Wall clock time and date at job start Mon Mar 30 2020 07:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48503 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47190 * 299.99574 * 3 2 1 6 6 H 1.48506 * 109.47384 * 59.99613 * 3 2 1 7 7 C 1.40075 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.40044 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.38583 * 126.25645 * 0.02562 * 9 7 2 11 11 N 1.30674 * 113.55349 * 179.97438 * 10 9 7 12 12 C 1.29523 * 117.62969 * 359.97438 * 11 10 9 13 13 C 1.50703 * 124.55672 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46592 * 90.03011 * 13 12 11 15 15 C 1.50694 * 109.46971 * 179.97438 * 14 13 12 16 16 C 1.38235 * 120.00111 * 269.72971 * 15 14 13 17 17 C 1.38241 * 120.00241 * 179.76952 * 16 15 14 18 18 C 1.38234 * 119.99603 * 0.49783 * 17 16 15 19 19 C 1.38237 * 120.00179 * 359.75109 * 18 17 16 20 20 C 1.38232 * 120.00028 * 0.02562 * 19 18 17 21 21 S 1.70876 * 110.87662 * 0.02562 * 12 11 10 22 22 H 0.97005 * 119.99908 * 0.02562 * 1 2 3 23 23 H 1.08006 * 123.21903 * 0.24774 * 10 9 7 24 24 H 1.08997 * 109.46642 * 210.02490 * 13 12 11 25 25 H 1.08992 * 109.47449 * 330.03302 * 13 12 11 26 26 H 1.08999 * 109.46979 * 299.99626 * 14 13 12 27 27 H 1.09001 * 109.47160 * 59.99437 * 14 13 12 28 28 H 1.08004 * 120.00142 * 359.97438 * 16 15 14 29 29 H 1.07996 * 120.00159 * 180.23167 * 17 16 15 30 30 H 1.07998 * 120.00036 * 179.72715 * 18 17 16 31 31 H 1.08000 * 120.00015 * 179.97438 * 19 18 17 32 32 H 1.07999 * 120.00507 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.7027 1.3463 0.0006 5 1 1.8840 2.3963 -1.2126 6 1 1.8839 2.3965 1.2125 7 6 2.0090 -1.2131 0.0005 8 1 3.0890 -1.2132 0.0010 9 6 1.3087 -2.4259 0.0005 10 6 -0.0689 -2.5769 -0.0005 11 7 -0.4575 -3.8245 -0.0007 12 6 0.4595 -4.7392 -0.0006 13 6 0.1882 -6.2216 -0.0003 14 6 0.0971 -6.7236 -1.4428 15 6 -0.1736 -8.2060 -1.4426 16 6 0.8799 -9.1010 -1.4477 17 6 0.6316 -10.4609 -1.4427 18 6 -0.6702 -10.9258 -1.4431 19 6 -1.7238 -10.0308 -1.4432 20 6 -1.4755 -8.6710 -1.4435 21 16 2.0182 -4.0389 0.0007 22 1 -0.4850 0.8401 -0.0004 23 1 -0.7555 -1.7432 -0.0053 24 1 0.9980 -6.7390 0.5140 25 1 -0.7529 -6.4187 0.5130 26 1 -0.7127 -6.2061 -1.9571 27 1 1.0382 -6.5264 -1.9562 28 1 1.8970 -8.7378 -1.4522 29 1 1.4547 -11.1601 -1.4429 30 1 -0.8643 -11.9882 -1.4436 31 1 -2.7409 -10.3940 -1.4438 32 1 -2.2985 -7.9717 -1.4440 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082418851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:51 Heat of formation + Delta-G solvation = 32.493832 kcal Electronic energy + Delta-G solvation = -15524.923981 eV Core-core repulsion = 12961.628125 eV Total energy + Delta-G solvation = -2563.295856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.15753 -37.52791 -34.55980 -33.61111 -30.77764 -30.19728 -28.72059 -25.44103 -23.60010 -22.44447 -21.86379 -20.58345 -19.06498 -16.82444 -16.57687 -16.45573 -15.13580 -15.03092 -14.79547 -13.77107 -13.41041 -13.29510 -13.16773 -13.03301 -12.40626 -12.21131 -11.98806 -11.61478 -11.40487 -11.26604 -11.14273 -11.00286 -10.68381 -10.38711 -10.22320 -9.76679 -9.59786 -8.82244 -8.56641 -7.97618 -7.91918 -7.19417 -6.98934 -4.58817 1.47784 1.50036 2.39916 2.88434 2.95538 3.00177 3.21646 3.61904 3.73089 3.90570 4.39593 4.97379 4.98248 5.05696 5.11327 5.23982 5.54113 5.63012 5.73831 5.88677 6.00296 6.09021 6.19968 6.25918 6.51668 6.57802 6.59440 6.69246 6.72868 6.90449 7.12746 7.16003 7.43219 7.77732 8.13405 8.34851 8.64745 9.80922 9.82286 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.060973 B = 0.003762 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.105834 B = 7440.147101 C = 7758.013698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.063 3.937 3 Si 0.935 3.065 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.375 4.375 8 H 0.087 0.913 9 C 0.015 3.985 10 C -0.142 4.142 11 N -0.424 5.424 12 C -0.129 4.129 13 C 0.004 3.996 14 C -0.077 4.077 15 C -0.068 4.068 16 C -0.120 4.120 17 C -0.121 4.121 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.118 4.118 21 S -0.063 6.063 22 H 0.288 0.712 23 H 0.196 0.804 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -10.622 -2.345 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.159 4.159 3 Si 0.758 3.242 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.412 4.412 8 H 0.105 0.895 9 C -0.106 4.106 10 C -0.296 4.296 11 N -0.135 5.135 12 C -0.398 4.398 13 C -0.037 4.037 14 C -0.115 4.115 15 C -0.068 4.068 16 C -0.138 4.138 17 C -0.139 4.139 18 C -0.153 4.153 19 C -0.139 4.139 20 C -0.136 4.136 21 S 0.187 5.813 22 H 0.100 0.900 23 H 0.212 0.788 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.770 -11.186 -2.336 11.453 hybrid contribution -0.220 1.396 0.007 1.414 sum 0.549 -9.790 -2.328 10.078 Atomic orbital electron populations 1.69486 1.07835 1.29675 1.32025 1.26135 0.95112 1.01861 0.92816 0.85805 0.80414 0.79012 0.79000 1.18051 1.19316 1.19321 1.19081 0.95009 0.88766 1.38386 0.89457 1.23319 0.95694 0.93104 0.98521 1.23113 0.93554 0.91958 1.20984 1.65404 1.36971 1.01730 1.09426 1.24973 0.89982 0.97733 1.27098 1.19502 1.01025 0.88608 0.94580 1.20715 1.02765 0.89509 0.98515 1.20149 0.93111 0.96293 0.97274 1.21119 0.99008 0.92988 1.00654 1.21108 0.96693 0.95528 1.00591 1.21064 0.92976 0.99263 1.01966 1.21118 0.98837 0.93414 1.00515 1.21141 0.96615 0.95486 1.00343 1.82951 1.15224 1.03848 1.79313 0.89964 0.78850 0.92307 0.91465 0.90817 0.91151 0.86084 0.86428 0.86595 0.86415 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.71 10.18 55.56 0.57 -18.14 16 2 C 0.06 1.50 5.50 -17.27 -0.09 1.40 16 3 Si 0.93 17.31 29.56 -169.99 -5.03 12.28 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 6 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.38 -9.55 9.42 -38.22 -0.36 -9.91 16 8 H 0.09 2.09 7.85 -52.48 -0.41 1.68 16 9 C 0.02 0.41 6.30 -38.78 -0.24 0.16 16 10 C -0.14 -3.97 10.55 -17.92 -0.19 -4.16 16 11 N -0.42 -11.35 10.48 -10.84 -0.11 -11.47 16 12 C -0.13 -3.10 6.61 -13.25 -0.09 -3.19 16 13 C 0.00 0.08 5.77 -27.88 -0.16 -0.08 16 14 C -0.08 -1.30 5.33 -27.88 -0.15 -1.45 16 15 C -0.07 -1.01 5.13 -104.62 -0.54 -1.55 16 16 C -0.12 -1.61 9.70 -39.58 -0.38 -1.99 16 17 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 18 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 19 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 20 C -0.12 -1.62 9.70 -39.58 -0.38 -2.01 16 21 S -0.06 -1.50 23.13 -107.50 -2.49 -3.98 16 22 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 23 H 0.20 5.54 5.36 -52.48 -0.28 5.26 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 27 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 28 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -28.15 293.07 -10.05 -38.20 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.63 Total: 7.05 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -3.78 Total: -28.35 kcal Atomic # 7 Polarization: -30.06 SS G_CDS: 0.45 Total: -29.61 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.49 Total: -3.98 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.15 -10.05 -38.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.694 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds