Wall clock time and date at job start Mon Mar 30 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38375 * 119.92393 * 2 1 4 4 C 1.38374 * 120.29735 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.92373 * 180.02562 * 4 3 2 6 6 C 1.37937 * 120.15008 * 359.97438 * 4 3 2 7 7 C 1.39617 * 119.84940 * 0.02562 * 6 4 3 8 8 C 1.47775 * 120.14836 * 180.02562 * 7 6 4 9 9 N 1.29838 * 125.06131 * 359.69396 * 8 7 6 10 10 C 1.32769 * 116.00508 * 179.78902 * 9 8 7 11 11 C 1.41155 * 122.77350 * 180.23639 * 10 9 8 12 12 H 1.07995 * 119.99757 * 180.28118 * 11 10 9 13 13 C 1.39661 * 119.99890 * 0.29127 * 11 10 9 14 14 N 1.31045 * 119.99686 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99715 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47295 * 89.99763 * 15 13 11 17 17 H 1.48497 * 109.46886 * 209.99473 * 15 13 11 18 18 H 1.48493 * 109.47343 * 329.99771 * 15 13 11 19 19 C 1.37982 * 114.45259 * 0.50260 * 10 9 8 20 20 S 1.70996 * 108.89337 * 359.73530 * 19 10 9 21 21 C 1.37938 * 119.92478 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47245 * 89.99799 * 1 2 3 23 23 H 1.08994 * 109.46922 * 210.00157 * 1 2 3 24 24 H 1.09000 * 109.47234 * 329.99934 * 1 2 3 25 25 H 1.08001 * 119.85335 * 359.70312 * 3 2 1 26 26 H 1.09000 * 109.47551 * 89.99832 * 5 4 3 27 27 H 1.08995 * 109.46882 * 210.00127 * 5 4 3 28 28 H 1.09004 * 109.47160 * 329.99817 * 5 4 3 29 29 H 1.08005 * 120.07752 * 180.02562 * 6 4 3 30 30 H 0.97002 * 119.99274 * 180.02562 * 14 13 11 31 31 H 1.08000 * 125.55701 * 179.71428 * 19 10 9 32 32 H 1.08000 * 120.07862 * 0.04360 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5810 1.2083 0.0005 5 6 4.3242 2.5193 0.0011 6 6 4.2816 0.0201 0.0016 7 6 3.5914 -1.1936 0.0016 8 6 4.3352 -2.4704 0.0033 9 7 5.6290 -2.5799 -0.0008 10 6 6.1085 -3.8180 0.0061 11 6 7.4911 -4.1019 0.0078 12 1 7.8319 -5.1267 0.0089 13 6 8.4184 -3.0576 0.0083 14 7 8.0048 -1.8141 0.0066 15 14 10.2482 -3.4334 0.0112 16 1 10.7352 -3.5342 -1.3881 17 1 10.9760 -2.3446 0.7113 18 1 10.4882 -4.7200 0.7127 19 6 5.1434 -4.8042 0.0057 20 16 3.5998 -4.0685 0.0035 21 6 2.1951 -1.1955 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6537 2.1325 -0.0049 26 1 4.5030 2.8352 1.0289 27 1 5.2778 2.3965 -0.5124 28 1 3.7294 3.2744 -0.5128 29 1 5.3616 0.0285 0.0024 30 1 8.6489 -1.0888 0.0065 31 1 5.3322 -5.8676 0.0062 32 1 1.6552 -2.1308 0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076064561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:27 Heat of formation + Delta-G solvation = 28.735780 kcal Electronic energy + Delta-G solvation = -16125.667550 eV Core-core repulsion = 13562.208732 eV Total energy + Delta-G solvation = -2563.458818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54733 -39.49453 -35.30152 -34.39802 -33.59946 -30.60487 -28.15513 -27.66093 -27.50356 -25.53966 -22.43917 -21.69353 -20.32332 -19.35286 -17.48535 -17.08826 -16.92932 -16.22218 -15.82506 -15.19754 -14.95328 -14.57115 -14.28180 -13.92652 -13.89387 -13.54203 -13.46682 -13.25308 -12.98485 -12.76234 -12.62930 -12.45995 -12.28133 -12.09655 -11.88052 -11.58369 -11.24573 -10.32365 -10.02681 -9.73064 -9.46737 -8.91754 -8.49195 -6.44977 -0.29771 0.46977 0.87944 0.95898 1.35125 1.41124 1.50290 1.65719 2.20998 2.32136 2.89729 3.43091 3.45836 3.94880 3.97067 4.26967 4.41830 4.46111 4.58417 4.75492 4.85757 4.86644 4.94480 4.96556 5.05218 5.09441 5.22730 5.24123 5.39773 5.43214 5.63409 5.66767 5.72978 6.10986 6.13718 6.49442 6.82601 7.61081 8.40334 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022634 B = 0.006514 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.769664 B = 4297.687363 C = 5514.009618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.083 4.083 3 C -0.110 4.110 4 C -0.089 4.089 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.028 4.028 8 C 0.073 3.927 9 N -0.430 5.430 10 C 0.196 3.804 11 C -0.471 4.471 12 H 0.085 0.915 13 C 0.026 3.974 14 N -0.783 5.783 15 Si 0.993 3.007 16 H -0.262 1.262 17 H -0.265 1.265 18 H -0.258 1.258 19 C -0.487 4.487 20 S 0.049 5.951 21 C -0.119 4.119 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.160 0.840 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.281 0.719 31 H 0.143 0.857 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 9.089 0.000 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.089 4.089 5 C -0.165 4.165 6 C -0.127 4.127 7 C -0.032 4.032 8 C -0.206 4.206 9 N -0.145 5.145 10 C 0.071 3.929 11 C -0.506 4.506 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.406 5.406 15 Si 0.813 3.187 16 H -0.186 1.186 17 H -0.189 1.189 18 H -0.181 1.181 19 C -0.626 4.626 20 S 0.300 5.700 21 C -0.139 4.139 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.107 0.893 25 H 0.178 0.822 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.030 9.310 -0.004 14.434 hybrid contribution 2.232 -1.133 -0.004 2.503 sum -8.799 8.177 -0.008 12.012 Atomic orbital electron populations 1.20832 0.88010 1.04046 1.03493 1.20134 0.97976 0.91688 0.98468 1.21363 0.92669 0.98747 1.00129 1.20162 0.94770 0.94976 0.99025 1.20809 0.99777 0.92763 1.03125 1.21224 0.99944 0.91610 0.99958 1.18201 0.93176 0.88998 1.02785 1.26671 0.92446 0.96620 1.04839 1.67442 1.08598 1.24261 1.14218 1.18352 0.95910 0.84756 0.93854 1.19314 0.89034 0.94973 1.47239 0.89728 1.26938 1.06362 0.94085 0.91921 1.70218 1.37708 1.00270 1.32446 0.85046 0.74858 0.79298 0.79481 1.18631 1.18923 1.18138 1.25626 0.94995 1.02584 1.39386 1.81912 1.10572 1.01646 1.75848 1.21167 0.91270 0.99456 1.02050 0.89884 0.91096 0.89320 0.82222 0.90287 0.92510 0.88816 0.87582 0.90895 0.83936 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 10.01 71.24 0.71 -1.11 16 2 C -0.08 -2.15 5.87 -19.90 -0.12 -2.27 16 3 C -0.11 -2.72 9.35 22.33 0.21 -2.51 16 4 C -0.09 -2.70 5.87 -19.90 -0.12 -2.82 16 5 C -0.11 -2.51 10.01 71.24 0.71 -1.80 16 6 C -0.11 -4.30 9.32 22.53 0.21 -4.09 16 7 C -0.03 -1.18 5.87 -20.09 -0.12 -1.30 16 8 C 0.07 3.69 7.30 87.51 0.64 4.33 16 9 N -0.43 -25.16 7.98 -182.92 -1.46 -26.62 16 10 C 0.20 11.72 6.45 39.66 0.26 11.97 16 11 C -0.47 -27.58 9.23 23.33 0.22 -27.36 16 12 H 0.08 4.70 7.84 -2.91 -0.02 4.68 16 13 C 0.03 1.41 5.49 85.15 0.47 1.88 16 14 N -0.78 -43.95 11.69 21.78 0.25 -43.70 16 15 Si 0.99 40.28 29.56 68.60 2.03 42.30 16 16 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 17 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 C -0.49 -26.49 10.99 67.76 0.74 -25.75 16 20 S 0.05 2.25 22.07 -56.49 -1.25 1.00 16 21 C -0.12 -4.03 9.25 22.53 0.21 -3.82 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 24 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 25 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 28 H 0.09 1.58 8.08 -2.38 -0.02 1.56 16 29 H 0.11 5.02 7.80 -2.91 -0.02 5.00 16 30 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 31 H 0.14 7.37 8.06 -2.91 -0.02 7.34 16 32 H 0.13 4.03 7.27 -2.91 -0.02 4.01 16 Total: -1.00 -69.60 293.58 4.72 -64.88 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.12 Total: 16.78 kcal Atomic # 6 Polarization: -58.67 SS G_CDS: 4.02 Total: -54.65 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -1.21 Total: -70.32 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.25 Total: 1.00 kcal Total: -69.60 4.72 -64.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076064561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.612 kcal (2) G-P(sol) polarization free energy of solvation -69.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds