Wall clock time and date at job start Mon Mar 30 2020 06:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30959 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48498 * 109.47227 * 274.98630 * 3 2 1 5 5 H 1.48501 * 109.47039 * 34.98508 * 3 2 1 6 6 H 1.48504 * 109.46860 * 154.98473 * 3 2 1 7 7 C 1.39904 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99609 * 186.33855 * 7 2 1 9 9 C 1.39697 * 120.00519 * 6.34105 * 7 2 1 10 10 C 1.40059 * 126.91604 * 173.08184 * 9 7 2 11 11 N 1.32218 * 108.05781 * 179.97438 * 10 9 7 12 12 C 1.32560 * 110.04595 * 0.02562 * 11 10 9 13 13 C 1.41786 * 125.48390 * 180.02562 * 12 11 10 14 14 C 1.36279 * 124.97252 * 0.02562 * 13 12 11 15 15 C 1.38809 * 115.09812 * 179.97438 * 14 13 12 16 16 N 1.39746 * 139.87161 * 180.02562 * 15 14 13 17 17 H 0.96997 * 125.65434 * 359.97324 * 16 15 14 18 18 C 1.36323 * 108.69708 * 180.02562 * 16 15 14 19 19 C 1.34663 * 109.26830 * 359.97438 * 18 16 15 20 20 C 1.38381 * 113.41681 * 0.25752 * 15 14 13 21 21 S 1.75606 * 124.97451 * 179.97438 * 13 12 11 22 22 N 1.37281 * 109.03221 * 0.26214 * 12 11 10 23 23 H 0.96999 * 126.65211 * 179.73615 * 22 12 11 24 24 H 0.97006 * 119.99922 * 359.97438 * 1 2 3 25 25 H 1.08002 * 125.96835 * 0.02562 * 10 9 7 26 26 H 1.07998 * 122.45288 * 359.95238 * 14 13 12 27 27 H 1.07994 * 125.36263 * 179.97438 * 18 16 15 28 28 H 1.08000 * 126.05755 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 2.3857 2.1073 -1.3947 5 1 1.4976 2.6199 0.8028 6 1 3.5899 1.4120 0.5921 7 6 2.0090 -1.2117 0.0005 8 1 3.0841 -1.2145 0.1038 9 6 1.3170 -2.4178 -0.1325 10 6 1.8729 -3.6943 -0.2851 11 7 0.8818 -4.5647 -0.3761 12 6 -0.2830 -3.9374 -0.2932 13 6 -1.5572 -4.5564 -0.3521 14 6 -1.7696 -5.8941 -0.5030 15 6 -3.1030 -6.2787 -0.5340 16 7 -3.8791 -7.4342 -0.6582 17 1 -3.5377 -8.3359 -0.7645 18 6 -5.1956 -7.0840 -0.6063 19 6 -5.2948 -5.7498 -0.4532 20 6 -3.9841 -5.2189 -0.4101 21 16 -3.0928 -3.7118 -0.2402 22 7 -0.0570 -2.5913 -0.1464 23 1 -0.7293 -1.8967 -0.0653 24 1 -0.4850 0.8401 0.0004 25 1 2.9269 -3.9270 -0.3212 26 1 -0.9598 -6.6030 -0.5922 27 1 -6.0277 -7.7688 -0.6769 28 1 -6.2123 -5.1848 -0.3809 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076066430.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:22 Heat of formation + Delta-G solvation = 83.912560 kcal Electronic energy + Delta-G solvation = -15760.834833 eV Core-core repulsion = 13096.228316 eV Total energy + Delta-G solvation = -2664.606516 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.047 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.95975 -41.70073 -36.43767 -35.60912 -32.55085 -31.83698 -31.32074 -29.00320 -26.26773 -24.34673 -22.48646 -21.83712 -21.48812 -20.34859 -19.43849 -18.94513 -17.39393 -16.54580 -16.31179 -15.69948 -15.32690 -15.12594 -15.05682 -14.48600 -14.27178 -13.99894 -13.52901 -13.26029 -13.12243 -12.76154 -12.67729 -12.51114 -12.02460 -11.78117 -11.40929 -10.58476 -10.56006 -10.45897 -9.59316 -8.94542 -8.74034 -8.33277 -6.36314 -0.15556 0.58122 1.17448 1.21587 1.40776 1.57370 1.62684 1.85460 1.99997 2.15865 2.28069 2.71949 2.97767 3.21233 4.05033 4.23485 4.31425 4.38784 4.72255 4.84653 4.93743 5.10484 5.12844 5.23308 5.38005 5.62509 5.72860 5.74450 5.97354 6.35672 6.52894 6.67082 6.78540 7.33347 7.63080 8.14802 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.042443 B = 0.005119 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.548989 B = 5468.201231 C = 6114.680343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.024 3.976 3 Si 1.014 2.986 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.250 1.250 7 C -0.455 4.455 8 H 0.112 0.888 9 C 0.190 3.810 10 C -0.180 4.180 11 N -0.457 5.457 12 C 0.101 3.899 13 C -0.074 4.074 14 C -0.132 4.132 15 C 0.031 3.969 16 N -0.549 5.549 17 H 0.432 0.568 18 C 0.064 3.936 19 C -0.192 4.192 20 C -0.234 4.234 21 S 0.108 5.892 22 N -0.576 5.576 23 H 0.423 0.577 24 H 0.301 0.699 25 H 0.166 0.834 26 H 0.134 0.866 27 H 0.227 0.773 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -6.208 -0.725 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.189 4.189 3 Si 0.833 3.167 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.174 1.174 7 C -0.490 4.490 8 H 0.130 0.870 9 C 0.070 3.930 10 C -0.335 4.335 11 N -0.177 5.177 12 C -0.145 4.145 13 C -0.192 4.192 14 C -0.166 4.166 15 C -0.084 4.084 16 N -0.151 5.151 17 H 0.272 0.728 18 C -0.069 4.069 19 C -0.221 4.221 20 C -0.356 4.356 21 S 0.368 5.632 22 N -0.194 5.194 23 H 0.269 0.731 24 H 0.113 0.887 25 H 0.183 0.817 26 H 0.152 0.848 27 H 0.243 0.757 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.124 -5.692 -0.666 11.633 hybrid contribution 0.767 0.064 -0.090 0.775 sum -9.357 -5.628 -0.755 10.945 Atomic orbital electron populations 1.69024 1.09342 1.32069 1.38290 1.27088 0.95729 1.05690 0.90355 0.84669 0.78813 0.73862 0.79309 1.18826 1.19260 1.17356 1.19211 0.96530 0.88647 1.44612 0.87034 1.19589 0.81979 0.96059 0.95396 1.22650 0.97779 0.88721 1.24368 1.69406 0.97594 1.34764 1.15895 1.18613 0.92200 0.81812 1.21902 1.20221 0.93377 0.95951 1.09692 1.18971 0.93938 0.93953 1.09735 1.17903 0.91387 0.87491 1.11575 1.41947 1.05223 1.07267 1.60700 0.72826 1.22553 0.85545 0.95981 1.02774 1.20440 0.93840 0.94296 1.13504 1.23247 0.99754 0.95369 1.17190 1.83576 0.94541 1.06913 1.78210 1.43985 1.08211 1.07228 1.59984 0.73052 0.88739 0.81706 0.84792 0.75698 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -41.94 10.80 21.83 0.24 -41.71 15 2 C 0.02 1.14 5.49 85.23 0.47 1.61 15 3 Si 1.01 35.59 29.57 68.60 2.03 37.62 15 4 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 5 H -0.27 -9.01 7.11 99.48 0.71 -8.31 15 6 H -0.25 -8.39 7.11 99.48 0.71 -7.69 15 7 C -0.46 -23.30 9.33 23.03 0.21 -23.09 15 8 H 0.11 5.26 7.85 -2.91 -0.02 5.23 15 9 C 0.19 10.47 6.74 38.88 0.26 10.73 15 10 C -0.18 -9.67 11.93 85.08 1.01 -8.65 15 11 N -0.46 -24.96 11.03 -190.54 -2.10 -27.06 15 12 C 0.10 5.42 7.68 134.26 1.03 6.45 15 13 C -0.07 -3.44 6.22 22.69 0.14 -3.30 15 14 C -0.13 -5.45 10.00 21.95 0.22 -5.23 15 15 C 0.03 1.08 7.67 38.05 0.29 1.37 15 16 N -0.55 -12.67 6.21 -188.14 -1.17 -13.84 15 17 H 0.43 6.85 8.96 -92.71 -0.83 6.01 15 18 C 0.06 1.20 11.86 83.18 0.99 2.19 15 19 C -0.19 -4.93 10.84 22.25 0.24 -4.69 15 20 C -0.23 -8.23 7.31 23.10 0.17 -8.06 15 21 S 0.11 4.37 23.13 -56.49 -1.31 3.06 15 22 N -0.58 -31.48 5.85 -184.12 -1.08 -32.56 15 23 H 0.42 22.69 6.41 -92.71 -0.59 22.10 15 24 H 0.30 13.20 8.30 -92.70 -0.77 12.43 15 25 H 0.17 7.88 8.06 -2.91 -0.02 7.86 15 26 H 0.13 5.48 8.06 -2.91 -0.02 5.46 15 27 H 0.23 1.63 8.06 -2.91 -0.02 1.60 15 28 H 0.16 3.30 8.06 -2.91 -0.02 3.28 15 Total: -1.00 -66.97 266.72 1.46 -65.51 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.19 Total: 39.65 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 5.04 Total: -30.67 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -4.11 Total: -115.17 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.31 Total: 3.06 kcal Total: -66.97 1.46 -65.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076066430.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.420 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds