Wall clock time and date at job start Mon Mar 30 2020 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30959 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48498 * 109.47227 * 274.98630 * 3 2 1 5 5 H 1.48501 * 109.47039 * 34.98508 * 3 2 1 6 6 H 1.48504 * 109.46860 * 154.98473 * 3 2 1 7 7 C 1.39904 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99609 * 186.33855 * 7 2 1 9 9 C 1.39697 * 120.00519 * 6.34105 * 7 2 1 10 10 C 1.40059 * 126.91604 * 173.08184 * 9 7 2 11 11 N 1.32218 * 108.05781 * 179.97438 * 10 9 7 12 12 C 1.32560 * 110.04595 * 0.02562 * 11 10 9 13 13 C 1.41786 * 125.48390 * 180.02562 * 12 11 10 14 14 C 1.36279 * 124.97252 * 0.02562 * 13 12 11 15 15 C 1.38809 * 115.09812 * 179.97438 * 14 13 12 16 16 N 1.39746 * 139.87161 * 180.02562 * 15 14 13 17 17 H 0.96997 * 125.65434 * 359.97324 * 16 15 14 18 18 C 1.36323 * 108.69708 * 180.02562 * 16 15 14 19 19 C 1.34663 * 109.26830 * 359.97438 * 18 16 15 20 20 C 1.38381 * 113.41681 * 0.25752 * 15 14 13 21 21 S 1.75606 * 124.97451 * 179.97438 * 13 12 11 22 22 N 1.37281 * 109.03221 * 0.26214 * 12 11 10 23 23 H 0.96999 * 126.65211 * 179.73615 * 22 12 11 24 24 H 0.97006 * 119.99922 * 359.97438 * 1 2 3 25 25 H 1.08002 * 125.96835 * 0.02562 * 10 9 7 26 26 H 1.07998 * 122.45288 * 359.95238 * 14 13 12 27 27 H 1.07994 * 125.36263 * 179.97438 * 18 16 15 28 28 H 1.08000 * 126.05755 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 2.3857 2.1073 -1.3947 5 1 1.4976 2.6199 0.8028 6 1 3.5899 1.4120 0.5921 7 6 2.0090 -1.2117 0.0005 8 1 3.0841 -1.2145 0.1038 9 6 1.3170 -2.4178 -0.1325 10 6 1.8729 -3.6943 -0.2851 11 7 0.8818 -4.5647 -0.3761 12 6 -0.2830 -3.9374 -0.2932 13 6 -1.5572 -4.5564 -0.3521 14 6 -1.7696 -5.8941 -0.5030 15 6 -3.1030 -6.2787 -0.5340 16 7 -3.8791 -7.4342 -0.6582 17 1 -3.5377 -8.3359 -0.7645 18 6 -5.1956 -7.0840 -0.6063 19 6 -5.2948 -5.7498 -0.4532 20 6 -3.9841 -5.2189 -0.4101 21 16 -3.0928 -3.7118 -0.2402 22 7 -0.0570 -2.5913 -0.1464 23 1 -0.7293 -1.8967 -0.0653 24 1 -0.4850 0.8401 0.0004 25 1 2.9269 -3.9270 -0.3212 26 1 -0.9598 -6.6030 -0.5922 27 1 -6.0277 -7.7688 -0.6769 28 1 -6.2123 -5.1848 -0.3809 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076066430.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:23 Heat of formation + Delta-G solvation = 101.759288 kcal Electronic energy + Delta-G solvation = -15760.060940 eV Core-core repulsion = 13096.228316 eV Total energy + Delta-G solvation = -2663.832624 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.047 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59601 -39.90754 -34.85659 -33.88427 -30.66160 -30.49940 -29.67125 -27.40840 -24.60232 -22.72477 -20.94725 -20.24052 -20.05714 -18.55372 -17.75660 -17.48891 -15.70742 -14.97709 -14.78443 -14.23321 -13.83450 -13.39651 -13.38688 -13.07031 -12.83985 -12.39401 -11.86056 -11.74314 -11.56043 -11.25599 -11.01455 -10.94473 -10.53917 -10.21556 -9.73958 -9.17395 -8.65963 -8.54719 -8.00375 -7.22428 -7.21507 -6.71518 -4.50796 1.38520 2.11434 2.67741 2.75620 2.92573 2.94226 2.98021 3.23087 3.48594 3.69592 3.71716 4.58399 4.79696 5.08128 5.24480 5.48308 5.63945 5.99947 6.05117 6.30905 6.53400 6.69686 6.76941 6.92429 7.01994 7.09133 7.26549 7.49542 7.57383 7.85207 8.22250 8.37697 8.48855 9.23997 9.53258 9.85525 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.042443 B = 0.005119 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.548989 B = 5468.201231 C = 6114.680343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.064 3.936 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.425 4.425 8 H 0.102 0.898 9 C 0.221 3.779 10 C -0.148 4.148 11 N -0.432 5.432 12 C 0.101 3.899 13 C -0.011 4.011 14 C -0.167 4.167 15 C 0.075 3.925 16 N -0.567 5.567 17 H 0.412 0.588 18 C 0.012 3.988 19 C -0.158 4.158 20 C -0.241 4.241 21 S 0.114 5.886 22 N -0.569 5.569 23 H 0.425 0.575 24 H 0.293 0.707 25 H 0.151 0.849 26 H 0.137 0.863 27 H 0.166 0.834 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.067 -5.030 -0.532 8.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.152 4.152 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.460 4.460 8 H 0.120 0.880 9 C 0.100 3.900 10 C -0.306 4.306 11 N -0.151 5.151 12 C -0.143 4.143 13 C -0.131 4.131 14 C -0.201 4.201 15 C -0.040 4.040 16 N -0.169 5.169 17 H 0.249 0.751 18 C -0.119 4.119 19 C -0.188 4.188 20 C -0.361 4.361 21 S 0.373 5.627 22 N -0.187 5.187 23 H 0.272 0.728 24 H 0.104 0.896 25 H 0.168 0.832 26 H 0.155 0.845 27 H 0.184 0.816 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.643 -4.496 -0.474 8.880 hybrid contribution 0.406 0.030 -0.120 0.424 sum -7.237 -4.466 -0.594 8.525 Atomic orbital electron populations 1.68989 1.07966 1.30751 1.38270 1.26099 0.94972 1.02492 0.91637 0.85786 0.80056 0.78766 0.79256 1.19218 1.20012 1.18171 1.18881 0.95872 0.88176 1.43088 0.87956 1.19151 0.81627 0.95089 0.94105 1.22392 0.97038 0.88633 1.22535 1.69452 0.97157 1.34422 1.14081 1.18060 0.91194 0.81841 1.23233 1.20155 0.93339 0.94734 1.04852 1.18800 0.92544 0.94704 1.14012 1.18079 0.92257 0.85452 1.08230 1.41811 1.05077 1.07403 1.62566 0.75119 1.21556 0.85215 0.96027 1.09059 1.19944 0.94500 0.92909 1.11452 1.22765 0.97872 0.96390 1.19080 1.83697 0.95259 1.05609 1.78108 1.43908 1.08201 1.06992 1.59596 0.72758 0.89582 0.83172 0.84483 0.81650 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.71 10.80 55.55 0.60 -19.11 15 2 C 0.06 1.48 5.49 -17.30 -0.09 1.39 15 3 Si 0.94 17.33 29.57 -169.99 -5.03 12.31 15 4 H -0.27 -4.93 7.11 56.52 0.40 -4.52 15 5 H -0.28 -5.02 7.11 56.52 0.40 -4.62 15 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 7 C -0.42 -10.42 9.33 -38.41 -0.36 -10.78 15 8 H 0.10 2.32 7.85 -52.48 -0.41 1.91 15 9 C 0.22 5.77 6.74 -83.63 -0.56 5.21 15 10 C -0.15 -3.73 11.93 -16.70 -0.20 -3.93 15 11 N -0.43 -11.18 11.03 -11.58 -0.13 -11.31 15 12 C 0.10 2.55 7.68 -155.52 -1.20 1.36 15 13 C -0.01 -0.26 6.22 -38.93 -0.24 -0.50 15 14 C -0.17 -3.46 10.00 -40.08 -0.40 -3.86 15 15 C 0.08 1.38 7.67 -83.99 -0.64 0.74 15 16 N -0.57 -7.86 6.21 -10.82 -0.07 -7.93 15 17 H 0.41 4.28 8.96 -40.82 -0.37 3.92 15 18 C 0.01 0.15 11.86 -16.82 -0.20 -0.05 15 19 C -0.16 -2.39 10.84 -39.61 -0.43 -2.82 15 20 C -0.24 -4.48 7.31 -38.30 -0.28 -4.76 15 21 S 0.11 2.27 23.13 -107.50 -2.49 -0.21 15 22 N -0.57 -14.69 5.85 -9.55 -0.06 -14.75 15 23 H 0.43 10.79 6.41 -40.82 -0.26 10.52 15 24 H 0.29 6.30 8.30 -40.82 -0.34 5.96 15 25 H 0.15 3.36 8.06 -52.49 -0.42 2.94 15 26 H 0.14 2.77 8.06 -52.49 -0.42 2.35 15 27 H 0.17 1.34 8.06 -52.49 -0.42 0.92 15 28 H 0.14 1.72 8.06 -52.49 -0.42 1.30 15 LS Contribution 266.72 15.07 4.02 4.02 Total: -1.00 -28.96 266.72 -9.61 -38.58 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -1.87 Total: 16.41 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -4.61 Total: -18.00 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.35 Total: -53.09 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.49 Total: -0.21 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.96 -9.61 -38.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076066430.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.336 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds