Wall clock time and date at job start Mon Mar 30 2020 07:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70996 * 125.55515 * 2 1 4 4 C 1.75916 * 90.77430 * 179.97438 * 3 2 1 5 5 C 1.47760 * 125.06246 * 180.02562 * 4 3 2 6 6 C 1.39624 * 120.14860 * 179.70658 * 5 4 3 7 7 C 1.37950 * 119.84605 * 179.76648 * 6 5 4 8 8 C 1.38368 * 120.14789 * 0.48531 * 7 6 5 9 9 C 1.50704 * 119.84341 * 179.74179 * 8 7 6 10 10 C 1.38365 * 120.30501 * 359.76527 * 8 7 6 11 11 C 1.37946 * 120.14756 * 0.02562 * 10 8 7 12 12 N 1.29833 * 109.87106 * 0.02562 * 4 3 2 13 13 C 1.32769 * 116.01272 * 359.75066 * 12 4 3 14 14 C 1.41146 * 122.77575 * 180.26223 * 13 12 4 15 15 H 1.08001 * 120.00278 * 180.19942 * 14 13 12 16 16 C 1.39661 * 120.00367 * 0.19778 * 14 13 12 17 17 N 1.31046 * 119.99664 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00112 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46722 * 60.00289 * 18 16 14 20 20 H 1.48506 * 109.46674 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47014 * 300.00091 * 18 16 14 22 22 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 240.02475 * 1 2 3 24 24 H 1.09004 * 109.47113 * 120.02456 * 1 2 3 25 25 H 1.08000 * 120.07460 * 359.97438 * 6 5 4 26 26 H 1.08001 * 119.92084 * 180.20853 * 7 6 5 27 27 H 1.08998 * 109.47110 * 270.02171 * 9 8 7 28 28 H 1.08994 * 109.47568 * 30.02677 * 9 8 7 29 29 H 1.09010 * 109.46629 * 150.02266 * 9 8 7 30 30 H 1.07997 * 119.92811 * 179.97438 * 10 8 7 31 31 H 1.08005 * 120.07484 * 179.97438 * 11 10 8 32 32 H 0.97001 * 119.99751 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5013 1.3911 0.0000 4 6 3.9462 0.3877 0.0008 5 6 5.3333 0.8968 0.0017 6 6 6.4077 0.0051 0.0085 7 6 7.7001 0.4872 0.0044 8 6 7.9330 1.8512 0.0038 9 6 9.3478 2.3704 0.0052 10 6 6.8730 2.7405 0.0024 11 6 5.5756 2.2719 0.0020 12 7 3.6122 -0.8670 0.0004 13 6 2.3093 -1.1226 0.0048 14 6 1.7881 -2.4343 0.0105 15 1 0.7195 -2.5908 0.0106 16 6 2.6541 -3.5300 0.0159 17 7 3.9508 -3.3402 0.0162 18 14 1.9642 -5.2659 0.0242 19 1 1.1311 -5.4731 -1.1875 20 1 3.0826 -6.2429 0.0297 21 1 1.1307 -5.4615 1.2374 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5135 0.8902 24 1 -0.3633 -0.5142 -0.8898 25 1 6.2272 -1.0597 0.0134 26 1 8.5321 -0.2015 0.0062 27 1 9.6877 2.4959 1.0332 28 1 9.9961 1.6601 -0.5077 29 1 9.3828 3.3310 -0.5089 30 1 7.0618 3.8038 0.0023 31 1 4.7491 2.9671 0.0013 32 1 4.5523 -4.1011 0.0203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076064541.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:10 Heat of formation + Delta-G solvation = 45.130975 kcal Electronic energy + Delta-G solvation = -16100.914861 eV Core-core repulsion = 13538.166992 eV Total energy + Delta-G solvation = -2562.747869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.95992 -37.69947 -33.55606 -32.61949 -30.89108 -30.53945 -27.84564 -26.65200 -23.77092 -22.66126 -22.06304 -20.55647 -18.85808 -16.90641 -16.04090 -15.36614 -14.97405 -14.60281 -14.46590 -13.68193 -13.40566 -13.23151 -13.02226 -12.69018 -12.13167 -12.06535 -11.86484 -11.54814 -11.42641 -11.41517 -11.13055 -10.81134 -10.64730 -10.60390 -10.38139 -9.51303 -9.38178 -8.54968 -8.51241 -8.06274 -7.80375 -6.99250 -6.55292 -4.35509 1.27209 1.83098 2.54186 2.81757 3.07817 3.08562 3.10988 3.54307 3.98571 4.07635 4.49129 5.04098 5.10986 5.22029 5.41316 5.49433 5.58753 5.67090 5.83096 5.90399 6.10475 6.32381 6.34459 6.41772 6.54259 6.65048 6.66772 6.91045 6.97982 7.05941 7.12504 7.23883 7.39610 7.56141 8.17402 8.53114 8.87023 9.57322 10.32172 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.006564 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.338501 B = 4264.917199 C = 5525.803382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.420 4.420 3 S -0.011 6.011 4 C 0.071 3.929 5 C 0.002 3.998 6 C -0.075 4.075 7 C -0.125 4.125 8 C -0.098 4.098 9 C -0.109 4.109 10 C -0.124 4.124 11 C -0.107 4.107 12 N -0.384 5.384 13 C 0.225 3.775 14 C -0.425 4.425 15 H 0.085 0.915 16 C 0.071 3.929 17 N -0.751 5.751 18 Si 0.911 3.089 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 H 0.035 0.965 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.143 0.857 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.351 6.804 0.021 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.541 4.541 3 S 0.241 5.759 4 C -0.207 4.207 5 C -0.002 4.002 6 C -0.096 4.096 7 C -0.143 4.143 8 C -0.099 4.099 9 C -0.166 4.166 10 C -0.142 4.142 11 C -0.128 4.128 12 N -0.098 5.098 13 C 0.101 3.899 14 C -0.460 4.460 15 H 0.103 0.897 16 C -0.151 4.151 17 N -0.375 5.375 18 Si 0.736 3.264 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.190 1.190 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.161 0.839 26 H 0.138 0.862 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.716 7.294 0.018 9.915 hybrid contribution -0.745 -1.725 0.012 1.879 sum 5.971 5.569 0.029 8.165 Atomic orbital electron populations 1.19443 0.89690 0.98708 1.00093 1.24215 0.99234 0.93501 1.37106 1.82426 1.01875 1.14510 1.77085 1.25709 0.95023 0.91741 1.08212 1.18077 0.89538 0.92621 0.99921 1.21488 0.90878 1.01160 0.96087 1.20953 0.96713 0.94542 1.02069 1.19908 0.95336 0.93642 1.00978 1.20743 0.92989 1.01010 1.01874 1.20759 0.91893 0.98950 1.02613 1.21157 0.96930 0.94228 1.00447 1.67423 1.17901 1.13384 1.11123 1.17721 0.84299 0.93865 0.94050 1.18916 0.94290 0.88002 1.44757 0.89689 1.25977 0.94700 1.01325 0.93085 1.70097 1.02733 1.32344 1.32282 0.86325 0.79291 0.81001 0.79814 1.19011 1.20322 1.19018 0.94567 0.93588 0.93596 0.83948 0.86245 0.91576 0.91845 0.91929 0.86313 0.86037 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.43 9.56 36.01 0.34 -0.08 16 2 C -0.42 -10.56 6.48 -34.40 -0.22 -10.78 16 3 S -0.01 -0.24 22.04 -107.50 -2.37 -2.61 16 4 C 0.07 1.72 7.30 -14.51 -0.11 1.61 16 5 C 0.00 0.05 5.87 -104.97 -0.62 -0.57 16 6 C -0.07 -1.46 9.68 -39.17 -0.38 -1.84 16 7 C -0.12 -1.96 9.68 -39.64 -0.38 -2.35 16 8 C -0.10 -1.38 5.89 -104.53 -0.62 -1.99 16 9 C -0.11 -1.13 10.00 36.01 0.36 -0.77 16 10 C -0.12 -1.81 9.68 -39.64 -0.38 -2.19 16 11 C -0.11 -1.85 9.60 -39.17 -0.38 -2.23 16 12 N -0.38 -10.51 7.98 -9.17 -0.07 -10.58 16 13 C 0.23 6.26 6.45 -86.45 -0.56 5.70 16 14 C -0.43 -11.61 8.97 -37.95 -0.34 -11.95 16 15 H 0.09 2.20 7.35 -52.49 -0.39 1.81 16 16 C 0.07 1.85 5.49 -17.36 -0.10 1.75 16 17 N -0.75 -20.04 11.69 55.53 0.65 -19.39 16 18 Si 0.91 19.06 29.56 -169.99 -5.02 14.04 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.14 3.06 7.80 -52.49 -0.41 2.66 16 26 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.06 0.56 8.08 -51.92 -0.42 0.14 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.97 7.27 -52.48 -0.38 1.59 16 32 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 LS Contribution 292.81 15.07 4.41 4.41 Total: -1.00 -29.44 292.81 -9.46 -38.90 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -3.69 Total: 0.92 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -3.37 Total: -25.70 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.58 Total: -29.97 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.37 Total: -2.61 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.44 -9.46 -38.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076064541.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.035 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds