C 0.074 3.926 11 C -0.508 4.508 12 H 0.098 0.902 13 C -0.191 4.191 14 N -0.402 5.402 15 Si 0.809 3.191 16 H -0.186 1.186 17 H -0.188 1.188 18 H -0.184 1.184 19 C -0.632 4.632 20 S 0.265 5.735 21 C -0.141 4.141 22 H 0.103 0.897 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.164 0.836 26 H 0.168 0.832 27 H 0.153 0.847 28 H 0.108 0.892 29 H 0.132 0.868 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.222 9.781 -8.128 12.776 hybrid contribution -0.705 -1.395 1.542 2.196 sum -1.928 8.385 -6.585 10.835 Atomic orbital electron populations 1.20796 0.89940 1.02854 1.03088 1.20208 0.97329 0.92966 0.99610 1.21336 0.94656 0.97756 1.00831 1.21428 0.94493 0.98403 0.99349 1.21254 1.00650 0.91801 1.00621 1.19704 0.93764 0.94468 1.00450 1.19210 1.01810 0.94919 0.87539 1.28389 0.92855 0.99141 1.01009 1.67360 1.28895 1.12980 1.05736 1.18444 0.90893 0.94226 0.89031 1.19273 1.03970 1.28084 0.99424 0.90168 1.26884 0.98206 0.96682 0.97351 1.70192 1.18021 1.33988 1.18023 0.85174 0.77361 0.78361 0.78254 1.18576 1.18813 1.18400 1.25328 1.06961 1.25359 1.05504 1.82081 1.27701 1.55777 1.07979 1.21051 0.94124 0.98038 1.00905 0.89695 0.92937 0.90066 0.83556 0.83164 0.84690 0.89238 0.86826 0.90929 0.84834 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.64 10.01 71.24 0.71 -1.93 16 2 C -0.10 -2.99 5.88 -19.86 -0.12 -3.11 16 3 C -0.13 -3.23 9.70 22.27 0.22 -3.01 16 4 C -0.12 -2.97 10.05 22.27 0.22 -2.74 16 5 C -0.13 -3.64 9.70 22.27 0.22 -3.42 16 6 C -0.08 -2.84 5.12 -19.87 -0.10 -2.94 16 7 C 0.01 0.23 5.95 29.10 0.17 0.41 16 8 C 0.07 3.26 6.81 88.55 0.60 3.87 16 9 N -0.44 -24.37 8.46 -180.35 -1.53 -25.89 16 10 C 0.20 11.58 6.47 39.46 0.26 11.83 16 11 C -0.47 -27.59 9.23 23.34 0.22 -27.38 16 12 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 13 C 0.03 1.52 5.49 85.17 0.47 1.99 16 14 N -0.78 -43.06 11.69 21.79 0.25 -42.80 16 15 Si 0.99 40.11 29.56 68.60 2.03 42.14 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 19 C -0.49 -26.67 10.98 67.69 0.74 -25.93 16 20 S 0.02 0.71 23.16 -56.49 -1.31 -0.60 16 21 C -0.12 -4.37 9.36 22.27 0.21 -4.16 16 22 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.41 8.08 -2.39 -0.02 1.39 16 24 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 25 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 26 H 0.15 2.72 8.06 -2.92 -0.02 2.70 16 27 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 28 H 0.09 3.30 8.09 -2.39 -0.02 3.28 16 29 H 0.11 3.31 8.09 -2.39 -0.02 3.29 16 30 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 31 H 0.13 7.01 8.06 -2.91 -0.02 6.98 16 32 H 0.10 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -67.76 295.85 4.38 -63.38 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 1.11 Total: 20.32 kcal Atomic # 6 Polarization: -60.35 SS G_CDS: 3.82 Total: -56.54 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.27 Total: -68.70 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -1.31 Total: -0.60 kcal Total: -67.76 4.38 -63.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.760 kcal (2) G-P(sol) polarization free energy of solvation -67.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds