Wall clock time and date at job start Mon Mar 30 2020 07:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38215 * 119.99743 * 359.94741 * 5 4 3 7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 8 8 C 1.50698 * 120.00206 * 0.04414 * 7 2 1 9 9 C 1.50697 * 109.47540 * 85.21031 * 8 7 2 10 10 N 1.28792 * 124.99104 * 89.72423 * 9 8 7 11 11 C 1.33644 * 116.06343 * 179.78971 * 10 9 8 12 12 C 1.41156 * 122.86553 * 180.27390 * 11 10 9 13 13 H 1.08005 * 119.99556 * 180.24648 * 12 11 10 14 14 C 1.39712 * 120.00057 * 0.24517 * 12 11 10 15 15 N 1.31014 * 120.00060 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47365 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47277 * 119.99806 * 16 14 12 19 19 H 1.48506 * 109.47137 * 239.99843 * 16 14 12 20 20 C 1.37706 * 114.27324 * 0.50026 * 11 10 9 21 21 S 1.70996 * 108.83764 * 359.73918 * 20 11 10 22 22 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 23 23 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 24 24 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 25 25 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 27 27 H 1.08005 * 120.00210 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.99700 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.47305 * 205.21506 * 8 7 2 30 30 H 1.09010 * 109.46681 * 325.21211 * 8 7 2 31 31 H 0.97000 * 120.00139 * 180.02562 * 15 14 12 32 32 H 1.07996 * 125.58479 * 179.74419 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0008 7 6 2.1981 -1.1969 -0.0045 8 6 1.4447 -2.5020 -0.0105 9 6 1.0917 -2.8719 -1.4281 10 7 1.8317 -3.5742 -2.2142 11 6 1.3411 -3.7996 -3.4367 12 6 2.0285 -4.5554 -4.4107 13 1 1.5901 -4.7053 -5.3863 14 6 3.2760 -5.1095 -4.1127 15 7 3.8075 -4.9279 -2.9290 16 14 4.1860 -6.1091 -5.4018 17 1 3.3773 -6.1660 -6.6460 18 1 5.4951 -5.4700 -5.6906 19 1 4.4091 -7.4865 -4.8936 20 6 0.1098 -3.2274 -3.6669 21 16 -0.3879 -2.4015 -2.2548 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5139 25 1 1.6582 2.1327 0.0004 26 1 4.1203 2.1328 0.0101 27 1 5.3517 0.0002 0.0099 28 1 4.1207 -2.1321 0.0011 29 1 2.0680 -3.2833 0.4244 30 1 0.5317 -2.3971 0.5757 31 1 4.6738 -5.3123 -2.7222 32 1 -0.4499 -3.2900 -4.5884 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061798238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:05 Heat of formation + Delta-G solvation = 50.027786 kcal Electronic energy + Delta-G solvation = -16433.171702 eV Core-core repulsion = 13870.636175 eV Total energy + Delta-G solvation = -2562.535527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.25410 -37.65797 -33.75009 -32.85052 -31.88247 -29.35199 -27.17794 -26.25914 -25.47750 -22.18051 -21.47036 -20.28306 -18.59550 -17.60826 -16.06883 -15.23150 -15.14447 -15.04819 -14.66978 -13.96984 -13.37473 -13.02190 -12.83849 -12.68351 -12.38741 -12.15295 -11.81629 -11.69979 -11.48835 -11.23732 -11.04257 -10.71082 -10.60121 -10.52840 -10.30262 -9.63191 -9.26398 -8.45803 -8.28010 -7.96388 -7.88525 -7.28867 -6.51806 -4.32996 1.67134 1.75280 2.35350 2.96248 3.05161 3.10738 3.15909 3.70989 4.02270 4.09628 4.32279 5.12403 5.15026 5.29204 5.32540 5.43751 5.54379 5.57381 5.73502 5.86667 6.00600 6.08681 6.18713 6.26098 6.37838 6.55084 6.80026 6.85601 6.86400 7.06063 7.13767 7.28013 7.37814 7.55008 8.21962 8.57296 8.91196 9.63595 10.35530 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.007004 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.602285 B = 3996.758065 C = 4870.438703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.127 4.127 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.093 4.093 7 C -0.068 4.068 8 C 0.002 3.998 9 C 0.066 3.934 10 N -0.393 5.393 11 C 0.226 3.774 12 C -0.432 4.432 13 H 0.083 0.917 14 C 0.072 3.928 15 N -0.751 5.751 16 Si 0.909 3.091 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.458 4.458 21 S -0.042 6.042 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.272 0.728 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.722 7.606 7.356 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.111 4.111 7 C -0.070 4.070 8 C -0.039 4.039 9 C -0.218 4.218 10 N -0.106 5.106 11 C 0.104 3.896 12 C -0.467 4.467 13 H 0.101 0.899 14 C -0.150 4.150 15 N -0.374 5.374 16 Si 0.734 3.266 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.597 4.597 21 S 0.206 5.794 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.144 0.856 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.872 7.873 7.871 11.166 hybrid contribution 0.957 -0.963 -1.553 2.062 sum 0.085 6.910 6.318 9.364 Atomic orbital electron populations 1.20943 0.91431 1.02140 1.03265 1.19754 0.96008 0.92566 0.99247 1.20900 0.94187 0.97117 1.02321 1.21022 0.94303 0.97706 1.01267 1.21061 0.99553 0.92580 1.01635 1.21127 0.93658 0.98388 0.97955 1.19597 0.93728 0.93887 0.99766 1.19065 0.99901 0.94533 0.90389 1.27486 0.93195 1.01612 0.99557 1.67327 1.28634 1.11389 1.03279 1.18013 0.89199 0.93524 0.88850 1.18986 1.01385 1.27645 0.98652 0.89883 1.25971 0.97506 0.95606 0.95913 1.70115 1.14701 1.33132 1.19452 0.86243 0.79517 0.79497 0.81351 1.18530 1.19937 1.19915 1.25103 1.06332 1.24994 1.03281 1.82528 1.27843 1.58417 1.10602 0.90071 0.91301 0.92056 0.86545 0.86706 0.86532 0.85582 0.88895 0.89766 0.91736 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 8.98 36.00 0.32 -1.35 16 2 C -0.08 -1.20 5.88 -104.63 -0.62 -1.81 16 3 C -0.13 -1.83 9.70 -39.58 -0.38 -2.22 16 4 C -0.12 -1.76 10.05 -39.58 -0.40 -2.15 16 5 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 6 C -0.09 -1.62 9.68 -39.58 -0.38 -2.00 16 7 C -0.07 -1.20 5.12 -104.63 -0.54 -1.74 16 8 C 0.00 0.04 5.46 -29.04 -0.16 -0.12 16 9 C 0.07 1.51 6.81 -13.55 -0.09 1.41 16 10 N -0.39 -10.66 8.46 -8.36 -0.07 -10.73 16 11 C 0.23 6.42 6.47 -86.16 -0.56 5.86 16 12 C -0.43 -12.15 9.23 -37.92 -0.35 -12.50 16 13 H 0.08 2.24 7.84 -52.48 -0.41 1.82 16 14 C 0.07 1.90 5.49 -17.35 -0.10 1.81 16 15 N -0.75 -20.30 11.69 55.54 0.65 -19.65 16 16 Si 0.91 19.39 29.56 -169.99 -5.02 14.37 16 17 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C -0.46 -12.00 10.98 30.54 0.34 -11.66 16 21 S -0.04 -0.92 21.35 -107.50 -2.30 -3.21 16 22 H 0.08 1.23 6.95 -51.93 -0.36 0.87 16 23 H 0.07 0.92 6.03 -51.93 -0.31 0.60 16 24 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 28 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.09 1.68 8.05 -51.93 -0.42 1.26 16 30 H 0.08 1.31 6.16 -51.92 -0.32 0.99 16 31 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 32 H 0.14 3.40 8.06 -52.49 -0.42 2.97 16 LS Contribution 287.97 15.07 4.34 4.34 Total: -1.00 -30.45 287.97 -9.20 -39.65 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.49 Total: 4.09 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: -3.31 Total: -28.86 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.58 Total: -30.38 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.45 -9.20 -39.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.678 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds