Wall clock time and date at job start Mon Mar 30 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30378 * 1 3 3 Si 1.86806 * 119.99615 * 2 1 4 4 H 1.48500 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47241 * 299.99940 * 3 2 1 6 6 H 1.48500 * 109.46932 * 60.00466 * 3 2 1 7 7 C 1.40713 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.40031 * 119.99928 * 0.02562 * 7 2 1 10 10 N 1.32448 * 126.55189 * 359.97438 * 9 7 2 11 11 C 1.30854 * 120.23699 * 179.70070 * 10 9 7 12 12 O 1.22159 * 122.57230 * 180.31396 * 11 10 9 13 13 C 1.47394 * 114.85308 * 0.52722 * 11 10 9 14 14 C 1.37784 * 128.15983 * 179.81429 * 13 11 10 15 15 C 1.46485 * 119.99752 * 187.19557 * 14 13 11 16 16 C 1.40288 * 120.21408 * 19.35010 * 15 14 13 17 17 C 1.37737 * 119.78850 * 180.02562 * 16 15 14 18 18 C 1.38536 * 120.21364 * 0.02562 * 17 16 15 19 19 C 1.38534 * 120.41967 * 359.97438 * 18 17 16 20 20 C 1.37751 * 120.21104 * 359.97438 * 19 18 17 21 21 S 1.77289 * 126.54754 * 179.97438 * 9 7 2 22 22 H 0.97001 * 119.99797 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.00100 * 7.18873 * 14 13 11 24 24 H 1.08005 * 120.10228 * 0.02562 * 16 15 14 25 25 H 1.08006 * 119.89873 * 180.02562 * 17 16 15 26 26 H 1.07997 * 119.79165 * 179.70411 * 18 17 16 27 27 H 1.08005 * 119.89590 * 179.97438 * 19 18 17 28 28 H 1.08002 * 120.10834 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3038 0.0000 0.0000 3 14 2.2377 1.6178 0.0000 4 1 3.6977 1.3466 0.0006 5 1 1.8789 2.3965 -1.2124 6 1 1.8790 2.3964 1.2126 7 6 2.0074 -1.2186 0.0005 8 1 3.0873 -1.2185 0.0001 9 6 1.3073 -2.4313 0.0005 10 7 -0.0086 -2.5825 0.0005 11 6 -0.5342 -3.7808 -0.0054 12 8 -1.7411 -3.9695 -0.0113 13 6 0.4417 -4.8853 0.0006 14 6 0.1935 -6.2406 0.0002 15 6 1.2987 -7.1877 0.1657 16 6 2.5158 -6.7625 0.7187 17 6 3.5494 -7.6603 0.8698 18 6 3.3902 -8.9793 0.4772 19 6 2.1921 -9.4085 -0.0699 20 6 1.1466 -8.5257 -0.2280 21 16 2.0129 -4.0577 0.0005 22 1 -0.4850 0.8401 0.0004 23 1 -0.8160 -6.6047 -0.1221 24 1 2.6420 -5.7345 1.0250 25 1 4.4871 -7.3350 1.2958 26 1 4.2068 -9.6763 0.5944 27 1 2.0773 -10.4387 -0.3735 28 1 0.2131 -8.8622 -0.6543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082295322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:35 Heat of formation + Delta-G solvation = 20.543062 kcal Electronic energy + Delta-G solvation = -15597.849166 eV Core-core repulsion = 12898.201991 eV Total energy + Delta-G solvation = -2699.647175 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.84886 -38.00749 -35.23893 -33.40091 -33.05094 -30.78467 -29.09891 -28.02213 -23.79466 -22.51012 -22.30649 -20.58203 -18.95580 -17.21373 -16.79351 -16.30234 -15.51437 -14.91586 -14.84655 -13.98988 -13.81619 -13.57088 -13.19265 -13.14992 -12.63838 -12.53403 -11.82392 -11.76375 -11.59269 -11.21633 -10.83542 -10.71360 -10.59716 -10.41729 -10.10329 -9.33157 -8.78125 -8.57507 -8.27452 -7.71441 -7.03286 -6.86634 -5.71648 0.82996 1.62184 2.01881 2.37442 2.63613 2.72869 2.81100 3.01636 3.13662 3.45488 4.09020 4.26398 4.99897 5.07992 5.12345 5.28227 5.35983 5.57713 5.67907 5.81793 6.11324 6.11992 6.27949 6.36437 6.43591 6.50415 6.67809 6.79520 7.00291 7.20444 7.37580 7.51273 7.82307 9.33223 9.43787 9.92334 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.005461 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.861525 B = 5126.321118 C = 5884.733220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.645 5.645 2 C 0.048 3.952 3 Si 0.935 3.065 4 H -0.250 1.250 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.305 4.305 8 H 0.114 0.886 9 C 0.266 3.734 10 N -0.622 5.622 11 C 0.510 3.490 12 O -0.553 6.553 13 C -0.173 4.173 14 C -0.055 4.055 15 C -0.050 4.050 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.127 4.127 19 C -0.126 4.126 20 C -0.109 4.109 21 S -0.168 6.168 22 H 0.297 0.703 23 H 0.141 0.859 24 H 0.145 0.855 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.558 -6.431 0.544 10.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.263 5.263 2 C -0.189 4.189 3 Si 0.755 3.245 4 H -0.173 1.173 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.340 4.340 8 H 0.132 0.868 9 C 0.024 3.976 10 N -0.371 5.371 11 C 0.289 3.711 12 O -0.438 6.438 13 C -0.294 4.294 14 C -0.085 4.085 15 C -0.051 4.051 16 C -0.132 4.132 17 C -0.135 4.135 18 C -0.146 4.146 19 C -0.144 4.144 20 C -0.128 4.128 21 S 0.080 5.920 22 H 0.110 0.890 23 H 0.158 0.842 24 H 0.161 0.839 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.375 -6.225 0.530 10.449 hybrid contribution -0.443 0.304 -0.017 0.538 sum 7.932 -5.921 0.513 9.911 Atomic orbital electron populations 1.69890 1.08057 1.30992 1.17365 1.26572 0.95450 1.02235 0.94619 0.85793 0.80676 0.78344 0.79670 1.17279 1.18693 1.18692 1.19872 0.95776 0.87704 1.30656 0.86845 1.24485 0.89456 0.92671 0.90953 1.67256 1.09334 1.19678 1.40844 1.19640 0.89632 0.82897 0.78915 1.90683 1.14815 1.85921 1.52377 1.27348 0.97871 0.99175 1.04988 1.21827 0.97657 0.89094 0.99925 1.19190 0.93761 0.93433 0.98671 1.22074 0.92355 1.01032 0.97703 1.21044 0.98793 0.93347 1.00351 1.21236 0.97457 0.95948 0.99959 1.20980 0.93635 0.99267 1.00478 1.21358 0.99128 0.92502 0.99777 1.84857 1.11114 1.09201 1.86868 0.89043 0.84195 0.83855 0.86099 0.86483 0.86296 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 -15.57 11.94 55.59 0.66 -14.90 15 2 C 0.05 1.03 5.51 -17.23 -0.09 0.93 15 3 Si 0.93 15.09 29.57 -169.99 -5.03 10.06 15 4 H -0.25 -3.83 7.11 56.52 0.40 -3.43 15 5 H -0.26 -4.20 7.11 56.52 0.40 -3.80 15 6 H -0.26 -4.19 7.11 56.52 0.40 -3.79 15 7 C -0.30 -6.94 9.46 -37.98 -0.36 -7.30 15 8 H 0.11 2.23 7.86 -52.49 -0.41 1.82 15 9 C 0.27 6.82 7.24 -16.61 -0.12 6.70 15 10 N -0.62 -18.03 8.62 -12.39 -0.11 -18.14 15 11 C 0.51 14.65 8.02 -14.24 -0.11 14.54 15 12 O -0.55 -17.13 17.99 4.77 0.09 -17.04 15 13 C -0.17 -4.18 6.46 -36.02 -0.23 -4.41 15 14 C -0.05 -1.12 9.94 -36.43 -0.36 -1.49 15 15 C -0.05 -0.88 5.82 -105.03 -0.61 -1.49 15 16 C -0.11 -1.93 8.71 -38.99 -0.34 -2.27 15 17 C -0.12 -1.67 10.03 -39.65 -0.40 -2.07 15 18 C -0.13 -1.61 10.05 -39.36 -0.40 -2.00 15 19 C -0.13 -1.59 10.03 -39.65 -0.40 -1.99 15 20 C -0.11 -1.60 9.81 -38.99 -0.38 -1.98 15 21 S -0.17 -3.77 19.06 -107.50 -2.05 -5.82 15 22 H 0.30 6.24 8.29 -40.82 -0.34 5.90 15 23 H 0.14 2.69 8.06 -52.49 -0.42 2.27 15 24 H 0.14 2.69 4.50 -28.11 -0.13 2.56 15 25 H 0.12 1.44 8.06 -52.48 -0.42 1.02 15 26 H 0.12 1.14 8.06 -52.49 -0.42 0.71 15 27 H 0.12 1.17 8.06 -52.48 -0.42 0.74 15 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 LS Contribution 270.48 15.07 4.08 4.08 Total: -1.00 -31.53 270.48 -7.95 -39.48 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -1.79 Total: 5.12 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.81 Total: -2.83 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.56 Total: -33.05 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.09 Total: -17.04 kcal Atomic # 14 Polarization: 15.09 SS G_CDS: -5.03 Total: 10.06 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.05 Total: -5.82 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.53 -7.95 -39.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082295322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.020 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds