Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99914 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99803 * 3 2 1 6 6 H 1.48500 * 109.47209 * 149.99768 * 3 2 1 7 7 C 1.37875 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47294 * 179.97438 * 11 10 9 13 13 C 1.35045 * 126.03853 * 124.71045 * 12 11 10 14 14 C 1.35374 * 107.72637 * 179.87744 * 13 12 11 15 15 Cl 1.73603 * 126.04301 * 180.13059 * 14 13 12 16 16 C 1.39931 * 107.91119 * 0.39052 * 14 13 12 17 17 N 1.48017 * 125.89347 * 179.75956 * 16 14 13 18 18 O 1.21799 * 119.99473 * 179.97438 * 17 16 14 19 19 O 1.21795 * 120.00279 * 359.97438 * 17 16 14 20 20 N 1.30857 * 108.21050 * 359.75819 * 16 14 13 21 21 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 23 23 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 26 26 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 27 27 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 28 28 H 1.07995 * 126.13515 * 359.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5514 -2.6366 0.0022 12 7 6.0398 -4.0178 0.0040 13 6 6.8909 -4.5607 -0.8931 14 6 7.0931 -5.8519 -0.5402 15 17 8.1099 -6.9898 -1.3680 16 6 6.3330 -6.1089 0.6062 17 7 6.2565 -7.4004 1.3252 18 8 5.5575 -7.5046 2.3173 19 8 6.8924 -8.3589 0.9249 20 7 5.7015 -5.0103 0.9329 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6805 -0.8889 24 1 3.6579 -3.1498 0.8925 25 1 3.6585 -3.1510 -0.8874 26 1 5.9148 -2.1236 -0.8882 27 1 5.9149 -2.1220 0.8918 28 1 7.3323 -4.0551 -1.7391 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069760103.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = 68.859425 kcal Electronic energy + Delta-G solvation = -16363.958383 eV Core-core repulsion = 13253.513393 eV Total energy + Delta-G solvation = -3110.444990 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.051 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.59731 -41.64498 -37.01870 -36.65309 -35.60752 -33.22786 -31.75946 -30.63063 -28.50442 -26.42720 -23.60855 -22.11875 -21.68467 -20.50565 -19.10962 -18.66679 -17.85506 -17.30844 -16.63986 -15.82276 -15.27314 -14.58795 -14.49092 -14.24868 -13.09260 -12.69593 -12.43179 -12.13709 -12.06604 -11.75610 -11.64736 -11.50905 -11.26121 -11.09955 -10.91846 -10.58241 -10.25913 -10.11806 -9.91581 -9.43238 -9.13338 -8.70950 -6.19674 -4.20575 -0.10280 0.54388 1.10800 1.50019 1.87535 2.31129 3.16577 3.24322 3.26258 3.68416 4.24145 4.28683 4.54342 4.75840 4.90482 4.99285 5.13087 5.24122 5.86319 5.98789 6.09889 6.28791 6.43676 6.50013 6.94317 7.06541 7.52686 7.56708 8.34676 8.84086 9.40031 10.93482 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.035063 B = 0.004086 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.363987 B = 6851.523187 C = 7358.161050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.118 4.118 11 C 0.117 3.883 12 N -0.305 5.305 13 C 0.086 3.914 14 C -0.148 4.148 15 Cl 0.000 7.000 16 C 0.120 3.880 17 N 0.057 4.943 18 O -0.127 6.127 19 O -0.122 6.122 20 N -0.187 5.187 21 H 0.265 0.735 22 H 0.021 0.979 23 H 0.015 0.985 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.746 -8.092 -3.328 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.156 4.156 11 C -0.001 4.001 12 N -0.092 5.092 13 C -0.062 4.062 14 C -0.188 4.188 15 Cl 0.028 6.972 16 C -0.124 4.124 17 N 0.584 4.416 18 O -0.346 6.346 19 O -0.340 6.340 20 N -0.021 5.021 21 H 0.075 0.925 22 H 0.040 0.960 23 H 0.034 0.966 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 16.881 -6.815 -2.918 18.437 hybrid contribution 0.866 0.225 -0.504 1.027 sum 17.747 -6.589 -3.422 19.238 Atomic orbital electron populations 1.69904 1.06342 1.27140 1.50156 1.25034 0.94775 0.99214 0.94341 0.86767 0.80292 0.83602 0.78499 1.20212 1.21168 1.19052 1.21004 0.88921 0.94737 1.51883 0.90889 1.19521 0.97965 0.90381 0.96728 1.21910 0.88403 1.01850 1.03480 1.22785 0.99367 0.72620 1.05278 1.49219 1.31745 1.10609 1.17615 1.22599 0.94645 0.92086 0.96848 1.20293 1.06530 0.93489 0.98520 1.98391 1.64928 1.57581 1.76299 1.22525 1.04486 0.88483 0.96873 1.42129 0.99502 0.99971 0.99974 1.94636 1.36583 1.89576 1.13763 1.94604 1.42704 1.26305 1.70345 1.77576 1.17669 0.94594 1.12211 0.92479 0.96040 0.96626 0.90583 0.91637 0.86900 0.88052 0.77552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.96 55.43 0.77 -25.96 15 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 15 3 Si 0.88 20.19 27.47 -169.99 -4.67 15.52 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.27 -5.69 6.54 56.52 0.37 -5.32 15 7 C -0.53 -14.13 9.66 -34.44 -0.33 -14.46 15 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 15 9 C -0.01 -0.16 4.04 -27.88 -0.11 -0.28 15 10 C -0.12 -1.97 5.34 -26.73 -0.14 -2.12 15 11 C 0.12 1.35 6.51 -4.05 -0.03 1.33 15 12 N -0.30 -3.72 3.68 -61.33 -0.23 -3.95 15 13 C 0.09 0.83 11.43 -17.16 -0.20 0.63 15 14 C -0.15 -1.75 6.63 -39.97 -0.26 -2.02 15 15 Cl 0.00 0.00 27.87 -51.86 -1.45 -1.45 15 16 C 0.12 1.76 8.15 -146.37 -1.19 0.57 15 17 N 0.06 0.89 4.45 33.03 0.15 1.04 15 18 O -0.13 -2.10 19.23 -29.46 -0.57 -2.67 15 19 O -0.12 -1.81 17.75 -29.46 -0.52 -2.33 15 20 N -0.19 -2.88 12.38 33.03 0.41 -2.48 15 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.02 0.44 7.20 -51.93 -0.37 0.06 15 23 H 0.02 0.30 7.57 -51.93 -0.39 -0.09 15 24 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 26 H 0.11 0.92 8.07 -51.93 -0.42 0.50 15 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 28 H 0.21 1.00 8.06 -52.49 -0.42 0.58 15 LS Contribution 276.41 15.07 4.17 4.17 Total: -1.00 -31.02 276.41 -6.76 -37.78 By element: Atomic # 1 Polarization: -2.66 SS G_CDS: -2.46 Total: -5.13 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -2.37 Total: -14.54 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 1.10 Total: -31.35 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -1.09 Total: -5.00 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.45 Total: -1.45 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.02 -6.76 -37.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069760103.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.640 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds