Wall clock time and date at job start Mon Mar 30 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31065 * 1 3 3 Si 1.86801 * 120.00126 * 2 1 4 4 H 1.48508 * 109.46959 * 269.99655 * 3 2 1 5 5 H 1.48498 * 109.47327 * 29.99585 * 3 2 1 6 6 H 1.48498 * 109.47385 * 150.00073 * 3 2 1 7 7 C 1.39636 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.41332 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.46341 * 127.00441 * 359.97143 * 9 7 2 11 11 C 1.36531 * 106.49673 * 180.02562 * 10 9 7 12 12 S 1.76350 * 140.59001 * 180.02562 * 11 10 9 13 13 C 1.75634 * 90.97951 * 180.02562 * 12 11 10 14 14 C 1.32530 * 109.98411 * 0.23085 * 13 12 11 15 15 C 1.47216 * 122.02505 * 179.70479 * 14 13 12 16 16 C 1.36236 * 125.95491 * 4.58611 * 15 14 13 17 17 C 1.40968 * 106.72112 * 179.88688 * 16 15 14 18 18 C 1.34686 * 107.07026 * 0.37756 * 17 16 15 19 19 O 1.34479 * 108.71640 * 359.76501 * 18 17 16 20 20 N 1.36112 * 109.74315 * 359.97438 * 11 10 9 21 21 C 1.37645 * 109.41473 * 359.97438 * 20 11 10 22 22 H 0.97001 * 120.00035 * 0.02562 * 1 2 3 23 23 H 1.08002 * 126.75405 * 0.02562 * 10 9 7 24 24 H 1.08001 * 125.01136 * 179.97438 * 13 12 11 25 25 H 1.07994 * 126.64013 * 0.02562 * 16 15 14 26 26 H 1.07998 * 126.46083 * 180.17832 * 17 16 15 27 27 H 1.08004 * 125.63866 * 179.72893 * 18 17 16 28 28 H 1.07996 * 125.81917 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 2.4923 2.0463 -1.4002 5 1 1.4422 2.6527 0.6999 6 1 3.5422 1.4402 0.7000 7 6 2.0088 -1.2093 0.0005 8 1 3.0889 -1.2093 0.0001 9 6 1.3022 -2.4333 0.0005 10 6 -0.1503 -2.6117 0.0006 11 6 -0.3755 -3.9583 0.0012 12 16 -1.7044 -5.1176 0.0011 13 6 -0.5727 -6.4607 0.0031 14 6 0.6716 -6.0045 0.0087 15 6 1.8342 -6.9076 0.0179 16 6 1.7920 -8.2667 -0.0663 17 6 3.1269 -8.7174 -0.0230 18 6 3.9088 -7.6268 0.0927 19 8 3.1249 -6.5344 0.1171 20 7 0.8123 -4.6231 0.0009 21 6 1.8456 -3.7137 -0.0005 22 1 -0.4850 0.8400 -0.0004 23 1 -0.8973 -1.8317 0.0003 24 1 -0.8499 -7.5045 0.0041 25 1 0.9072 -8.8799 -0.1522 26 1 3.4597 -9.7437 -0.0700 27 1 4.9870 -7.6294 0.1559 28 1 2.8985 -3.9536 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075396242.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:24 Heat of formation + Delta-G solvation = 72.611768 kcal Electronic energy + Delta-G solvation = -16039.839910 eV Core-core repulsion = 13342.450604 eV Total energy + Delta-G solvation = -2697.389307 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.56333 -41.86671 -36.82496 -34.98989 -33.88636 -31.21528 -29.92200 -29.46649 -26.84873 -24.51273 -22.61593 -21.87605 -21.58980 -20.39778 -19.18723 -18.41856 -17.80214 -17.19718 -16.68328 -16.15180 -15.86200 -15.22693 -14.86534 -14.54023 -13.87147 -13.77210 -13.57859 -13.45038 -13.08231 -13.01276 -12.77830 -12.17374 -12.15885 -11.89858 -11.64076 -11.17761 -10.97411 -10.72232 -9.50584 -9.18480 -8.46911 -7.79188 -6.22545 -0.20451 0.54271 0.89419 0.91593 1.38947 1.41286 1.54752 1.55896 1.99881 2.07730 2.14565 2.23192 2.28782 3.47496 3.59115 4.02651 4.12152 4.18517 4.52715 4.66398 4.74823 4.92847 5.02945 5.14291 5.15274 5.31846 5.54196 5.64711 5.99595 6.05689 6.15718 6.58280 6.75532 7.02850 7.06264 8.49910 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.025042 B = 0.006255 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.835592 B = 4475.087478 C = 5581.895449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.027 3.973 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.474 4.474 8 H 0.073 0.927 9 C 0.046 3.954 10 C -0.182 4.182 11 C -0.083 4.083 12 S 0.115 5.885 13 C -0.236 4.236 14 C 0.140 3.860 15 C -0.003 4.003 16 C -0.163 4.163 17 C -0.211 4.211 18 C -0.036 4.036 19 O -0.200 6.200 20 N -0.397 5.397 21 C -0.192 4.192 22 H 0.283 0.717 23 H 0.153 0.847 24 H 0.224 0.776 25 H 0.184 0.816 26 H 0.191 0.809 27 H 0.240 0.760 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.019 -14.137 -0.029 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.506 4.506 8 H 0.091 0.909 9 C 0.039 3.961 10 C -0.219 4.219 11 C -0.301 4.301 12 S 0.374 5.626 13 C -0.374 4.374 14 C 0.028 3.972 15 C -0.054 4.054 16 C -0.183 4.183 17 C -0.229 4.229 18 C -0.104 4.104 19 O -0.097 6.097 20 N -0.072 5.072 21 C -0.316 4.316 22 H 0.094 0.906 23 H 0.170 0.830 24 H 0.241 0.759 25 H 0.201 0.799 26 H 0.208 0.792 27 H 0.256 0.744 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.538 -13.837 -0.004 13.847 hybrid contribution 1.875 0.761 -0.007 2.024 sum 2.413 -13.075 -0.011 13.296 Atomic orbital electron populations 1.69828 1.08637 1.29624 1.39088 1.26738 0.95789 1.04324 0.91612 0.85021 0.78608 0.75579 0.79264 1.18849 1.19153 1.18483 1.19074 0.94131 0.90048 1.47370 0.90869 1.18725 0.91447 0.91540 0.94384 1.22384 0.96912 0.90346 1.12269 1.23850 0.89622 0.97419 1.19160 1.83586 1.03536 0.91374 1.84121 1.24818 0.91684 1.05123 1.15816 1.17108 0.92791 0.80290 1.06965 1.19942 0.81010 0.93097 1.11389 1.22214 1.00625 0.90811 1.04664 1.22175 0.91542 1.01449 1.07735 1.25157 0.98546 0.82889 1.03770 1.84226 1.16676 1.37483 1.71335 1.41983 1.06672 1.02724 1.55776 1.21846 0.90319 0.86502 1.32941 0.90631 0.83012 0.75920 0.79907 0.79186 0.74384 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.31 10.40 21.78 0.23 -46.09 15 2 C 0.03 1.43 5.49 85.14 0.47 1.90 15 3 Si 0.99 40.50 29.56 68.60 2.03 42.52 15 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 7 C -0.47 -27.53 9.40 23.37 0.22 -27.31 15 8 H 0.07 4.07 7.84 -2.91 -0.02 4.05 15 9 C 0.05 2.75 6.07 -20.20 -0.12 2.63 15 10 C -0.18 -10.46 9.94 23.98 0.24 -10.23 15 11 C -0.08 -4.25 7.69 83.63 0.64 -3.60 15 12 S 0.12 4.31 23.35 -56.49 -1.32 2.99 15 13 C -0.24 -7.77 10.53 66.68 0.70 -7.07 15 14 C 0.14 5.66 6.70 39.25 0.26 5.92 15 15 C 0.00 -0.09 7.12 24.16 0.17 0.08 15 16 C -0.16 -4.03 10.35 22.47 0.23 -3.80 15 17 C -0.21 -4.27 10.88 22.12 0.24 -4.03 15 18 C -0.04 -0.85 12.08 67.00 0.81 -0.04 15 19 O -0.20 -7.18 9.81 -8.40 -0.08 -7.26 15 20 N -0.40 -19.98 3.11 -336.61 -1.05 -21.03 15 21 C -0.19 -10.63 11.47 83.99 0.96 -9.67 15 22 H 0.28 14.03 8.30 -92.71 -0.77 13.26 15 23 H 0.15 8.96 6.00 -2.91 -0.02 8.94 15 24 H 0.22 4.87 7.45 -2.91 -0.02 4.84 15 25 H 0.18 3.19 7.57 -2.91 -0.02 3.17 15 26 H 0.19 2.27 8.06 -2.91 -0.02 2.25 15 27 H 0.24 3.39 8.06 -2.91 -0.02 3.36 15 28 H 0.14 7.50 7.61 -2.91 -0.02 7.48 15 Total: -1.00 -71.39 266.16 5.83 -65.56 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.20 Total: 18.52 kcal Atomic # 6 Polarization: -60.05 SS G_CDS: 4.83 Total: -55.22 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.82 Total: -67.12 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.08 Total: -7.26 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.32 Total: 2.99 kcal Total: -71.39 5.83 -65.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075396242.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.173 kcal (2) G-P(sol) polarization free energy of solvation -71.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds