Wall clock time and date at job start Mon Mar 30 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38375 * 119.92393 * 2 1 4 4 C 1.38374 * 120.29735 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.92373 * 180.02562 * 4 3 2 6 6 C 1.37937 * 120.15008 * 359.97438 * 4 3 2 7 7 C 1.39617 * 119.84940 * 0.02562 * 6 4 3 8 8 C 1.47775 * 120.14836 * 180.02562 * 7 6 4 9 9 N 1.29838 * 125.06131 * 359.69396 * 8 7 6 10 10 C 1.32769 * 116.00508 * 179.78902 * 9 8 7 11 11 C 1.41155 * 122.77350 * 180.23639 * 10 9 8 12 12 H 1.07995 * 119.99757 * 180.28118 * 11 10 9 13 13 C 1.39661 * 119.99890 * 0.29127 * 11 10 9 14 14 N 1.31045 * 119.99686 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99715 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47295 * 89.99763 * 15 13 11 17 17 H 1.48497 * 109.46886 * 209.99473 * 15 13 11 18 18 H 1.48493 * 109.47343 * 329.99771 * 15 13 11 19 19 C 1.37982 * 114.45259 * 0.50260 * 10 9 8 20 20 S 1.70996 * 108.89337 * 359.73530 * 19 10 9 21 21 C 1.37938 * 119.92478 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47245 * 89.99799 * 1 2 3 23 23 H 1.08994 * 109.46922 * 210.00157 * 1 2 3 24 24 H 1.09000 * 109.47234 * 329.99934 * 1 2 3 25 25 H 1.08001 * 119.85335 * 359.70312 * 3 2 1 26 26 H 1.09000 * 109.47551 * 89.99832 * 5 4 3 27 27 H 1.08995 * 109.46882 * 210.00127 * 5 4 3 28 28 H 1.09004 * 109.47160 * 329.99817 * 5 4 3 29 29 H 1.08005 * 120.07752 * 180.02562 * 6 4 3 30 30 H 0.97002 * 119.99274 * 180.02562 * 14 13 11 31 31 H 1.08000 * 125.55701 * 179.71428 * 19 10 9 32 32 H 1.08000 * 120.07862 * 0.04360 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5810 1.2083 0.0005 5 6 4.3242 2.5193 0.0011 6 6 4.2816 0.0201 0.0016 7 6 3.5914 -1.1936 0.0016 8 6 4.3352 -2.4704 0.0033 9 7 5.6290 -2.5799 -0.0008 10 6 6.1085 -3.8180 0.0061 11 6 7.4911 -4.1019 0.0078 12 1 7.8319 -5.1267 0.0089 13 6 8.4184 -3.0576 0.0083 14 7 8.0048 -1.8141 0.0066 15 14 10.2482 -3.4334 0.0112 16 1 10.7352 -3.5342 -1.3881 17 1 10.9760 -2.3446 0.7113 18 1 10.4882 -4.7200 0.7127 19 6 5.1434 -4.8042 0.0057 20 16 3.5998 -4.0685 0.0035 21 6 2.1951 -1.1955 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6537 2.1325 -0.0049 26 1 4.5030 2.8352 1.0289 27 1 5.2778 2.3965 -0.5124 28 1 3.7294 3.2744 -0.5128 29 1 5.3616 0.0285 0.0024 30 1 8.6489 -1.0888 0.0065 31 1 5.3322 -5.8676 0.0062 32 1 1.6552 -2.1308 0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076064561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:27 Heat of formation + Delta-G solvation = 44.743141 kcal Electronic energy + Delta-G solvation = -16124.973419 eV Core-core repulsion = 13562.208732 eV Total energy + Delta-G solvation = -2562.764686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.14225 -37.64945 -33.40509 -33.24704 -32.06495 -28.78281 -27.06835 -26.32569 -25.63472 -23.85828 -20.73421 -20.43180 -18.54662 -17.46096 -15.94771 -15.34293 -15.17133 -14.89851 -14.20363 -13.87379 -13.36743 -13.03038 -12.90000 -12.78314 -12.60415 -12.32867 -11.89016 -11.63451 -11.51944 -11.36931 -11.10786 -10.89758 -10.68133 -10.66430 -10.39598 -9.69976 -9.40447 -8.69103 -8.19275 -8.10907 -7.88114 -7.12471 -6.55479 -4.38755 1.29593 1.77906 2.56132 2.82324 3.05940 3.09338 3.13359 3.59651 3.99327 4.05504 4.47231 4.96070 5.02589 5.19984 5.48095 5.50040 5.53445 5.62670 5.70807 5.79269 5.84453 5.97037 5.99935 6.11062 6.42157 6.46664 6.67007 6.89764 6.99613 7.02651 7.12652 7.23235 7.39771 7.47480 8.16904 8.51601 8.85936 9.55879 10.32366 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022634 B = 0.006514 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.769664 B = 4297.687363 C = 5514.009618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.090 4.090 5 C -0.110 4.110 6 C -0.082 4.082 7 C 0.013 3.987 8 C 0.075 3.925 9 N -0.385 5.385 10 C 0.227 3.773 11 C -0.432 4.432 12 H 0.084 0.916 13 C 0.072 3.928 14 N -0.752 5.752 15 Si 0.912 3.088 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.450 4.450 20 S -0.012 6.012 21 C -0.115 4.115 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.142 0.858 30 H 0.273 0.727 31 H 0.140 0.860 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.615 7.026 -0.007 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.103 4.103 7 C 0.009 3.991 8 C -0.204 4.204 9 N -0.099 5.099 10 C 0.102 3.898 11 C -0.466 4.466 12 H 0.102 0.898 13 C -0.150 4.150 14 N -0.375 5.375 15 Si 0.737 3.263 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.590 4.590 20 S 0.238 5.762 21 C -0.135 4.135 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.134 0.866 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.160 0.840 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.146 7.266 -0.011 11.681 hybrid contribution 1.870 -0.620 0.000 1.970 sum -7.277 6.645 -0.012 9.855 Atomic orbital electron populations 1.20730 0.91425 1.02399 1.01994 1.19629 0.95653 0.92772 1.01019 1.20850 0.93477 0.97051 1.03126 1.19814 0.93592 0.95212 1.00440 1.20743 1.00085 0.93752 1.02062 1.21364 1.01379 0.90043 0.97563 1.18035 0.91745 0.90219 0.99133 1.25875 0.92573 0.94336 1.07592 1.67424 1.06867 1.24306 1.11313 1.17884 0.94850 0.83705 0.93314 1.18944 0.88146 0.94222 1.45329 0.89755 1.25965 1.01328 0.94709 0.93015 1.70106 1.35715 0.99245 1.32476 0.86251 0.81741 0.79217 0.79129 1.19480 1.20193 1.18648 1.25368 0.92945 1.02329 1.38333 1.82460 1.13467 1.03643 1.76634 1.21021 0.92798 0.97706 1.01970 0.91495 0.91683 0.91880 0.86620 0.91463 0.91346 0.92035 0.83972 0.91583 0.84237 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.09 -1.34 5.87 -104.68 -0.61 -1.95 16 3 C -0.13 -1.81 9.35 -39.48 -0.37 -2.18 16 4 C -0.09 -1.44 5.87 -104.68 -0.61 -2.06 16 5 C -0.11 -1.40 10.01 36.01 0.36 -1.03 16 6 C -0.08 -1.62 9.32 -39.18 -0.37 -1.98 16 7 C 0.01 0.26 5.87 -104.97 -0.62 -0.35 16 8 C 0.07 1.81 7.30 -14.50 -0.11 1.71 16 9 N -0.38 -10.61 7.98 -9.17 -0.07 -10.68 16 10 C 0.23 6.41 6.45 -86.45 -0.56 5.85 16 11 C -0.43 -11.99 9.23 -37.94 -0.35 -12.34 16 12 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 13 C 0.07 1.88 5.49 -17.36 -0.10 1.78 16 14 N -0.75 -20.15 11.69 55.53 0.65 -19.50 16 15 Si 0.91 19.15 29.56 -169.99 -5.02 14.13 16 16 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 19 C -0.45 -11.69 10.99 30.64 0.34 -11.35 16 20 S -0.01 -0.28 22.07 -107.50 -2.37 -2.65 16 21 C -0.11 -2.01 9.25 -39.17 -0.36 -2.37 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 24 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.14 3.10 7.80 -52.48 -0.41 2.69 16 30 H 0.27 6.64 8.30 -40.82 -0.34 6.31 16 31 H 0.14 3.43 8.06 -52.49 -0.42 3.00 16 32 H 0.12 2.01 7.27 -52.49 -0.38 1.62 16 LS Contribution 293.58 15.07 4.42 4.42 Total: -1.00 -29.70 293.58 -9.10 -38.80 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -3.71 Total: 2.59 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -2.99 Total: -27.11 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.58 Total: -30.18 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.37 Total: -2.65 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.70 -9.10 -38.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076064561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.543 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds