Wall clock time and date at job start Mon Mar 30 2020 06:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30961 * 1 3 3 Si 1.86792 * 119.99970 * 2 1 4 4 H 1.48505 * 109.47346 * 265.84730 * 3 2 1 5 5 H 1.48507 * 109.47338 * 25.84690 * 3 2 1 6 6 H 1.48503 * 109.47177 * 145.84636 * 3 2 1 7 7 C 1.39929 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00196 * 349.36801 * 7 2 1 9 9 C 1.39801 * 119.99885 * 169.36933 * 7 2 1 10 10 C 1.39899 * 126.93579 * 163.03574 * 9 7 2 11 11 N 1.32462 * 107.95655 * 179.80920 * 10 9 7 12 12 C 1.32296 * 110.02872 * 0.38318 * 11 10 9 13 13 C 1.46968 * 125.43345 * 179.88353 * 12 11 10 14 14 C 1.37712 * 126.88122 * 179.71367 * 13 12 11 15 15 N 1.35434 * 108.96557 * 179.97438 * 14 13 12 16 16 H 0.97006 * 124.83104 * 180.02562 * 15 14 13 17 17 C 1.39669 * 110.33659 * 359.97438 * 15 14 13 18 18 C 1.40220 * 139.57913 * 179.97438 * 17 15 14 19 19 C 1.32622 * 115.65889 * 180.02562 * 18 17 15 20 20 S 1.75643 * 110.31918 * 0.02562 * 19 18 17 21 21 C 1.37258 * 107.50113 * 359.97438 * 17 15 14 22 22 N 1.36900 * 109.13754 * 359.61007 * 12 11 10 23 23 H 0.96995 * 126.62440 * 180.24960 * 22 12 11 24 24 H 0.96996 * 119.99654 * 0.02562 * 1 2 3 25 25 H 1.08001 * 126.01487 * 0.03853 * 10 9 7 26 26 H 1.08003 * 125.51658 * 359.95713 * 14 13 12 27 27 H 1.07999 * 122.16949 * 0.04837 * 18 17 15 28 28 H 1.08000 * 124.84272 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 2.5789 1.9957 -1.3964 5 1 1.3999 2.6764 0.6104 6 1 3.4945 1.4671 0.7860 7 6 2.0092 -1.2118 0.0005 8 1 1.4831 -2.1391 0.1735 9 6 3.3892 -1.2223 -0.2228 10 6 4.2792 -2.2634 0.0627 11 7 5.4919 -1.8758 -0.3030 12 6 5.4456 -0.6499 -0.7983 13 6 6.5983 0.1090 -1.3035 14 6 6.5837 1.3817 -1.8294 15 7 7.8453 1.7274 -2.1804 16 1 8.0976 2.5773 -2.5743 17 6 8.7314 0.6867 -1.8935 18 6 10.0980 0.3897 -1.9951 19 6 10.4594 -0.8087 -1.5568 20 16 9.0601 -1.6881 -0.9620 21 6 8.0008 -0.3386 -1.3467 22 7 4.1518 -0.2033 -0.7709 23 1 3.8309 0.6596 -1.0763 24 1 -0.4849 0.8400 -0.0004 25 1 4.0220 -3.2166 0.5003 26 1 5.7079 2.0034 -1.9437 27 1 10.8101 1.0915 -2.4035 28 1 11.4700 -1.1896 -1.5645 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076066439.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:28 Heat of formation + Delta-G solvation = 99.828965 kcal Electronic energy + Delta-G solvation = -16023.606801 eV Core-core repulsion = 13359.690472 eV Total energy + Delta-G solvation = -2663.916329 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.047 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.18091 -41.47416 -36.21337 -35.66678 -33.21205 -32.63055 -30.53771 -28.70101 -26.54334 -23.99608 -23.29063 -21.71778 -21.16034 -20.75984 -19.86485 -18.77159 -17.52926 -16.42862 -16.28660 -15.84626 -15.81200 -15.26623 -15.14135 -14.84147 -14.32037 -13.98603 -13.71773 -13.24176 -13.15366 -12.90420 -12.64701 -12.53725 -11.99382 -11.51375 -11.48430 -10.74446 -10.57636 -10.49040 -9.39474 -8.97360 -8.96426 -8.32455 -6.35215 0.23637 0.74597 0.77197 0.97957 1.14970 1.26405 1.42457 1.72109 1.91647 1.92845 2.17658 2.45538 2.78207 3.12809 3.80379 3.94539 4.14167 4.38462 4.51055 4.70855 4.77724 4.92895 5.07385 5.17748 5.27356 5.35649 5.56588 5.84055 5.88674 6.15090 6.42757 6.64820 6.67926 6.96424 7.63210 8.14013 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.035673 B = 0.006180 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.727155 B = 4529.348691 C = 5240.907679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.041 3.959 3 Si 0.929 3.071 4 H -0.231 1.231 5 H -0.256 1.256 6 H -0.257 1.257 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.173 3.827 10 C -0.180 4.180 11 N -0.469 5.469 12 C 0.163 3.837 13 C -0.078 4.078 14 C 0.046 3.954 15 N -0.533 5.533 16 H 0.437 0.563 17 C 0.035 3.965 18 C -0.112 4.112 19 C -0.196 4.196 20 S 0.106 5.894 21 C -0.217 4.217 22 N -0.605 5.605 23 H 0.400 0.600 24 H 0.297 0.703 25 H 0.155 0.845 26 H 0.196 0.804 27 H 0.175 0.825 28 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.137 9.137 -5.743 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.174 4.174 3 Si 0.751 3.249 4 H -0.156 1.156 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.098 0.902 9 C 0.058 3.942 10 C -0.329 4.329 11 N -0.188 5.188 12 C -0.089 4.089 13 C -0.092 4.092 14 C -0.090 4.090 15 N -0.135 5.135 16 H 0.278 0.722 17 C -0.081 4.081 18 C -0.145 4.145 19 C -0.331 4.331 20 S 0.366 5.634 21 C -0.339 4.339 22 N -0.224 5.224 23 H 0.243 0.757 24 H 0.108 0.892 25 H 0.172 0.828 26 H 0.213 0.787 27 H 0.192 0.808 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 17.505 7.381 -5.086 19.666 hybrid contribution -1.320 2.629 -0.630 3.009 sum 16.185 10.010 -5.716 19.870 Atomic orbital electron populations 1.69677 1.08510 1.31512 1.37417 1.26750 0.95851 1.03598 0.91225 0.86110 0.79794 0.77768 0.81212 1.15607 1.18110 1.18138 1.18431 0.89150 0.96224 1.45664 0.90173 1.19124 0.91990 0.87975 0.95109 1.22319 0.88245 1.02016 1.20335 1.69466 1.25359 1.09798 1.14151 1.20105 0.83301 0.92606 1.12908 1.17448 0.87484 0.94381 1.09845 1.22118 0.88678 0.95226 1.02948 1.41199 1.04203 1.15509 1.52614 0.72158 1.18667 0.92663 0.89234 1.07544 1.19163 0.91042 0.98710 1.05550 1.25665 1.03312 0.97822 1.06324 1.84299 0.97009 1.16426 1.65663 1.23731 0.96888 1.00200 1.13064 1.43772 1.08149 1.16318 1.54166 0.75713 0.89246 0.82806 0.78680 0.80803 0.77835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.27 13.94 21.83 0.30 -43.97 15 2 C 0.04 2.11 5.52 85.23 0.47 2.58 15 3 Si 0.93 37.28 24.67 68.60 1.69 38.97 15 4 H -0.23 -7.94 6.82 99.48 0.68 -7.26 15 5 H -0.26 -9.53 7.11 99.48 0.71 -8.83 15 6 H -0.26 -10.88 6.73 99.48 0.67 -10.21 15 7 C -0.46 -25.54 9.89 23.06 0.23 -25.32 15 8 H 0.08 4.75 8.06 -2.91 -0.02 4.73 15 9 C 0.17 9.22 6.26 38.86 0.24 9.47 15 10 C -0.18 -9.66 11.94 85.00 1.01 -8.64 15 11 N -0.47 -24.67 11.19 -186.42 -2.09 -26.75 15 12 C 0.16 7.85 7.95 135.87 1.08 8.94 15 13 C -0.08 -3.13 6.33 -18.74 -0.12 -3.24 15 14 C 0.05 1.35 11.90 84.01 1.00 2.35 15 15 N -0.53 -12.07 6.06 -186.34 -1.13 -13.20 15 16 H 0.44 5.68 8.96 -92.70 -0.83 4.85 15 17 C 0.03 0.95 7.68 38.14 0.29 1.24 15 18 C -0.11 -2.32 10.17 21.59 0.22 -2.10 15 19 C -0.20 -4.16 11.14 66.66 0.74 -3.41 15 20 S 0.11 3.38 23.31 -56.49 -1.32 2.06 15 21 C -0.22 -7.87 7.51 24.42 0.18 -7.69 15 22 N -0.60 -28.94 4.78 -180.08 -0.86 -29.80 15 23 H 0.40 16.88 4.33 -92.71 -0.40 16.48 15 24 H 0.30 13.85 8.30 -92.71 -0.77 13.08 15 25 H 0.15 7.77 8.06 -2.91 -0.02 7.75 15 26 H 0.20 4.43 8.06 -2.91 -0.02 4.41 15 27 H 0.17 2.15 8.06 -2.91 -0.02 2.12 15 28 H 0.20 2.63 8.06 -2.91 -0.02 2.61 15 Total: -1.00 -70.70 262.77 1.89 -68.81 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.06 Total: 29.71 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 5.36 Total: -25.83 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -3.77 Total: -113.72 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 1.69 Total: 38.97 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.32 Total: 2.06 kcal Total: -70.70 1.89 -68.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076066439.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.636 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds