Wall clock time and date at job start Mon Mar 30 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30945 * 1 3 3 Si 1.86800 * 120.00281 * 2 1 4 4 H 1.48500 * 109.46766 * 239.99337 * 3 2 1 5 5 H 1.48493 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47380 * 119.99620 * 3 2 1 7 7 C 1.39932 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.39719 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.40020 * 126.91274 * 359.96074 * 9 7 2 11 11 N 1.32285 * 108.03021 * 180.02562 * 10 9 7 12 12 C 1.32530 * 110.03993 * 359.74853 * 11 10 9 13 13 C 1.46190 * 125.46851 * 180.27470 * 12 11 10 14 14 C 1.35777 * 124.90213 * 359.88127 * 13 12 11 15 15 C 1.39750 * 114.93814 * 179.79232 * 14 13 12 16 16 C 1.48047 * 140.82664 * 180.08832 * 15 14 13 17 17 C 1.33867 * 106.87950 * 180.37843 * 16 15 14 18 18 N 1.36888 * 109.53908 * 0.02562 * 17 16 15 19 19 H 0.97002 * 125.05839 * 180.02562 * 18 17 16 20 20 C 1.37404 * 109.87524 * 359.97438 * 18 17 16 21 21 S 1.75567 * 124.89375 * 180.17982 * 13 12 11 22 22 N 1.37180 * 109.05640 * 0.41021 * 12 11 10 23 23 H 0.97001 * 126.65151 * 179.86975 * 22 12 11 24 24 H 0.97001 * 119.99790 * 0.02562 * 1 2 3 25 25 H 1.07992 * 125.98694 * 0.02562 * 10 9 7 26 26 H 1.08008 * 122.52790 * 359.97438 * 14 13 12 27 27 H 1.08005 * 126.55904 * 0.38410 * 16 15 14 28 28 H 1.07998 * 125.22591 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 3.0974 1.6962 -1.2124 5 1 1.2786 2.7464 -0.0006 6 1 3.0972 1.6964 1.2125 7 6 2.0091 -1.2119 0.0005 8 1 3.0891 -1.2119 0.0010 9 6 1.3105 -2.4219 0.0005 10 6 -0.0795 -2.5904 0.0008 11 7 -0.3346 -3.8884 0.0013 12 6 0.7995 -4.5741 -0.0041 13 6 0.9093 -6.0318 -0.0111 14 6 -0.1427 -6.8902 -0.0107 15 6 0.2018 -8.2445 -0.0227 16 6 -0.4215 -9.5874 -0.0300 17 6 0.5768 -10.4793 -0.0332 18 7 1.7777 -9.8223 -0.0280 19 1 2.6476 -10.2515 -0.0294 20 6 1.5673 -8.4645 -0.0218 21 16 2.4207 -6.9251 -0.0137 22 7 1.8536 -3.6963 0.0009 23 1 2.7966 -3.9238 0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 -0.8146 -1.7993 0.0007 26 1 -1.1684 -6.5518 -0.0046 27 1 -1.4793 -9.8056 -0.0324 28 1 0.4535 -11.5522 -0.0382 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076066437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:20 Heat of formation + Delta-G solvation = 111.156840 kcal Electronic energy + Delta-G solvation = -15555.881171 eV Core-core repulsion = 12892.456055 eV Total energy + Delta-G solvation = -2663.425116 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.047 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48579 -39.74244 -34.98906 -33.77765 -31.03060 -30.03812 -29.18617 -27.36527 -24.61389 -22.65787 -20.90834 -20.15011 -19.62507 -18.86492 -18.29612 -17.17083 -15.82842 -15.05059 -14.66736 -14.31813 -13.95336 -13.43624 -13.33312 -13.05804 -12.81612 -12.14461 -12.00958 -11.44632 -11.36576 -11.11988 -11.08653 -10.90591 -10.42415 -10.41680 -9.57550 -9.06817 -8.61342 -8.40819 -7.97260 -7.36515 -6.84912 -6.68297 -4.35203 1.50775 1.55512 2.40412 2.41317 2.89120 2.99276 3.01835 3.39694 3.58913 3.78194 3.87191 4.50657 4.76139 5.00536 5.25357 5.39453 5.65232 5.91134 5.98207 6.32920 6.67197 6.86712 6.87621 6.98575 7.05634 7.17196 7.44450 7.50068 7.61659 7.80515 8.26807 8.63801 8.80864 9.03835 9.75619 10.08589 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.062689 B = 0.004323 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.545023 B = 6475.571793 C = 6912.251890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.932 3.068 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.434 4.434 8 H 0.076 0.924 9 C 0.202 3.798 10 C -0.109 4.109 11 N -0.438 5.438 12 C 0.105 3.895 13 C -0.044 4.044 14 C -0.122 4.122 15 C -0.118 4.118 16 C -0.173 4.173 17 C 0.020 3.980 18 N -0.553 5.553 19 H 0.411 0.589 20 C -0.062 4.062 21 S 0.116 5.884 22 N -0.614 5.614 23 H 0.397 0.603 24 H 0.285 0.715 25 H 0.192 0.808 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -11.795 -0.050 12.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.147 4.147 3 Si 0.757 3.243 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.470 4.470 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.266 4.266 11 N -0.158 5.158 12 C -0.140 4.140 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.131 4.131 16 C -0.201 4.201 17 C -0.110 4.110 18 N -0.156 5.156 19 H 0.246 0.754 20 C -0.285 4.285 21 S 0.371 5.629 22 N -0.227 5.227 23 H 0.232 0.768 24 H 0.096 0.904 25 H 0.209 0.791 26 H 0.159 0.841 27 H 0.161 0.839 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.835 -11.753 -0.039 12.709 hybrid contribution 0.669 0.325 -0.007 0.744 sum 5.504 -11.428 -0.045 12.684 Atomic orbital electron populations 1.69605 1.07425 1.29411 1.34992 1.25775 0.94996 1.01273 0.92615 0.85964 0.79540 0.79053 0.79790 1.18972 1.19980 1.18969 1.18415 0.94352 0.88523 1.45679 0.90530 1.19211 0.93616 0.82708 0.95790 1.23626 0.94057 0.91063 1.17846 1.69649 1.25653 1.06494 1.13985 1.18910 0.83846 0.86959 1.24254 1.20991 0.93769 0.92417 1.09096 1.19409 0.99564 0.88828 1.07489 1.19266 0.91105 0.93589 1.09135 1.21590 0.98274 0.89277 1.10932 1.21574 0.83504 0.97521 1.08363 1.41009 1.08080 1.02442 1.64065 0.75359 1.23237 0.98429 0.88939 1.17902 1.83414 1.07208 0.91051 1.81208 1.43166 1.07193 1.06721 1.65595 0.76837 0.90366 0.79127 0.84062 0.83930 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.48 10.31 55.55 0.57 -18.91 15 2 C 0.07 1.73 5.50 -17.30 -0.10 1.64 15 3 Si 0.93 17.74 29.56 -169.99 -5.03 12.72 15 4 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 15 6 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 7 C -0.43 -10.96 9.43 -38.39 -0.36 -11.32 15 8 H 0.08 1.79 7.85 -52.49 -0.41 1.38 15 9 C 0.20 5.35 6.95 -83.61 -0.58 4.77 15 10 C -0.11 -3.04 10.84 -16.69 -0.18 -3.22 15 11 N -0.44 -11.91 11.09 -10.39 -0.12 -12.03 15 12 C 0.10 2.60 7.90 -153.80 -1.21 1.39 15 13 C -0.04 -0.96 6.37 -37.27 -0.24 -1.19 15 14 C -0.12 -2.52 10.09 -39.90 -0.40 -2.92 15 15 C -0.12 -2.13 6.81 -105.28 -0.72 -2.85 15 16 C -0.17 -2.48 11.13 -37.10 -0.41 -2.89 15 17 C 0.02 0.23 11.83 -16.83 -0.20 0.03 15 18 N -0.55 -6.89 6.06 -11.15 -0.07 -6.96 15 19 H 0.41 3.66 8.96 -40.82 -0.37 3.30 15 20 C -0.06 -1.02 8.43 -15.03 -0.13 -1.15 15 21 S 0.12 1.99 23.24 -107.50 -2.50 -0.50 15 22 N -0.61 -14.70 6.32 -8.38 -0.05 -14.76 15 23 H 0.40 8.21 8.96 -40.82 -0.37 7.85 15 24 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 25 H 0.19 5.38 5.73 -52.49 -0.30 5.08 15 26 H 0.14 2.96 8.06 -52.48 -0.42 2.54 15 27 H 0.14 1.72 8.06 -52.48 -0.42 1.30 15 28 H 0.17 1.19 8.06 -52.49 -0.42 0.76 15 LS Contribution 267.15 15.07 4.03 4.03 Total: -1.00 -30.25 267.15 -9.54 -39.78 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -1.85 Total: 14.35 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -4.53 Total: -17.72 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.34 Total: -52.66 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.72 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.50 Total: -0.50 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.25 -9.54 -39.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076066437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.942 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds