Wall clock time and date at job start Mon Mar 30 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30945 * 1 3 3 Si 1.86800 * 120.00281 * 2 1 4 4 H 1.48500 * 109.46766 * 239.99337 * 3 2 1 5 5 H 1.48493 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47380 * 119.99620 * 3 2 1 7 7 C 1.39932 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.39719 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.40020 * 126.91274 * 359.96074 * 9 7 2 11 11 N 1.32285 * 108.03021 * 180.02562 * 10 9 7 12 12 C 1.32530 * 110.03993 * 359.74853 * 11 10 9 13 13 C 1.46190 * 125.46851 * 180.27470 * 12 11 10 14 14 C 1.35777 * 124.90213 * 359.88127 * 13 12 11 15 15 C 1.39750 * 114.93814 * 179.79232 * 14 13 12 16 16 C 1.48047 * 140.82664 * 180.08832 * 15 14 13 17 17 C 1.33867 * 106.87950 * 180.37843 * 16 15 14 18 18 N 1.36888 * 109.53908 * 0.02562 * 17 16 15 19 19 H 0.97002 * 125.05839 * 180.02562 * 18 17 16 20 20 C 1.37404 * 109.87524 * 359.97438 * 18 17 16 21 21 S 1.75567 * 124.89375 * 180.17982 * 13 12 11 22 22 N 1.37180 * 109.05640 * 0.41021 * 12 11 10 23 23 H 0.97001 * 126.65151 * 179.86975 * 22 12 11 24 24 H 0.97001 * 119.99790 * 0.02562 * 1 2 3 25 25 H 1.07992 * 125.98694 * 0.02562 * 10 9 7 26 26 H 1.08008 * 122.52790 * 359.97438 * 14 13 12 27 27 H 1.08005 * 126.55904 * 0.38410 * 16 15 14 28 28 H 1.07998 * 125.22591 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2435 1.6177 0.0000 4 1 3.0974 1.6962 -1.2124 5 1 1.2786 2.7464 -0.0006 6 1 3.0972 1.6964 1.2125 7 6 2.0091 -1.2119 0.0005 8 1 3.0891 -1.2119 0.0010 9 6 1.3105 -2.4219 0.0005 10 6 -0.0795 -2.5904 0.0008 11 7 -0.3346 -3.8884 0.0013 12 6 0.7995 -4.5741 -0.0041 13 6 0.9093 -6.0318 -0.0111 14 6 -0.1427 -6.8902 -0.0107 15 6 0.2018 -8.2445 -0.0227 16 6 -0.4215 -9.5874 -0.0300 17 6 0.5768 -10.4793 -0.0332 18 7 1.7777 -9.8223 -0.0280 19 1 2.6476 -10.2515 -0.0294 20 6 1.5673 -8.4645 -0.0218 21 16 2.4207 -6.9251 -0.0137 22 7 1.8536 -3.6963 0.0009 23 1 2.7966 -3.9238 0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 -0.8146 -1.7993 0.0007 26 1 -1.1684 -6.5518 -0.0046 27 1 -1.4793 -9.8056 -0.0324 28 1 0.4535 -11.5522 -0.0382 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076066437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:20 Heat of formation + Delta-G solvation = 91.486827 kcal Electronic energy + Delta-G solvation = -15556.734127 eV Core-core repulsion = 12892.456055 eV Total energy + Delta-G solvation = -2664.278071 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.047 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.76596 -41.57152 -36.49590 -35.55828 -32.98982 -31.37223 -30.70295 -28.96544 -26.33566 -24.25539 -22.37529 -21.93103 -21.06870 -20.42704 -19.69065 -18.84986 -17.67294 -16.49926 -16.15107 -15.64409 -15.30672 -15.12935 -15.08017 -14.55835 -14.12025 -13.99069 -13.39501 -13.00669 -12.94662 -12.72294 -12.68720 -12.54967 -11.98717 -11.86813 -11.29441 -10.55562 -10.39878 -10.27302 -9.57280 -8.65623 -8.62496 -8.41414 -6.29012 0.01360 0.15195 0.92721 1.22532 1.39181 1.42972 1.57770 1.85382 2.18488 2.26934 2.57961 2.70400 2.85870 3.30105 3.86560 4.20117 4.22836 4.57507 4.81799 4.94495 5.01349 5.03947 5.29140 5.45103 5.57922 5.58739 5.76060 5.86514 5.92209 6.39280 6.68406 6.70982 6.83487 7.21167 7.79417 8.33865 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.062689 B = 0.004323 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.545023 B = 6475.571793 C = 6912.251890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.464 4.464 8 H 0.089 0.911 9 C 0.178 3.822 10 C -0.159 4.159 11 N -0.477 5.477 12 C 0.123 3.877 13 C -0.107 4.107 14 C -0.101 4.101 15 C -0.164 4.164 16 C -0.196 4.196 17 C 0.054 3.946 18 N -0.536 5.536 19 H 0.432 0.568 20 C -0.057 4.057 21 S 0.168 5.832 22 N -0.607 5.607 23 H 0.410 0.590 24 H 0.292 0.708 25 H 0.176 0.824 26 H 0.123 0.877 27 H 0.160 0.840 28 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 -14.790 -0.067 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.188 4.188 3 Si 0.831 3.169 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.498 4.498 8 H 0.107 0.893 9 C 0.064 3.936 10 C -0.311 4.311 11 N -0.197 5.197 12 C -0.126 4.126 13 C -0.225 4.225 14 C -0.133 4.133 15 C -0.177 4.177 16 C -0.223 4.223 17 C -0.075 4.075 18 N -0.140 5.140 19 H 0.272 0.728 20 C -0.283 4.283 21 S 0.423 5.577 22 N -0.221 5.221 23 H 0.248 0.752 24 H 0.103 0.897 25 H 0.192 0.808 26 H 0.141 0.859 27 H 0.178 0.822 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.860 -14.733 -0.056 16.252 hybrid contribution -0.001 0.738 -0.002 0.738 sum 6.858 -13.996 -0.058 15.586 Atomic orbital electron populations 1.69706 1.09126 1.30730 1.35227 1.26876 0.95783 1.04724 0.91402 0.84796 0.78084 0.73965 0.80032 1.18222 1.19136 1.18216 1.18801 0.95091 0.88858 1.47086 0.89257 1.19447 0.93453 0.83924 0.96814 1.23430 0.94823 0.91222 1.21651 1.69563 1.27199 1.06607 1.16294 1.19524 0.83461 0.88552 1.21108 1.21080 0.97009 0.91228 1.13155 1.19600 0.98747 0.90595 1.04370 1.19530 0.92754 0.93776 1.11660 1.21972 1.00206 0.87781 1.12292 1.22433 0.81791 0.99507 1.03794 1.41208 1.09907 1.00724 1.62202 0.72796 1.23373 0.97828 0.90652 1.16428 1.83066 1.03777 0.90397 1.80435 1.43101 1.07819 1.05965 1.65242 0.75236 0.89676 0.80770 0.85886 0.82226 0.75816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.74 10.31 21.83 0.23 -42.52 15 2 C 0.03 1.37 5.50 85.24 0.47 1.83 15 3 Si 1.01 36.60 29.56 68.60 2.03 38.63 15 4 H -0.26 -8.97 7.11 99.48 0.71 -8.27 15 5 H -0.27 -9.19 7.11 99.48 0.71 -8.49 15 6 H -0.26 -8.97 7.11 99.48 0.71 -8.26 15 7 C -0.46 -24.28 9.43 23.04 0.22 -24.06 15 8 H 0.09 4.26 7.85 -2.91 -0.02 4.23 15 9 C 0.18 9.99 6.95 38.87 0.27 10.26 15 10 C -0.16 -9.49 10.84 85.06 0.92 -8.57 15 11 N -0.48 -27.69 11.09 -186.80 -2.07 -29.76 15 12 C 0.12 6.36 7.90 135.49 1.07 7.43 15 13 C -0.11 -4.66 6.37 23.77 0.15 -4.51 15 14 C -0.10 -4.21 10.09 22.06 0.22 -3.99 15 15 C -0.16 -5.65 6.81 -20.29 -0.14 -5.79 15 16 C -0.20 -4.90 11.13 23.88 0.27 -4.63 15 17 C 0.05 0.92 11.83 82.91 0.98 1.90 15 18 N -0.54 -10.57 6.06 -189.18 -1.15 -11.72 15 19 H 0.43 5.16 8.96 -92.71 -0.83 4.33 15 20 C -0.06 -1.72 8.43 83.84 0.71 -1.01 15 21 S 0.17 5.50 23.24 -56.49 -1.31 4.19 15 22 N -0.61 -30.25 6.32 -180.43 -1.14 -31.39 15 23 H 0.41 17.36 8.96 -92.71 -0.83 16.53 15 24 H 0.29 13.62 8.30 -92.71 -0.77 12.85 15 25 H 0.18 10.76 5.73 -2.91 -0.02 10.74 15 26 H 0.12 5.43 8.06 -2.91 -0.02 5.41 15 27 H 0.16 3.33 8.06 -2.91 -0.02 3.30 15 28 H 0.23 1.33 8.06 -2.91 -0.02 1.31 15 Total: -1.00 -71.31 267.15 1.30 -70.01 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.42 Total: 33.70 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 5.14 Total: -31.14 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.13 Total: -115.39 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Atomic # 16 Polarization: 5.50 SS G_CDS: -1.31 Total: 4.19 kcal Total: -71.31 1.30 -70.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076066437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.496 kcal (2) G-P(sol) polarization free energy of solvation -71.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds