Wall clock time and date at job start Mon Mar 30 2020 07:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38215 * 119.99743 * 359.94741 * 5 4 3 7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 8 8 C 1.50698 * 120.00206 * 0.04414 * 7 2 1 9 9 C 1.50697 * 109.47540 * 85.21031 * 8 7 2 10 10 N 1.28792 * 124.99104 * 89.72423 * 9 8 7 11 11 C 1.33644 * 116.06343 * 179.78971 * 10 9 8 12 12 C 1.41156 * 122.86553 * 180.27390 * 11 10 9 13 13 H 1.08005 * 119.99556 * 180.24648 * 12 11 10 14 14 C 1.39712 * 120.00057 * 0.24517 * 12 11 10 15 15 N 1.31014 * 120.00060 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99975 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47365 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47277 * 119.99806 * 16 14 12 19 19 H 1.48506 * 109.47137 * 239.99843 * 16 14 12 20 20 C 1.37706 * 114.27324 * 0.50026 * 11 10 9 21 21 S 1.70996 * 108.83764 * 359.73918 * 20 11 10 22 22 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 23 23 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 24 24 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 25 25 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 27 27 H 1.08005 * 120.00210 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.99700 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.47305 * 205.21506 * 8 7 2 30 30 H 1.09010 * 109.46681 * 325.21211 * 8 7 2 31 31 H 0.97000 * 120.00139 * 180.02562 * 15 14 12 32 32 H 1.07996 * 125.58479 * 179.74419 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0008 7 6 2.1981 -1.1969 -0.0045 8 6 1.4447 -2.5020 -0.0105 9 6 1.0917 -2.8719 -1.4281 10 7 1.8317 -3.5742 -2.2142 11 6 1.3411 -3.7996 -3.4367 12 6 2.0285 -4.5554 -4.4107 13 1 1.5901 -4.7053 -5.3863 14 6 3.2760 -5.1095 -4.1127 15 7 3.8075 -4.9279 -2.9290 16 14 4.1860 -6.1091 -5.4018 17 1 3.3773 -6.1660 -6.6460 18 1 5.4951 -5.4700 -5.6906 19 1 4.4091 -7.4865 -4.8936 20 6 0.1098 -3.2274 -3.6669 21 16 -0.3879 -2.4015 -2.2548 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5139 25 1 1.6582 2.1327 0.0004 26 1 4.1203 2.1328 0.0101 27 1 5.3517 0.0002 0.0099 28 1 4.1207 -2.1321 0.0011 29 1 2.0680 -3.2833 0.4244 30 1 0.5317 -2.3971 0.5757 31 1 4.6738 -5.3123 -2.7222 32 1 -0.4499 -3.2900 -4.5884 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061798238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:05 Heat of formation + Delta-G solvation = 33.695099 kcal Electronic energy + Delta-G solvation = -16433.879940 eV Core-core repulsion = 13870.636175 eV Total energy + Delta-G solvation = -2563.243765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.52999 -39.52076 -35.45465 -34.42392 -33.15496 -31.08273 -28.64614 -27.68300 -27.30942 -23.79600 -22.80537 -21.67626 -20.41448 -19.55181 -17.32043 -17.03841 -16.96108 -16.37781 -15.91300 -15.60504 -14.94367 -14.58803 -14.31298 -13.97130 -13.82291 -13.68892 -13.43685 -13.08897 -12.92106 -12.88032 -12.63489 -12.48793 -12.17870 -11.82189 -11.72931 -11.51985 -11.16241 -9.94703 -9.85304 -9.62048 -9.41093 -9.21878 -8.46798 -6.39518 0.32398 0.54156 0.58907 1.14166 1.35248 1.37411 1.50958 1.77418 2.21833 2.36516 2.88764 3.45125 3.71859 3.95772 4.01195 4.14684 4.22712 4.36518 4.54329 4.68408 4.80123 4.89659 4.93379 4.97510 5.05305 5.09876 5.21282 5.33937 5.40907 5.53131 5.63776 5.67559 5.83096 6.15460 6.20551 6.54045 6.87461 7.69964 8.42089 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.007004 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.602285 B = 3996.758065 C = 4870.438703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.085 4.085 3 C -0.129 4.129 4 C -0.121 4.121 5 C -0.138 4.138 6 C -0.118 4.118 7 C -0.092 4.092 8 C 0.005 3.995 9 C 0.070 3.930 10 N -0.438 5.438 11 C 0.195 3.805 12 C -0.473 4.473 13 H 0.079 0.921 14 C 0.028 3.972 15 N -0.780 5.780 16 Si 0.989 3.011 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.263 1.263 20 C -0.496 4.496 21 S 0.030 5.970 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.134 0.866 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.280 0.720 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 9.190 7.987 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.156 4.156 6 C -0.136 4.136 7 C -0.093 4.093 8 C -0.036 4.036 9 C -0.214 4.214 10 N -0.152 5.152 11 C 0.073 3.927 12 C -0.508 4.508 13 H 0.097 0.903 14 C -0.192 4.192 15 N -0.404 5.404 16 Si 0.809 3.191 17 H -0.183 1.183 18 H -0.189 1.189 19 H -0.187 1.187 20 C -0.634 4.634 21 S 0.279 5.721 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.166 0.834 26 H 0.166 0.834 27 H 0.152 0.848 28 H 0.126 0.874 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.090 0.910 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.842 9.475 8.517 12.767 hybrid contribution 0.882 -1.324 -1.652 2.294 sum 0.040 8.150 6.865 10.656 Atomic orbital electron populations 1.20975 0.90073 1.03920 1.02765 1.20047 0.97168 0.92425 0.98882 1.21328 0.94598 0.97797 1.00916 1.21447 0.94580 0.98454 0.99377 1.21335 1.00670 0.92368 1.01251 1.21186 0.94060 0.98767 0.99612 1.19597 0.93836 0.94025 1.01846 1.19210 1.01411 0.95184 0.87817 1.28341 0.92973 0.99291 1.00808 1.67348 1.30373 1.14026 1.03494 1.18450 0.90176 0.94177 0.89896 1.19316 1.03052 1.29465 0.98921 0.90265 1.26881 0.97699 0.96315 0.98263 1.70201 1.15265 1.33683 1.21240 0.85067 0.77975 0.77913 0.78156 1.18253 1.18938 1.18747 1.25416 1.06482 1.26144 1.05403 1.82029 1.26063 1.56546 1.07478 0.91434 0.91004 0.88957 0.83432 0.83388 0.84774 0.87373 0.89435 0.86823 0.90992 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 8.98 71.24 0.64 -2.36 16 2 C -0.08 -2.51 5.88 -19.87 -0.12 -2.63 16 3 C -0.13 -3.28 9.70 22.27 0.22 -3.06 16 4 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 5 C -0.14 -4.03 10.05 22.27 0.22 -3.81 16 6 C -0.12 -4.13 9.68 22.27 0.22 -3.91 16 7 C -0.09 -3.17 5.12 -19.87 -0.10 -3.27 16 8 C 0.00 0.17 5.46 29.10 0.16 0.33 16 9 C 0.07 3.22 6.81 88.55 0.60 3.83 16 10 N -0.44 -24.52 8.46 -180.35 -1.53 -26.04 16 11 C 0.20 11.51 6.47 39.46 0.26 11.76 16 12 C -0.47 -27.66 9.23 23.34 0.22 -27.44 16 13 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 14 C 0.03 1.49 5.49 85.17 0.47 1.96 16 15 N -0.78 -43.37 11.69 21.79 0.25 -43.12 16 16 Si 0.99 40.36 29.56 68.60 2.03 42.38 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 C -0.50 -26.64 10.98 67.69 0.74 -25.90 16 21 S 0.03 1.30 21.35 -56.49 -1.21 0.09 16 22 H 0.07 1.88 6.95 -2.39 -0.02 1.86 16 23 H 0.07 1.71 6.03 -2.39 -0.01 1.69 16 24 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 25 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 26 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.11 4.04 8.06 -2.91 -0.02 4.01 16 29 H 0.09 3.24 8.05 -2.39 -0.02 3.22 16 30 H 0.11 3.36 6.16 -2.38 -0.01 3.34 16 31 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 32 H 0.13 6.92 8.06 -2.91 -0.02 6.90 16 Total: -1.00 -67.98 287.97 4.42 -63.56 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.13 Total: 20.43 kcal Atomic # 6 Polarization: -61.05 SS G_CDS: 3.74 Total: -57.31 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.27 Total: -69.16 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.21 Total: 0.09 kcal Total: -67.98 4.42 -63.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.256 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds