Wall clock time and date at job start Mon Mar 30 2020 07:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38390 * 119.85105 * 2 1 4 4 C 1.37926 * 120.14999 * 179.97438 * 3 2 1 5 5 C 1.39639 * 119.84679 * 359.97438 * 4 3 2 6 6 C 1.47768 * 120.14434 * 179.97438 * 5 4 3 7 7 N 1.29846 * 125.06285 * 128.72021 * 6 5 4 8 8 C 1.32763 * 116.00813 * 180.21769 * 7 6 5 9 9 C 1.41150 * 122.77508 * 179.82996 * 8 7 6 10 10 H 1.07997 * 120.00367 * 189.88907 * 9 8 7 11 11 C 1.39654 * 119.99715 * 9.89005 * 9 8 7 12 12 N 1.31048 * 120.00055 * 204.44831 * 11 9 8 13 13 Si 1.86802 * 120.00256 * 24.45357 * 11 9 8 14 14 H 1.48503 * 109.46792 * 269.99869 * 13 11 9 15 15 H 1.48498 * 109.47308 * 29.99613 * 13 11 9 16 16 H 1.48503 * 109.47070 * 149.99931 * 13 11 9 17 17 C 1.37993 * 114.45068 * 359.56478 * 8 7 6 18 18 S 1.70991 * 108.89132 * 0.22856 * 17 8 7 19 19 C 1.39601 * 119.70621 * 0.25157 * 5 4 3 20 20 C 1.50702 * 120.07520 * 179.72616 * 19 5 4 21 21 C 1.37969 * 119.84554 * 359.49411 * 19 5 4 22 22 H 1.09004 * 109.46990 * 90.00305 * 1 2 3 23 23 H 1.09002 * 109.47350 * 210.00006 * 1 2 3 24 24 H 1.09000 * 109.47475 * 330.00614 * 1 2 3 25 25 H 1.08003 * 119.92482 * 359.97438 * 3 2 1 26 26 H 1.07995 * 120.07622 * 180.02562 * 4 3 2 27 27 H 0.97003 * 119.99833 * 354.90505 * 12 11 9 28 28 H 1.07994 * 125.55257 * 180.22974 * 17 8 7 29 29 H 1.08997 * 109.47249 * 87.43583 * 20 19 5 30 30 H 1.09005 * 109.46777 * 207.43567 * 20 19 5 31 31 H 1.08998 * 109.47247 * 327.43046 * 20 19 5 32 32 H 1.08005 * 119.92425 * 180.25212 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5751 1.2075 0.0005 5 6 4.2763 0.0000 0.0016 6 6 5.7540 0.0000 0.0016 7 7 6.5000 -0.6641 0.8314 8 6 7.8110 -0.5299 0.6711 9 6 8.7524 -1.1838 1.4949 10 1 9.7985 -0.9230 1.4319 11 6 8.3310 -2.1681 2.3915 12 7 9.0470 -2.4345 3.4563 13 14 6.7467 -3.1052 2.0731 14 1 5.6120 -2.3899 2.7105 15 1 6.5129 -3.1995 0.6097 16 1 6.8556 -4.4708 2.6462 17 6 8.1774 0.2970 -0.3710 18 16 6.7647 0.8952 -1.1261 19 6 3.5752 -1.2072 -0.0032 20 6 4.3237 -2.5152 -0.0083 21 6 2.1956 -1.2000 0.0016 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6522 2.1335 -0.0004 26 1 4.1114 2.1448 0.0010 27 1 9.9057 -2.0016 3.5841 28 1 9.1912 0.5287 -0.6622 29 1 4.5440 -2.8118 1.0172 30 1 3.7124 -3.2817 -0.4849 31 1 5.2558 -2.3983 -0.5610 32 1 1.6519 -2.1332 0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076064553.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:07 Heat of formation + Delta-G solvation = 23.185577 kcal Electronic energy + Delta-G solvation = -16545.641670 eV Core-core repulsion = 13981.942177 eV Total energy + Delta-G solvation = -2563.699493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81792 -39.70100 -35.65969 -34.55267 -33.21608 -31.25073 -28.28277 -28.05154 -27.82331 -24.24235 -23.00805 -21.70098 -20.88753 -20.00976 -18.26043 -17.16578 -16.70676 -16.27236 -15.64236 -15.30304 -15.27347 -14.77965 -14.54934 -14.26562 -14.04871 -13.91076 -13.66648 -13.37346 -12.99112 -12.82718 -12.41375 -12.35786 -12.25494 -12.03139 -11.85353 -11.37259 -11.00792 -10.34081 -10.23388 -9.80112 -9.67361 -9.45771 -9.12047 -6.66184 -0.27975 0.37837 0.46138 0.93604 1.39139 1.42499 1.45019 1.80554 2.06343 2.31522 2.76968 3.09221 3.36902 3.87224 3.95772 4.03351 4.38099 4.46594 4.53980 4.65773 4.68226 4.80385 4.86940 4.90741 4.96660 5.02855 5.15326 5.25950 5.34949 5.38998 5.47584 5.64788 5.67440 5.93829 6.06610 6.11701 6.62963 7.16801 7.91083 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022996 B = 0.008011 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.307852 B = 3494.238938 C = 4363.435210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.070 4.070 3 C -0.123 4.123 4 C -0.094 4.094 5 C -0.058 4.058 6 C 0.108 3.892 7 N -0.500 5.500 8 C 0.199 3.801 9 C -0.527 4.527 10 H 0.057 0.943 11 C 0.023 3.977 12 N -0.835 5.835 13 Si 1.133 2.867 14 H -0.276 1.276 15 H -0.257 1.257 16 H -0.300 1.300 17 C -0.472 4.472 18 S 0.105 5.895 19 C -0.060 4.060 20 C -0.124 4.124 21 C -0.124 4.124 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.158 0.842 26 H 0.131 0.869 27 H 0.278 0.722 28 H 0.141 0.859 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.719 3.756 -8.069 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.115 4.115 5 C -0.061 4.061 6 C -0.168 4.168 7 N -0.219 5.219 8 C 0.075 3.925 9 C -0.561 4.561 10 H 0.075 0.925 11 C -0.192 4.192 12 N -0.459 5.459 13 Si 0.958 3.042 14 H -0.203 1.203 15 H -0.182 1.182 16 H -0.230 1.230 17 C -0.611 4.611 18 S 0.358 5.642 19 C -0.063 4.063 20 C -0.181 4.181 21 C -0.142 4.142 22 H 0.104 0.896 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.175 0.825 26 H 0.149 0.851 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.887 3.004 -7.821 21.580 hybrid contribution 3.415 0.912 0.328 3.550 sum -16.472 3.916 -7.493 18.515 Atomic orbital electron populations 1.20873 0.88161 1.04062 1.03604 1.20454 0.98058 0.92269 0.96313 1.21234 0.92467 0.99318 1.01076 1.21367 0.95445 0.95997 0.98657 1.18066 0.86252 0.95349 1.06482 1.26066 0.97630 0.97831 0.95314 1.66496 1.04826 1.24197 1.26378 1.17961 0.87715 0.94309 0.92488 1.19859 0.94342 1.20766 1.21160 0.92520 1.28319 1.06861 0.94840 0.89227 1.70759 1.12393 1.40992 1.21783 0.83037 0.70531 0.72595 0.78055 1.20255 1.18234 1.22960 1.25579 1.02135 1.22540 1.10840 1.82223 0.96917 1.49913 1.35099 1.20122 0.94777 0.93714 0.97708 1.21238 0.99929 0.95024 1.01879 1.21128 0.91598 0.99660 1.01824 0.89551 0.90486 0.90090 0.82460 0.85083 0.91098 0.84092 0.92332 0.88298 0.93366 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.62 16 2 C -0.07 -1.43 5.89 -19.80 -0.12 -1.54 16 3 C -0.12 -2.67 9.68 22.23 0.22 -2.46 16 4 C -0.09 -2.72 9.78 22.53 0.22 -2.50 16 5 C -0.06 -2.08 5.84 -20.09 -0.12 -2.20 16 6 C 0.11 4.76 5.79 87.51 0.51 5.26 16 7 N -0.50 -25.80 5.69 -182.93 -1.04 -26.84 16 8 C 0.20 11.11 6.05 39.66 0.24 11.35 16 9 C -0.53 -31.73 9.53 23.33 0.22 -31.51 16 10 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 11 C 0.02 1.37 5.48 85.15 0.47 1.84 16 12 N -0.84 -49.29 13.67 21.78 0.30 -49.00 16 13 Si 1.13 56.09 22.67 68.60 1.56 57.65 16 14 H -0.28 -13.58 6.85 99.48 0.68 -12.90 16 15 H -0.26 -12.06 4.95 99.48 0.49 -11.57 16 16 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 17 C -0.47 -23.89 10.99 67.76 0.74 -23.14 16 18 S 0.11 4.30 23.14 -56.49 -1.31 2.99 16 19 C -0.06 -1.97 5.91 -19.60 -0.12 -2.08 16 20 C -0.12 -4.29 7.65 71.24 0.54 -3.75 16 21 C -0.12 -3.02 9.33 22.23 0.21 -2.81 16 22 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 24 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 25 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 26 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 27 H 0.28 16.07 8.73 -92.71 -0.81 15.26 16 28 H 0.14 6.98 8.06 -2.91 -0.02 6.95 16 29 H 0.06 2.20 4.49 -2.39 -0.01 2.19 16 30 H 0.10 2.55 8.07 -2.38 -0.02 2.54 16 31 H 0.05 1.92 5.82 -2.39 -0.01 1.91 16 32 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -68.09 277.70 4.09 -64.00 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 0.85 Total: 5.36 kcal Atomic # 6 Polarization: -57.89 SS G_CDS: 3.73 Total: -54.16 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -0.74 Total: -75.84 kcal Atomic # 14 Polarization: 56.09 SS G_CDS: 1.56 Total: 57.65 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.31 Total: 2.99 kcal Total: -68.09 4.09 -64.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076064553.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.185 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds