Wall clock time and date at job start Mon Mar 30 2020 07:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48502 * 109.46982 * 240.00030 * 3 2 1 5 5 H 1.48497 * 109.47428 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47297 * 120.00482 * 3 2 1 7 7 C 1.37873 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00454 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47132 * 180.02562 * 9 7 2 11 11 S 1.75738 * 125.01548 * 269.95521 * 10 9 7 12 12 C 1.75596 * 91.17472 * 180.46349 * 11 10 9 13 13 C 1.33237 * 110.72041 * 0.45167 * 12 11 10 14 14 C 1.33639 * 125.02021 * 89.99643 * 10 9 7 15 15 C 1.49378 * 127.71698 * 357.03817 * 14 10 9 16 16 C 1.39587 * 132.32812 * 13.91358 * 15 14 10 17 17 C 1.35303 * 106.87870 * 178.59524 * 16 15 14 18 18 N 1.36814 * 108.61260 * 0.22007 * 17 16 15 19 19 H 0.96996 * 125.49366 * 180.74745 * 18 17 16 20 20 C 1.35570 * 109.00705 * 0.73302 * 18 17 16 21 21 C 1.50427 * 129.79820 * 176.99295 * 20 18 17 22 22 C 1.52034 * 125.00972 * 177.19096 * 13 12 11 23 23 H 0.97001 * 120.00146 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47035 * 59.99831 * 9 7 2 25 25 H 1.09000 * 109.47077 * 299.99261 * 9 7 2 26 26 H 1.08003 * 124.63678 * 180.47280 * 12 11 10 27 27 H 1.07997 * 126.56018 * 358.59613 * 16 15 14 28 28 H 1.08000 * 125.69309 * 180.22099 * 17 16 15 29 29 H 1.08994 * 109.08115 * 269.81692 * 21 20 18 30 30 H 1.08999 * 109.07869 * 28.86946 * 21 20 18 31 31 H 1.09000 * 109.10074 * 268.73097 * 22 13 12 32 32 H 1.09001 * 109.09870 * 27.76072 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6445 -0.0015 11 16 2.8859 -4.4110 -1.4406 12 6 3.8227 -5.5287 -0.4625 13 6 3.6153 -5.3077 0.8349 14 6 2.7279 -4.2279 1.0931 15 6 2.4860 -3.8528 2.5187 16 6 1.5418 -3.0226 3.1250 17 6 1.7704 -3.0753 4.4575 18 7 2.8304 -3.9096 4.6861 19 1 3.1950 -4.1312 5.5572 20 6 3.2886 -4.3767 3.4988 21 6 4.4634 -5.2687 3.2037 22 6 4.2157 -6.1270 1.9662 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5562 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 4.4776 -6.2908 -0.8585 27 1 0.7754 -2.4483 2.6260 28 1 1.2097 -2.5469 5.2144 29 1 5.3466 -4.6518 3.0386 30 1 4.6392 -5.9209 4.0592 31 1 3.5310 -6.9351 2.2237 32 1 5.1616 -6.5548 1.6337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076064575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:02 Heat of formation + Delta-G solvation = 43.739957 kcal Electronic energy + Delta-G solvation = -16727.992386 eV Core-core repulsion = 14165.184199 eV Total energy + Delta-G solvation = -2562.808188 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.16719 -38.94844 -35.76136 -34.22933 -32.40352 -31.57078 -29.60219 -27.39731 -25.73802 -24.68779 -21.98732 -21.70795 -20.81152 -18.51584 -18.15943 -18.05171 -17.65744 -16.43897 -15.88266 -15.14994 -14.82713 -14.67135 -14.47358 -14.40675 -14.02630 -13.72284 -13.21073 -13.10244 -12.99960 -12.78160 -12.58252 -12.39245 -12.06114 -11.71785 -11.66461 -11.49239 -11.35749 -10.56422 -10.25020 -9.15808 -9.08761 -8.28959 -8.10037 -6.28864 0.33847 0.96408 1.21641 1.34057 1.36115 1.39421 1.47333 1.70291 2.39975 2.47114 2.76000 3.12925 3.94912 4.04570 4.19061 4.36114 4.41601 4.59720 4.65156 4.71980 4.78885 4.96526 4.98496 5.11669 5.19168 5.27357 5.36463 5.45858 5.64629 5.74249 5.82989 5.91802 6.14076 6.19093 6.36234 6.78390 6.94109 7.37105 8.91552 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.008759 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.670404 B = 3196.000593 C = 4275.512095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.043 0.957 9 C 0.094 3.906 10 C -0.157 4.157 11 S 0.049 5.951 12 C -0.223 4.223 13 C -0.100 4.100 14 C -0.070 4.070 15 C -0.136 4.136 16 C -0.199 4.199 17 C -0.020 4.020 18 N -0.525 5.525 19 H 0.432 0.568 20 C 0.013 3.987 21 C -0.035 4.035 22 C -0.041 4.041 23 H 0.265 0.735 24 H -0.008 1.008 25 H 0.024 0.976 26 H 0.194 0.806 27 H 0.107 0.893 28 H 0.194 0.806 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 -12.760 9.277 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.055 3.945 10 C -0.273 4.273 11 S 0.314 5.686 12 C -0.357 4.357 13 C -0.113 4.113 14 C -0.081 4.081 15 C -0.145 4.145 16 C -0.223 4.223 17 C -0.151 4.151 18 N -0.121 5.121 19 H 0.272 0.728 20 C -0.104 4.104 21 C -0.073 4.073 22 C -0.081 4.081 23 H 0.074 0.926 24 H 0.010 0.990 25 H 0.042 0.958 26 H 0.211 0.789 27 H 0.125 0.875 28 H 0.211 0.789 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.702 -12.467 7.819 17.627 hybrid contribution -0.185 1.246 1.234 1.763 sum 9.517 -11.221 9.053 17.275 Atomic orbital electron populations 1.70060 1.07394 1.27812 1.51506 1.25791 0.95726 1.02562 0.94731 0.85595 0.78464 0.78644 0.78948 1.19441 1.20133 1.19654 1.21139 0.92412 0.91017 1.50551 0.93843 1.17592 0.91739 0.89379 0.95742 1.24550 1.05310 1.02238 0.95245 1.83864 1.43604 1.30284 1.10815 1.25294 1.08709 1.06141 0.95593 1.20236 0.98733 0.96991 0.95361 1.18131 1.00211 0.97754 0.91997 1.18047 1.01069 1.04545 0.90828 1.20626 1.03016 1.04100 0.94602 1.22157 0.95302 1.01035 0.96601 1.41411 1.25944 1.36775 1.07960 0.72806 1.20901 1.00785 1.04154 0.84564 1.19875 0.92213 0.96094 0.99152 1.20354 1.01952 0.95835 0.89979 0.92612 0.98982 0.95771 0.78879 0.87511 0.78888 0.90214 0.86968 0.89614 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.44 0.28 -57.37 16 2 C 0.01 0.59 5.46 84.65 0.46 1.06 16 3 Si 0.96 46.48 29.54 68.60 2.03 48.51 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.51 -31.19 9.09 25.60 0.23 -30.96 16 8 H 0.04 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.09 5.46 5.10 29.10 0.15 5.61 16 10 C -0.16 -7.77 5.69 24.64 0.14 -7.63 16 11 S 0.05 1.97 23.29 -56.49 -1.32 0.66 16 12 C -0.22 -7.12 11.00 66.69 0.73 -6.39 16 13 C -0.10 -3.39 5.76 -19.60 -0.11 -3.50 16 14 C -0.07 -3.08 5.90 -20.35 -0.12 -3.20 16 15 C -0.14 -5.72 6.10 -20.22 -0.12 -5.84 16 16 C -0.20 -8.64 10.04 21.92 0.22 -8.42 16 17 C -0.02 -0.64 11.94 83.24 0.99 0.35 16 18 N -0.53 -13.23 6.04 -181.31 -1.10 -14.32 16 19 H 0.43 6.53 8.96 -92.71 -0.83 5.70 16 20 C 0.01 0.39 7.17 41.62 0.30 0.69 16 21 C -0.04 -0.75 6.14 29.64 0.18 -0.57 16 22 C -0.04 -0.91 6.09 30.15 0.18 -0.73 16 23 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H 0.02 1.49 5.38 -2.39 -0.01 1.48 16 26 H 0.19 4.38 8.06 -2.91 -0.02 4.36 16 27 H 0.11 5.49 6.08 -2.91 -0.02 5.47 16 28 H 0.19 4.61 8.06 -2.91 -0.02 4.58 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -76.87 282.26 3.46 -73.41 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.32 Total: 8.65 kcal Atomic # 6 Polarization: -62.76 SS G_CDS: 3.24 Total: -59.52 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -0.81 Total: -71.70 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.32 Total: 0.66 kcal Total: -76.87 3.46 -73.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076064575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.146 kcal (2) G-P(sol) polarization free energy of solvation -76.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds