Wall clock time and date at job start Mon Mar 30 2020 07:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86794 * 120.00109 * 2 1 4 4 H 1.48502 * 109.47089 * 90.00247 * 3 2 1 5 5 H 1.48495 * 109.47268 * 209.99864 * 3 2 1 6 6 H 1.48501 * 109.47276 * 330.00229 * 3 2 1 7 7 C 1.39722 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00443 * 14.39496 * 7 2 1 9 9 C 1.41161 * 120.00088 * 194.39287 * 7 2 1 10 10 C 1.37693 * 122.86481 * 188.13883 * 9 7 2 11 11 S 1.70997 * 108.84072 * 179.89942 * 10 9 7 12 12 C 1.75892 * 90.80755 * 0.30568 * 11 10 9 13 13 C 1.50703 * 124.99395 * 179.81720 * 12 11 10 14 14 C 1.52999 * 109.47151 * 270.00091 * 13 12 11 15 15 C 1.50702 * 109.46772 * 180.02562 * 14 13 12 16 16 C 1.38238 * 119.99697 * 269.72167 * 15 14 13 17 17 C 1.38234 * 119.99658 * 179.77027 * 16 15 14 18 18 C 1.38229 * 120.00058 * 0.50973 * 17 16 15 19 19 C 1.38237 * 120.00127 * 359.74508 * 18 17 16 20 20 C 1.38229 * 120.00157 * 90.00168 * 15 14 13 21 21 N 1.28806 * 110.01727 * 359.81619 * 12 11 10 22 22 H 0.97002 * 120.00146 * 174.77332 * 1 2 3 23 23 H 1.08006 * 125.57973 * 0.02562 * 10 9 7 24 24 H 1.09003 * 109.46526 * 30.00166 * 13 12 11 25 25 H 1.09002 * 109.46902 * 149.99892 * 13 12 11 26 26 H 1.09005 * 109.46763 * 299.99724 * 14 13 12 27 27 H 1.09003 * 109.47242 * 59.99558 * 14 13 12 28 28 H 1.08007 * 119.99737 * 0.02562 * 16 15 14 29 29 H 1.08003 * 119.99492 * 180.22982 * 17 16 15 30 30 H 1.08001 * 120.00253 * 179.72527 * 18 17 16 31 31 H 1.08004 * 119.99895 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.99966 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4918 2.0463 1.4001 5 1 3.5417 1.4401 -0.7000 6 1 1.4417 2.6527 -0.7000 7 6 2.0088 -1.2100 -0.0005 8 1 1.4943 -2.1306 -0.2335 9 6 3.3872 -1.2294 0.3033 10 6 4.1675 -2.3551 0.1628 11 16 5.7699 -1.9775 0.6252 12 6 5.3003 -0.3228 0.9927 13 6 6.2304 0.7456 1.5073 14 6 6.2404 0.7195 3.0370 15 6 7.1701 1.7883 3.5515 16 6 8.5029 1.4965 3.7737 17 6 9.3566 2.4781 4.2410 18 6 8.8753 3.7485 4.4962 19 6 7.5414 4.0389 4.2790 20 6 6.6888 3.0587 3.8067 21 7 4.0447 -0.1582 0.7574 22 1 -0.4850 -0.8366 -0.0765 23 1 3.8242 -3.3184 -0.1848 24 1 7.2378 0.5607 1.1341 25 1 5.8887 1.7216 1.1627 26 1 5.2330 0.9043 3.4101 27 1 6.5821 -0.2565 3.3816 28 1 8.8780 0.5027 3.5781 29 1 10.3988 2.2511 4.4111 30 1 9.5414 4.5143 4.8656 31 1 7.1653 5.0314 4.4788 32 1 5.6466 3.2855 3.6370 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061798244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:48 Heat of formation + Delta-G solvation = 16.476968 kcal Electronic energy + Delta-G solvation = -15926.790076 eV Core-core repulsion = 13362.799677 eV Total energy + Delta-G solvation = -2563.990400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39816 -39.94514 -35.98770 -35.05771 -32.06215 -31.68756 -29.77606 -27.85534 -25.91666 -23.37461 -22.82390 -21.74382 -21.02717 -20.21145 -17.93170 -17.56281 -16.60521 -16.20193 -16.06426 -15.44460 -15.19641 -14.94377 -14.73463 -14.26993 -14.15807 -13.92684 -13.60616 -13.27805 -12.96521 -12.70788 -12.47637 -12.16221 -11.92935 -11.83377 -11.73652 -11.64077 -11.14993 -10.20293 -9.96671 -9.73887 -9.63767 -9.48508 -9.32750 -6.65896 0.12223 0.52232 0.58288 0.82416 1.42741 1.47254 1.53448 1.92364 2.08203 2.34851 2.94142 3.15177 3.35784 3.93606 4.02356 4.24243 4.27881 4.33677 4.37946 4.50852 4.71077 4.71643 4.83438 4.94020 5.02917 5.11173 5.18792 5.26229 5.27614 5.40204 5.65895 5.70501 5.81407 5.94864 6.10442 6.20704 6.65432 7.16179 7.96227 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.023695 B = 0.005883 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.380209 B = 4758.533609 C = 5756.774152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.017 3.983 3 Si 1.157 2.843 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.308 1.308 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.193 3.807 10 C -0.471 4.471 11 S 0.094 5.906 12 C 0.080 3.920 13 C -0.031 4.031 14 C -0.069 4.069 15 C -0.088 4.088 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.130 4.130 19 C -0.127 4.127 20 C -0.134 4.134 21 N -0.513 5.513 22 H 0.276 0.724 23 H 0.137 0.863 24 H 0.113 0.887 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.365 7.171 8.245 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.198 4.198 3 Si 0.983 3.017 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.239 1.239 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.072 3.928 10 C -0.610 4.610 11 S 0.344 5.656 12 C -0.200 4.200 13 C -0.072 4.072 14 C -0.108 4.108 15 C -0.089 4.089 16 C -0.140 4.140 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.144 4.144 20 C -0.152 4.152 21 N -0.233 5.233 22 H 0.087 0.913 23 H 0.155 0.845 24 H 0.131 0.869 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.155 0.845 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.154 0.846 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.681 8.608 8.417 23.072 hybrid contribution -1.951 -2.550 -0.593 3.265 sum 17.730 6.058 7.824 20.304 Atomic orbital electron populations 1.70734 1.08330 1.32340 1.35532 1.28377 0.95644 1.07319 0.88414 0.82154 0.72440 0.68586 0.78478 1.19930 1.20023 1.23891 1.19997 0.93130 0.96179 1.46330 0.92851 1.18139 0.94648 0.86570 0.93483 1.25388 0.98096 1.04411 1.33073 1.82205 1.09484 1.08104 1.65815 1.28262 0.93537 0.97903 1.00268 1.20381 0.96907 0.94426 0.95484 1.20503 0.98845 0.98462 0.92956 1.19821 0.94845 0.94510 0.99678 1.21315 0.92514 1.00641 0.99550 1.21465 1.00661 0.93189 0.98802 1.21482 0.95688 0.97562 1.00048 1.21398 0.94187 0.99654 0.99207 1.21286 1.00368 0.93427 1.00163 1.66194 1.07942 1.30439 1.18698 0.91315 0.84539 0.86906 0.89424 0.92141 0.89600 0.84491 0.83776 0.83949 0.84598 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.70 13.67 21.79 0.30 -49.40 16 2 C 0.02 0.97 5.51 85.17 0.47 1.44 16 3 Si 1.16 56.69 26.12 68.60 1.79 58.48 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.27 -13.15 6.44 99.48 0.64 -12.51 16 6 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.52 -31.23 9.62 23.35 0.22 -31.00 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 9 C 0.19 10.58 6.17 39.46 0.24 10.82 16 10 C -0.47 -23.22 10.98 67.69 0.74 -22.47 16 11 S 0.09 3.54 23.16 -56.49 -1.31 2.23 16 12 C 0.08 3.18 6.82 88.55 0.60 3.78 16 13 C -0.03 -0.89 5.80 29.85 0.17 -0.72 16 14 C -0.07 -1.80 5.33 29.85 0.16 -1.64 16 15 C -0.09 -2.02 5.13 -19.87 -0.10 -2.12 16 16 C -0.12 -2.31 9.70 22.27 0.22 -2.10 16 17 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 18 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 19 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 20 C -0.13 -3.07 9.70 22.27 0.22 -2.85 16 21 N -0.51 -25.23 5.59 -180.34 -1.01 -26.24 16 22 H 0.28 15.96 8.73 -92.71 -0.81 15.15 16 23 H 0.14 6.68 8.06 -2.91 -0.02 6.65 16 24 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.06 1.82 8.09 -2.38 -0.02 1.80 16 27 H 0.09 2.06 8.08 -2.39 -0.02 2.04 16 28 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -66.52 291.69 4.40 -62.13 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.00 Total: 5.47 kcal Atomic # 6 Polarization: -56.28 SS G_CDS: 3.62 Total: -52.66 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -0.71 Total: -75.64 kcal Atomic # 14 Polarization: 56.69 SS G_CDS: 1.79 Total: 58.48 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.31 Total: 2.23 kcal Total: -66.52 4.40 -62.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.605 kcal (2) G-P(sol) polarization free energy of solvation -66.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds