Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99914 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99803 * 3 2 1 6 6 H 1.48500 * 109.47209 * 149.99768 * 3 2 1 7 7 C 1.37875 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.47294 * 179.97438 * 11 10 9 13 13 C 1.35045 * 126.03853 * 124.71045 * 12 11 10 14 14 C 1.35374 * 107.72637 * 179.87744 * 13 12 11 15 15 Cl 1.73603 * 126.04301 * 180.13059 * 14 13 12 16 16 C 1.39931 * 107.91119 * 0.39052 * 14 13 12 17 17 N 1.48017 * 125.89347 * 179.75956 * 16 14 13 18 18 O 1.21799 * 119.99473 * 179.97438 * 17 16 14 19 19 O 1.21795 * 120.00279 * 359.97438 * 17 16 14 20 20 N 1.30857 * 108.21050 * 359.75819 * 16 14 13 21 21 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 23 23 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 26 26 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 27 27 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 28 28 H 1.07995 * 126.13515 * 359.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5514 -2.6366 0.0022 12 7 6.0398 -4.0178 0.0040 13 6 6.8909 -4.5607 -0.8931 14 6 7.0931 -5.8519 -0.5402 15 17 8.1099 -6.9898 -1.3680 16 6 6.3330 -6.1089 0.6062 17 7 6.2565 -7.4004 1.3252 18 8 5.5575 -7.5046 2.3173 19 8 6.8924 -8.3589 0.9249 20 7 5.7015 -5.0103 0.9329 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6805 -0.8889 24 1 3.6579 -3.1498 0.8925 25 1 3.6585 -3.1510 -0.8874 26 1 5.9148 -2.1236 -0.8882 27 1 5.9149 -2.1220 0.8918 28 1 7.3323 -4.0551 -1.7391 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069760103.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = 49.811486 kcal Electronic energy + Delta-G solvation = -16364.784364 eV Core-core repulsion = 13253.513393 eV Total energy + Delta-G solvation = -3111.270970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.66980 -42.69928 -37.98096 -37.74550 -36.87960 -34.89775 -33.23557 -31.67476 -29.83765 -27.83044 -25.01313 -23.06195 -22.88528 -21.95979 -20.16601 -19.80122 -19.05568 -19.02038 -17.87501 -16.86531 -16.43469 -16.04739 -15.62089 -15.35315 -14.80635 -14.14951 -13.64973 -13.28904 -13.14153 -12.96753 -12.87121 -12.79113 -12.62342 -12.49049 -12.06900 -11.92669 -11.77925 -11.59183 -11.46910 -11.21347 -10.77574 -10.05662 -8.30014 -6.36995 -1.26583 -0.49805 0.24479 0.62288 0.85095 1.38709 1.39734 1.42736 1.53306 2.37010 2.77647 3.06073 3.42783 3.66846 3.89590 3.96389 4.01734 4.30361 4.61454 4.66810 4.90229 4.94141 5.28958 5.40924 5.44463 5.55139 5.63667 6.24397 6.33962 6.72670 7.28004 8.87387 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.035063 B = 0.004086 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.363987 B = 6851.523187 C = 7358.161050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.231 1.231 7 C -0.541 4.541 8 H 0.019 0.981 9 C -0.006 4.006 10 C -0.111 4.111 11 C 0.125 3.875 12 N -0.303 5.303 13 C 0.120 3.880 14 C -0.159 4.159 15 Cl 0.012 6.988 16 C 0.105 3.895 17 N 0.055 4.945 18 O -0.180 6.180 19 O -0.097 6.097 20 N -0.239 5.239 21 H 0.266 0.734 22 H 0.033 0.967 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.166 0.834 27 H 0.116 0.884 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.372 -6.205 -5.109 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.200 4.200 3 Si 0.782 3.218 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.154 1.154 7 C -0.579 4.579 8 H 0.037 0.963 9 C -0.044 4.044 10 C -0.149 4.149 11 C 0.008 3.992 12 N -0.090 5.090 13 C -0.028 4.028 14 C -0.200 4.200 15 Cl 0.040 6.960 16 C -0.137 4.137 17 N 0.579 4.421 18 O -0.386 6.386 19 O -0.324 6.324 20 N -0.072 5.072 21 H 0.075 0.925 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.183 0.817 27 H 0.134 0.866 28 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 20.461 -4.936 -4.610 21.547 hybrid contribution -0.265 -0.485 -0.060 0.556 sum 20.196 -5.421 -4.670 21.426 Atomic orbital electron populations 1.70107 1.08869 1.28338 1.52437 1.26202 0.95677 1.04229 0.93856 0.85521 0.79737 0.77007 0.79492 1.18565 1.21981 1.15419 1.21488 0.92679 0.92730 1.51007 0.96275 1.19451 0.93459 0.93219 0.98232 1.21624 0.92864 0.98986 1.01462 1.22796 0.95067 0.72631 1.08680 1.49250 1.32000 1.10314 1.17451 1.23489 0.92134 0.90859 0.96338 1.20544 1.06729 0.94760 0.97921 1.98398 1.64409 1.57416 1.75771 1.22641 1.05605 0.87710 0.97781 1.42344 0.99164 1.00697 0.99908 1.94641 1.38428 1.90247 1.15304 1.94553 1.41400 1.26904 1.69551 1.77511 1.19451 0.95741 1.14512 0.92542 0.94897 0.93771 0.93871 0.92786 0.81659 0.86565 0.71947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.15 13.96 21.45 0.30 -58.85 15 2 C 0.00 -0.19 5.47 84.65 0.46 0.27 15 3 Si 0.96 40.38 27.47 68.60 1.88 42.26 15 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.23 -8.40 6.54 99.48 0.65 -7.75 15 7 C -0.54 -29.59 9.66 25.60 0.25 -29.34 15 8 H 0.02 1.19 7.99 -2.91 -0.02 1.17 15 9 C -0.01 -0.22 4.04 29.85 0.12 -0.10 15 10 C -0.11 -3.55 5.34 30.60 0.16 -3.39 15 11 C 0.13 2.33 6.51 86.38 0.56 2.90 15 12 N -0.30 -6.40 3.68 -347.94 -1.28 -7.68 15 13 C 0.12 1.72 11.43 83.54 0.95 2.68 15 14 C -0.16 -3.32 6.63 22.02 0.15 -3.17 15 15 Cl 0.01 0.21 27.87 -2.72 -0.08 0.13 15 16 C 0.11 3.03 8.15 130.34 1.06 4.09 15 17 N 0.06 1.75 4.45 -49.40 -0.22 1.53 15 18 O -0.18 -6.35 19.23 18.89 0.36 -5.99 15 19 O -0.10 -2.85 17.75 18.89 0.34 -2.52 15 20 N -0.24 -7.22 12.38 -49.41 -0.61 -7.83 15 21 H 0.27 15.30 8.31 -92.70 -0.77 14.53 15 22 H 0.03 1.22 7.20 -2.39 -0.02 1.20 15 23 H 0.04 1.50 7.57 -2.39 -0.02 1.48 15 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 15 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 26 H 0.17 1.46 8.07 -2.39 -0.02 1.44 15 27 H 0.12 1.92 8.14 -2.38 -0.02 1.90 15 28 H 0.26 0.55 8.06 -2.91 -0.02 0.53 15 Total: -1.00 -74.12 276.41 5.55 -68.58 By element: Atomic # 1 Polarization: -4.70 SS G_CDS: 1.13 Total: -3.57 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 3.72 Total: -26.06 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.81 Total: -72.83 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.70 Total: -8.51 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.88 Total: 42.26 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -0.08 Total: 0.13 kcal Total: -74.12 5.55 -68.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069760103.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.388 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds