Wall clock time and date at job start Mon Mar 30 2020 07:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48502 * 109.46982 * 240.00030 * 3 2 1 5 5 H 1.48497 * 109.47428 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47297 * 120.00482 * 3 2 1 7 7 C 1.37873 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00454 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47132 * 180.02562 * 9 7 2 11 11 S 1.75738 * 125.01548 * 269.95521 * 10 9 7 12 12 C 1.75596 * 91.17472 * 180.46349 * 11 10 9 13 13 C 1.33237 * 110.72041 * 0.45167 * 12 11 10 14 14 C 1.33639 * 125.02021 * 89.99643 * 10 9 7 15 15 C 1.49378 * 127.71698 * 357.03817 * 14 10 9 16 16 C 1.39587 * 132.32812 * 13.91358 * 15 14 10 17 17 C 1.35303 * 106.87870 * 178.59524 * 16 15 14 18 18 N 1.36814 * 108.61260 * 0.22007 * 17 16 15 19 19 H 0.96996 * 125.49366 * 180.74745 * 18 17 16 20 20 C 1.35570 * 109.00705 * 0.73302 * 18 17 16 21 21 C 1.50427 * 129.79820 * 176.99295 * 20 18 17 22 22 C 1.52034 * 125.00972 * 177.19096 * 13 12 11 23 23 H 0.97001 * 120.00146 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47035 * 59.99831 * 9 7 2 25 25 H 1.09000 * 109.47077 * 299.99261 * 9 7 2 26 26 H 1.08003 * 124.63678 * 180.47280 * 12 11 10 27 27 H 1.07997 * 126.56018 * 358.59613 * 16 15 14 28 28 H 1.08000 * 125.69309 * 180.22099 * 17 16 15 29 29 H 1.08994 * 109.08115 * 269.81692 * 21 20 18 30 30 H 1.08999 * 109.07869 * 28.86946 * 21 20 18 31 31 H 1.09000 * 109.10074 * 268.73097 * 22 13 12 32 32 H 1.09001 * 109.09870 * 27.76072 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6445 -0.0015 11 16 2.8859 -4.4110 -1.4406 12 6 3.8227 -5.5287 -0.4625 13 6 3.6153 -5.3077 0.8349 14 6 2.7279 -4.2279 1.0931 15 6 2.4860 -3.8528 2.5187 16 6 1.5418 -3.0226 3.1250 17 6 1.7704 -3.0753 4.4575 18 7 2.8304 -3.9096 4.6861 19 1 3.1950 -4.1312 5.5572 20 6 3.2886 -4.3767 3.4988 21 6 4.4634 -5.2687 3.2037 22 6 4.2157 -6.1270 1.9662 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5562 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 4.4776 -6.2908 -0.8585 27 1 0.7754 -2.4483 2.6260 28 1 1.2097 -2.5469 5.2144 29 1 5.3466 -4.6518 3.0386 30 1 4.6392 -5.9209 4.0592 31 1 3.5310 -6.9351 2.2237 32 1 5.1616 -6.5548 1.6337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076064575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:02 Heat of formation + Delta-G solvation = 62.692840 kcal Electronic energy + Delta-G solvation = -16727.170528 eV Core-core repulsion = 14165.184199 eV Total energy + Delta-G solvation = -2561.986329 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83242 -37.53919 -33.99784 -32.55893 -30.94284 -29.95083 -28.04025 -25.75369 -24.29157 -22.95816 -20.47983 -20.33097 -19.41336 -16.89118 -16.68294 -16.30819 -16.03366 -14.71454 -14.41985 -13.85923 -13.48672 -13.35954 -12.99441 -12.56355 -12.29983 -12.12690 -11.86847 -11.58613 -11.31075 -11.25491 -10.83473 -10.78372 -10.62673 -10.16293 -9.90515 -9.62226 -9.38011 -8.79751 -8.33456 -7.70947 -7.57926 -6.77250 -5.96975 -3.99586 1.87443 2.48039 2.52858 2.84215 3.15331 3.37241 3.40234 3.44922 3.65605 4.26437 4.51490 5.04251 5.14106 5.33725 5.37863 5.51205 5.67335 5.71461 5.78742 5.91776 6.09439 6.14351 6.22448 6.51025 6.65877 6.77590 6.92975 7.23313 7.26385 7.54587 7.65849 7.70679 7.83294 7.98461 8.05270 8.36614 9.02798 9.62719 11.12141 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.008759 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.670404 B = 3196.000593 C = 4275.512095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.056 0.944 9 C 0.077 3.923 10 C -0.091 4.091 11 S 0.066 5.934 12 C -0.250 4.250 13 C -0.085 4.085 14 C -0.074 4.074 15 C -0.074 4.074 16 C -0.148 4.148 17 C -0.041 4.041 18 N -0.549 5.549 19 H 0.405 0.595 20 C -0.012 4.012 21 C -0.033 4.033 22 C -0.045 4.045 23 H 0.262 0.738 24 H 0.027 0.973 25 H 0.049 0.951 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.161 0.839 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.745 -10.955 7.078 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.039 3.961 10 C -0.208 4.208 11 S 0.332 5.668 12 C -0.384 4.384 13 C -0.099 4.099 14 C -0.084 4.084 15 C -0.083 4.083 16 C -0.172 4.172 17 C -0.170 4.170 18 N -0.143 5.143 19 H 0.240 0.760 20 C -0.126 4.126 21 C -0.072 4.072 22 C -0.085 4.085 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.167 0.833 27 H 0.169 0.831 28 H 0.178 0.822 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.471 -10.651 5.595 13.661 hybrid contribution 0.830 0.762 1.829 2.149 sum 7.301 -9.889 7.424 14.360 Atomic orbital electron populations 1.69934 1.05882 1.26798 1.50881 1.24928 0.94834 0.98947 0.95327 0.86638 0.79591 0.83024 0.78713 1.20241 1.21294 1.20222 1.20956 0.92969 0.89492 1.50489 0.92618 1.18054 0.91539 0.87848 0.98697 1.24900 1.02686 1.00644 0.92620 1.84035 1.42512 1.29070 1.11188 1.24827 1.10063 1.07111 0.96428 1.19782 0.99179 0.97519 0.93445 1.17565 1.01284 0.97753 0.91848 1.17699 0.98695 1.01945 0.89980 1.20766 1.02156 1.02127 0.92184 1.21888 0.95425 1.01901 0.97779 1.41443 1.27271 1.38464 1.07142 0.75965 1.20378 1.01333 1.05757 0.85113 1.19644 0.94176 0.95898 0.97449 1.20179 1.00163 0.96411 0.91722 0.92867 0.95476 0.93280 0.83304 0.83129 0.82212 0.90912 0.91652 0.90946 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.50 -14.23 9.09 -34.44 -0.31 -14.54 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.08 2.04 5.10 -29.04 -0.15 1.89 16 10 C -0.09 -2.12 5.69 -35.92 -0.20 -2.32 16 11 S 0.07 1.30 23.29 -107.50 -2.50 -1.21 16 12 C -0.25 -4.29 11.00 28.99 0.32 -3.97 16 13 C -0.09 -1.54 5.76 -104.21 -0.60 -2.14 16 14 C -0.07 -1.60 5.90 -105.37 -0.62 -2.22 16 15 C -0.07 -1.53 6.10 -105.17 -0.64 -2.17 16 16 C -0.15 -3.04 10.04 -40.12 -0.40 -3.44 16 17 C -0.04 -0.66 11.94 -16.37 -0.20 -0.86 16 18 N -0.55 -7.82 6.04 -8.66 -0.05 -7.88 16 19 H 0.41 4.07 8.96 -40.82 -0.37 3.70 16 20 C -0.01 -0.19 7.17 -81.49 -0.58 -0.78 16 21 C -0.03 -0.44 6.14 -28.20 -0.17 -0.62 16 22 C -0.04 -0.61 6.09 -27.41 -0.17 -0.77 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 1.34 5.38 -51.93 -0.28 1.06 16 26 H 0.15 2.06 8.06 -52.48 -0.42 1.64 16 27 H 0.15 3.43 6.08 -52.49 -0.32 3.11 16 28 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 282.26 15.07 4.25 4.25 Total: -1.00 -31.82 282.26 -9.88 -41.70 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.46 Total: 2.07 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -3.83 Total: -30.30 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.68 Total: -33.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.50 Total: -1.21 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.82 -9.88 -41.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076064575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.394 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds