Wall clock time and date at job start Mon Mar 30 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30378 * 1 3 3 Si 1.86806 * 119.99615 * 2 1 4 4 H 1.48500 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47241 * 299.99940 * 3 2 1 6 6 H 1.48500 * 109.46932 * 60.00466 * 3 2 1 7 7 C 1.40713 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.40031 * 119.99928 * 0.02562 * 7 2 1 10 10 N 1.32448 * 126.55189 * 359.97438 * 9 7 2 11 11 C 1.30854 * 120.23699 * 179.70070 * 10 9 7 12 12 O 1.22159 * 122.57230 * 180.31396 * 11 10 9 13 13 C 1.47394 * 114.85308 * 0.52722 * 11 10 9 14 14 C 1.37784 * 128.15983 * 179.81429 * 13 11 10 15 15 C 1.46485 * 119.99752 * 187.19557 * 14 13 11 16 16 C 1.40288 * 120.21408 * 19.35010 * 15 14 13 17 17 C 1.37737 * 119.78850 * 180.02562 * 16 15 14 18 18 C 1.38536 * 120.21364 * 0.02562 * 17 16 15 19 19 C 1.38534 * 120.41967 * 359.97438 * 18 17 16 20 20 C 1.37751 * 120.21104 * 359.97438 * 19 18 17 21 21 S 1.77289 * 126.54754 * 179.97438 * 9 7 2 22 22 H 0.97001 * 119.99797 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.00100 * 7.18873 * 14 13 11 24 24 H 1.08005 * 120.10228 * 0.02562 * 16 15 14 25 25 H 1.08006 * 119.89873 * 180.02562 * 17 16 15 26 26 H 1.07997 * 119.79165 * 179.70411 * 18 17 16 27 27 H 1.08005 * 119.89590 * 179.97438 * 19 18 17 28 28 H 1.08002 * 120.10834 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3038 0.0000 0.0000 3 14 2.2377 1.6178 0.0000 4 1 3.6977 1.3466 0.0006 5 1 1.8789 2.3965 -1.2124 6 1 1.8790 2.3964 1.2126 7 6 2.0074 -1.2186 0.0005 8 1 3.0873 -1.2185 0.0001 9 6 1.3073 -2.4313 0.0005 10 7 -0.0086 -2.5825 0.0005 11 6 -0.5342 -3.7808 -0.0054 12 8 -1.7411 -3.9695 -0.0113 13 6 0.4417 -4.8853 0.0006 14 6 0.1935 -6.2406 0.0002 15 6 1.2987 -7.1877 0.1657 16 6 2.5158 -6.7625 0.7187 17 6 3.5494 -7.6603 0.8698 18 6 3.3902 -8.9793 0.4772 19 6 2.1921 -9.4085 -0.0699 20 6 1.1466 -8.5257 -0.2280 21 16 2.0129 -4.0577 0.0005 22 1 -0.4850 0.8401 0.0004 23 1 -0.8160 -6.6047 -0.1221 24 1 2.6420 -5.7345 1.0250 25 1 4.4871 -7.3350 1.2958 26 1 4.2068 -9.6763 0.5944 27 1 2.0773 -10.4387 -0.3735 28 1 0.2131 -8.8622 -0.6543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082295322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:35 Heat of formation + Delta-G solvation = -0.947537 kcal Electronic energy + Delta-G solvation = -15598.781068 eV Core-core repulsion = 12898.201991 eV Total energy + Delta-G solvation = -2700.579077 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.20706 -39.80776 -37.11165 -35.24245 -34.57503 -31.92577 -30.73779 -29.66333 -25.36381 -24.28287 -23.49488 -22.01832 -20.77675 -18.84036 -18.46079 -17.72547 -17.14882 -16.36187 -16.16397 -15.82096 -15.50676 -15.17876 -14.60465 -14.34338 -14.01099 -13.81256 -13.45224 -13.38453 -13.19904 -12.68766 -12.33627 -12.10602 -11.96903 -11.85676 -11.64662 -11.03349 -10.58832 -9.89865 -9.71710 -9.52524 -8.81461 -8.63165 -7.57939 -0.71663 0.43376 0.47139 0.70576 1.20226 1.29306 1.39942 1.60077 1.63817 2.06619 2.50219 2.92830 3.30704 3.43654 3.89839 4.09168 4.11392 4.30854 4.34993 4.53208 4.53528 4.63027 4.83521 4.95646 5.09730 5.18228 5.54797 5.58919 5.60452 5.67945 5.72706 5.99601 6.07668 7.29304 7.78935 8.00813 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.005461 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.861525 B = 5126.321118 C = 5884.733220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.002 3.998 3 Si 1.025 2.975 4 H -0.227 1.227 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.292 4.292 8 H 0.148 0.852 9 C 0.209 3.791 10 N -0.669 5.669 11 C 0.487 3.513 12 O -0.615 6.615 13 C -0.237 4.237 14 C -0.009 4.009 15 C -0.093 4.093 16 C -0.126 4.126 17 C -0.124 4.124 18 C -0.106 4.106 19 C -0.122 4.122 20 C -0.102 4.102 21 S -0.116 6.116 22 H 0.308 0.692 23 H 0.144 0.856 24 H 0.123 0.877 25 H 0.145 0.855 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.311 -7.998 0.502 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.230 4.230 3 Si 0.839 3.161 4 H -0.148 1.148 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.327 4.327 8 H 0.166 0.834 9 C -0.029 4.029 10 N -0.421 5.421 11 C 0.269 3.731 12 O -0.506 6.506 13 C -0.357 4.357 14 C -0.038 4.038 15 C -0.094 4.094 16 C -0.147 4.147 17 C -0.142 4.142 18 C -0.124 4.124 19 C -0.140 4.140 20 C -0.120 4.120 21 S 0.132 5.868 22 H 0.120 0.880 23 H 0.161 0.839 24 H 0.140 0.860 25 H 0.162 0.838 26 H 0.176 0.824 27 H 0.177 0.823 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.187 -7.821 0.489 14.489 hybrid contribution -1.455 0.569 0.014 1.562 sum 10.732 -7.253 0.503 12.963 Atomic orbital electron populations 1.70005 1.10741 1.33031 1.17629 1.28017 0.95996 1.06219 0.92791 0.84543 0.79921 0.72005 0.79675 1.14829 1.18272 1.18241 1.20773 0.97504 0.87630 1.26749 0.83443 1.24993 0.89506 0.95316 0.93058 1.67160 1.11799 1.21297 1.41836 1.19971 0.89712 0.84506 0.78938 1.90585 1.16730 1.86839 1.56465 1.26983 0.97577 0.99461 1.11699 1.22265 0.99072 0.88581 0.93929 1.19196 0.93346 0.94435 1.02375 1.22023 0.93301 1.00740 0.98614 1.21357 0.98730 0.93820 1.00286 1.21785 0.98394 0.95566 0.96642 1.21473 0.92695 1.00695 0.99089 1.21659 1.00780 0.91128 0.98449 1.84262 1.09170 1.05917 1.87448 0.87953 0.83861 0.86016 0.83754 0.82376 0.82320 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -34.93 11.94 21.96 0.26 -34.67 15 2 C 0.00 0.07 5.51 85.51 0.47 0.54 15 3 Si 1.02 29.42 29.57 68.60 2.03 31.45 15 4 H -0.23 -5.65 7.11 99.48 0.71 -4.94 15 5 H -0.26 -7.26 7.11 99.48 0.71 -6.55 15 6 H -0.26 -7.24 7.11 99.48 0.71 -6.53 15 7 C -0.29 -13.39 9.46 23.31 0.22 -13.17 15 8 H 0.15 5.52 7.86 -2.91 -0.02 5.50 15 9 C 0.21 11.22 7.24 85.03 0.62 11.84 15 10 N -0.67 -41.70 8.62 -313.28 -2.70 -44.40 15 11 C 0.49 30.38 8.02 87.25 0.70 31.08 15 12 O -0.62 -41.72 17.99 -5.84 -0.10 -41.82 15 13 C -0.24 -12.18 6.46 24.58 0.16 -12.02 15 14 C -0.01 -0.37 9.94 24.31 0.24 -0.13 15 15 C -0.09 -3.22 5.82 -20.13 -0.12 -3.34 15 16 C -0.13 -4.24 8.71 22.65 0.20 -4.04 15 17 C -0.12 -3.10 10.03 22.22 0.22 -2.88 15 18 C -0.11 -2.08 10.05 22.41 0.23 -1.86 15 19 C -0.12 -2.46 10.03 22.22 0.22 -2.24 15 20 C -0.10 -2.68 9.81 22.66 0.22 -2.46 15 21 S -0.12 -5.38 19.06 -56.49 -1.08 -6.46 15 22 H 0.31 13.43 8.29 -92.71 -0.77 12.66 15 23 H 0.14 5.79 8.06 -2.91 -0.02 5.76 15 24 H 0.12 4.61 4.50 -18.40 -0.08 4.52 15 25 H 0.14 2.88 8.06 -2.91 -0.02 2.85 15 26 H 0.16 1.92 8.06 -2.91 -0.02 1.89 15 27 H 0.16 2.03 8.06 -2.91 -0.02 2.01 15 28 H 0.14 3.13 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -77.20 270.48 2.92 -74.28 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.13 Total: 20.29 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 3.38 Total: 1.33 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.44 Total: -79.07 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.10 Total: -41.82 kcal Atomic # 14 Polarization: 29.42 SS G_CDS: 2.03 Total: 31.45 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -1.08 Total: -6.46 kcal Total: -77.20 2.92 -74.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082295322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.335 kcal (2) G-P(sol) polarization free energy of solvation -77.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds