Wall clock time and date at job start Mon Mar 30 2020 07:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70996 * 125.55515 * 2 1 4 4 C 1.75916 * 90.77430 * 179.97438 * 3 2 1 5 5 C 1.47760 * 125.06246 * 180.02562 * 4 3 2 6 6 C 1.39624 * 120.14860 * 179.70658 * 5 4 3 7 7 C 1.37950 * 119.84605 * 179.76648 * 6 5 4 8 8 C 1.38368 * 120.14789 * 0.48531 * 7 6 5 9 9 C 1.50704 * 119.84341 * 179.74179 * 8 7 6 10 10 C 1.38365 * 120.30501 * 359.76527 * 8 7 6 11 11 C 1.37946 * 120.14756 * 0.02562 * 10 8 7 12 12 N 1.29833 * 109.87106 * 0.02562 * 4 3 2 13 13 C 1.32769 * 116.01272 * 359.75066 * 12 4 3 14 14 C 1.41146 * 122.77575 * 180.26223 * 13 12 4 15 15 H 1.08001 * 120.00278 * 180.19942 * 14 13 12 16 16 C 1.39661 * 120.00367 * 0.19778 * 14 13 12 17 17 N 1.31046 * 119.99664 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00112 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46722 * 60.00289 * 18 16 14 20 20 H 1.48506 * 109.46674 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47014 * 300.00091 * 18 16 14 22 22 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 240.02475 * 1 2 3 24 24 H 1.09004 * 109.47113 * 120.02456 * 1 2 3 25 25 H 1.08000 * 120.07460 * 359.97438 * 6 5 4 26 26 H 1.08001 * 119.92084 * 180.20853 * 7 6 5 27 27 H 1.08998 * 109.47110 * 270.02171 * 9 8 7 28 28 H 1.08994 * 109.47568 * 30.02677 * 9 8 7 29 29 H 1.09010 * 109.46629 * 150.02266 * 9 8 7 30 30 H 1.07997 * 119.92811 * 179.97438 * 10 8 7 31 31 H 1.08005 * 120.07484 * 179.97438 * 11 10 8 32 32 H 0.97001 * 119.99751 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5013 1.3911 0.0000 4 6 3.9462 0.3877 0.0008 5 6 5.3333 0.8968 0.0017 6 6 6.4077 0.0051 0.0085 7 6 7.7001 0.4872 0.0044 8 6 7.9330 1.8512 0.0038 9 6 9.3478 2.3704 0.0052 10 6 6.8730 2.7405 0.0024 11 6 5.5756 2.2719 0.0020 12 7 3.6122 -0.8670 0.0004 13 6 2.3093 -1.1226 0.0048 14 6 1.7881 -2.4343 0.0105 15 1 0.7195 -2.5908 0.0106 16 6 2.6541 -3.5300 0.0159 17 7 3.9508 -3.3402 0.0162 18 14 1.9642 -5.2659 0.0242 19 1 1.1311 -5.4731 -1.1875 20 1 3.0826 -6.2429 0.0297 21 1 1.1307 -5.4615 1.2374 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3633 -0.5135 0.8902 24 1 -0.3633 -0.5142 -0.8898 25 1 6.2272 -1.0597 0.0134 26 1 8.5321 -0.2015 0.0062 27 1 9.6877 2.4959 1.0332 28 1 9.9961 1.6601 -0.5077 29 1 9.3828 3.3310 -0.5089 30 1 7.0618 3.8038 0.0023 31 1 4.7491 2.9671 0.0013 32 1 4.5523 -4.1011 0.0203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076064541.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:10 Heat of formation + Delta-G solvation = 29.570614 kcal Electronic energy + Delta-G solvation = -16101.589609 eV Core-core repulsion = 13538.166992 eV Total energy + Delta-G solvation = -2563.422617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39395 -39.45516 -35.30747 -34.17002 -32.52953 -31.86221 -29.50412 -28.14314 -25.52735 -24.22165 -23.45395 -22.07391 -20.61227 -18.75088 -17.67680 -17.16525 -16.54637 -16.02043 -15.79182 -15.24362 -15.04829 -14.49377 -14.31142 -14.24551 -13.62030 -13.60722 -13.37524 -13.12573 -13.00529 -12.90477 -12.63956 -12.44798 -12.22974 -12.17025 -11.83729 -11.35829 -11.21236 -10.05692 -9.92847 -9.86026 -9.63978 -8.73942 -8.44539 -6.35243 -0.27128 0.51826 0.89096 0.99982 1.35739 1.43383 1.48439 1.65802 2.22291 2.36124 2.94671 3.51291 3.52501 4.00100 4.07990 4.17200 4.48007 4.57170 4.63604 4.70605 4.85119 4.93011 4.94107 4.95560 4.98129 5.19132 5.27059 5.33237 5.35107 5.50546 5.66028 5.69443 5.71519 6.10808 6.18175 6.57775 6.89254 7.68861 8.44521 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.006564 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.338501 B = 4264.917199 C = 5525.803382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 C -0.448 4.448 3 S 0.040 5.960 4 C 0.065 3.935 5 C -0.041 4.041 6 C -0.094 4.094 7 C -0.125 4.125 8 C -0.080 4.080 9 C -0.108 4.108 10 C -0.117 4.117 11 C -0.106 4.106 12 N -0.431 5.431 13 C 0.189 3.811 14 C -0.464 4.464 15 H 0.087 0.913 16 C 0.025 3.975 17 N -0.787 5.787 18 Si 0.989 3.011 19 H -0.260 1.260 20 H -0.269 1.269 21 H -0.260 1.260 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.107 0.893 26 H 0.143 0.857 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.129 0.871 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 8.541 0.024 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.569 4.569 3 S 0.293 5.707 4 C -0.213 4.213 5 C -0.045 4.045 6 C -0.115 4.115 7 C -0.143 4.143 8 C -0.082 4.082 9 C -0.165 4.165 10 C -0.134 4.134 11 C -0.126 4.126 12 N -0.146 5.146 13 C 0.064 3.936 14 C -0.498 4.498 15 H 0.105 0.895 16 C -0.193 4.193 17 N -0.411 5.411 18 Si 0.809 3.191 19 H -0.184 1.184 20 H -0.193 1.193 21 H -0.184 1.184 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.125 0.875 26 H 0.161 0.839 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.178 0.822 31 H 0.147 0.853 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.237 9.062 0.021 12.246 hybrid contribution -1.056 -2.042 0.012 2.299 sum 7.182 7.019 0.032 10.043 Atomic orbital electron populations 1.19475 0.87558 1.00260 1.00231 1.24855 1.01286 0.94350 1.36391 1.81939 1.00084 1.12443 1.76214 1.26474 0.97280 0.91548 1.06011 1.18238 0.88018 0.94435 1.03833 1.21332 0.92675 0.99471 0.98052 1.21209 0.95539 0.96254 1.01337 1.20438 0.97683 0.92619 0.97411 1.20852 0.89978 1.02212 1.03436 1.21230 0.90504 1.01151 1.00562 1.21315 0.98789 0.92574 0.99947 1.67417 1.18055 1.15212 1.13878 1.18218 0.85246 0.95107 0.94998 1.19238 0.94743 0.89021 1.46830 0.89524 1.26909 0.94818 1.05490 0.92123 1.70224 1.04039 1.33701 1.33110 0.85167 0.78678 0.75284 0.79972 1.18381 1.19298 1.18392 0.92181 0.93422 0.93423 0.87531 0.83945 0.89877 0.90649 0.89759 0.82206 0.85274 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.69 9.56 71.24 0.68 0.00 16 2 C -0.45 -23.15 6.48 25.63 0.17 -22.99 16 3 S 0.04 1.83 22.04 -56.49 -1.25 0.58 16 4 C 0.06 3.25 7.30 87.51 0.64 3.88 16 5 C -0.04 -1.74 5.87 -20.09 -0.12 -1.86 16 6 C -0.09 -3.78 9.68 22.54 0.22 -3.57 16 7 C -0.13 -3.79 9.68 22.23 0.22 -3.58 16 8 C -0.08 -1.98 5.89 -19.80 -0.12 -2.10 16 9 C -0.11 -1.67 10.00 71.24 0.71 -0.96 16 10 C -0.12 -2.97 9.68 22.23 0.22 -2.76 16 11 C -0.11 -3.51 9.60 22.54 0.22 -3.29 16 12 N -0.43 -24.95 7.98 -182.94 -1.46 -26.41 16 13 C 0.19 11.02 6.45 39.66 0.26 11.28 16 14 C -0.46 -26.57 8.97 23.33 0.21 -26.36 16 15 H 0.09 4.68 7.35 -2.91 -0.02 4.66 16 16 C 0.03 1.35 5.49 85.15 0.47 1.82 16 17 N -0.79 -44.25 11.69 21.78 0.25 -44.00 16 18 Si 0.99 40.28 29.56 68.60 2.03 42.31 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 22 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.11 5.01 7.80 -2.91 -0.02 4.98 16 26 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 29 H 0.08 1.01 8.08 -2.38 -0.02 0.99 16 30 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.13 3.97 7.27 -2.91 -0.02 3.95 16 32 H 0.28 14.24 8.30 -92.71 -0.77 13.47 16 Total: -1.00 -68.51 292.81 4.46 -64.05 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.12 Total: 13.95 kcal Atomic # 6 Polarization: -54.24 SS G_CDS: 3.76 Total: -50.48 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.21 Total: -70.41 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.25 Total: 0.58 kcal Total: -68.51 4.46 -64.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076064541.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.617 kcal (2) G-P(sol) polarization free energy of solvation -68.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds