Wall clock time and date at job start Mon Mar 30 2020 07:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86793 * 120.00235 * 2 1 4 4 H 1.48503 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47190 * 299.99574 * 3 2 1 6 6 H 1.48506 * 109.47384 * 59.99613 * 3 2 1 7 7 C 1.40075 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.40044 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.38583 * 126.25645 * 0.02562 * 9 7 2 11 11 N 1.30674 * 113.55349 * 179.97438 * 10 9 7 12 12 C 1.29523 * 117.62969 * 359.97438 * 11 10 9 13 13 C 1.50703 * 124.55672 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46592 * 90.03011 * 13 12 11 15 15 C 1.50694 * 109.46971 * 179.97438 * 14 13 12 16 16 C 1.38235 * 120.00111 * 269.72971 * 15 14 13 17 17 C 1.38241 * 120.00241 * 179.76952 * 16 15 14 18 18 C 1.38234 * 119.99603 * 0.49783 * 17 16 15 19 19 C 1.38237 * 120.00179 * 359.75109 * 18 17 16 20 20 C 1.38232 * 120.00028 * 0.02562 * 19 18 17 21 21 S 1.70876 * 110.87662 * 0.02562 * 12 11 10 22 22 H 0.97005 * 119.99908 * 0.02562 * 1 2 3 23 23 H 1.08006 * 123.21903 * 0.24774 * 10 9 7 24 24 H 1.08997 * 109.46642 * 210.02490 * 13 12 11 25 25 H 1.08992 * 109.47449 * 330.03302 * 13 12 11 26 26 H 1.08999 * 109.46979 * 299.99626 * 14 13 12 27 27 H 1.09001 * 109.47160 * 59.99437 * 14 13 12 28 28 H 1.08004 * 120.00142 * 359.97438 * 16 15 14 29 29 H 1.07996 * 120.00159 * 180.23167 * 17 16 15 30 30 H 1.07998 * 120.00036 * 179.72715 * 18 17 16 31 31 H 1.08000 * 120.00015 * 179.97438 * 19 18 17 32 32 H 1.07999 * 120.00507 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.7027 1.3463 0.0006 5 1 1.8840 2.3963 -1.2126 6 1 1.8839 2.3965 1.2125 7 6 2.0090 -1.2131 0.0005 8 1 3.0890 -1.2132 0.0010 9 6 1.3087 -2.4259 0.0005 10 6 -0.0689 -2.5769 -0.0005 11 7 -0.4575 -3.8245 -0.0007 12 6 0.4595 -4.7392 -0.0006 13 6 0.1882 -6.2216 -0.0003 14 6 0.0971 -6.7236 -1.4428 15 6 -0.1736 -8.2060 -1.4426 16 6 0.8799 -9.1010 -1.4477 17 6 0.6316 -10.4609 -1.4427 18 6 -0.6702 -10.9258 -1.4431 19 6 -1.7238 -10.0308 -1.4432 20 6 -1.4755 -8.6710 -1.4435 21 16 2.0182 -4.0389 0.0007 22 1 -0.4850 0.8401 -0.0004 23 1 -0.7555 -1.7432 -0.0053 24 1 0.9980 -6.7390 0.5140 25 1 -0.7529 -6.4187 0.5130 26 1 -0.7127 -6.2061 -1.9571 27 1 1.0382 -6.5264 -1.9562 28 1 1.8970 -8.7378 -1.4522 29 1 1.4547 -11.1601 -1.4429 30 1 -0.8643 -11.9882 -1.4436 31 1 -2.7409 -10.3940 -1.4438 32 1 -2.2985 -7.9717 -1.4440 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082418851.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:51 Heat of formation + Delta-G solvation = 18.662367 kcal Electronic energy + Delta-G solvation = -15525.523759 eV Core-core repulsion = 12961.628125 eV Total energy + Delta-G solvation = -2563.895634 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20078 -39.45204 -36.28366 -35.09684 -31.76053 -31.72667 -30.37403 -27.07809 -25.33027 -23.55973 -23.40341 -21.77619 -20.97991 -18.64199 -18.38370 -17.57460 -16.63999 -16.13529 -16.08459 -15.44558 -14.88179 -14.75902 -14.57720 -14.21357 -13.81092 -13.75318 -13.55293 -13.27610 -13.10315 -12.77125 -12.67020 -12.13185 -11.94901 -11.75932 -11.67006 -11.57766 -11.47855 -9.97252 -9.93115 -9.77917 -9.57757 -9.14162 -8.79077 -6.55579 0.43980 0.54171 0.58541 1.21772 1.41052 1.50674 1.58080 1.65779 2.13439 2.48925 2.92585 3.08796 3.77852 3.95475 4.18423 4.22248 4.32932 4.38932 4.51430 4.61193 4.69105 4.75095 4.85832 5.05526 5.13651 5.19519 5.24805 5.27699 5.50052 5.62810 5.65641 5.80017 5.81399 6.17596 6.20827 6.41957 6.58322 7.81003 8.05616 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.060973 B = 0.003762 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.105834 B = 7440.147101 C = 7758.013698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.022 3.978 3 Si 1.016 2.984 4 H -0.249 1.249 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.398 4.398 8 H 0.098 0.902 9 C -0.017 4.017 10 C -0.184 4.184 11 N -0.451 5.451 12 C -0.124 4.124 13 C 0.007 3.993 14 C -0.063 4.063 15 C -0.089 4.089 16 C -0.130 4.130 17 C -0.122 4.122 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.134 4.134 21 S -0.036 6.036 22 H 0.301 0.699 23 H 0.180 0.820 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -11.743 -2.455 12.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.198 4.198 3 Si 0.833 3.167 4 H -0.172 1.172 5 H -0.183 1.183 6 H -0.184 1.184 7 C -0.435 4.435 8 H 0.116 0.884 9 C -0.139 4.139 10 C -0.336 4.336 11 N -0.163 5.163 12 C -0.394 4.394 13 C -0.034 4.034 14 C -0.102 4.102 15 C -0.089 4.089 16 C -0.148 4.148 17 C -0.140 4.140 18 C -0.148 4.148 19 C -0.141 4.141 20 C -0.152 4.152 21 S 0.214 5.786 22 H 0.113 0.887 23 H 0.196 0.804 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.851 -12.315 -2.446 12.691 hybrid contribution -0.600 1.632 0.039 1.739 sum 1.250 -10.683 -2.407 11.022 Atomic orbital electron populations 1.69538 1.09563 1.31470 1.31166 1.27281 0.95871 1.05295 0.91340 0.84649 0.79023 0.73573 0.79453 1.17238 1.18346 1.18360 1.19517 0.95709 0.89370 1.38892 0.88417 1.23684 0.95951 0.95065 0.99165 1.22975 0.94166 0.92236 1.24227 1.65401 1.38097 1.01901 1.10874 1.25824 0.89908 0.99373 1.24344 1.19621 1.01474 0.85739 0.96545 1.20466 1.01854 0.91431 0.96407 1.19960 0.94235 0.94795 0.99889 1.21279 0.98885 0.93812 1.00837 1.21457 0.97986 0.95124 0.99402 1.21491 0.92479 1.00807 1.00035 1.21424 1.00506 0.92583 0.99628 1.21253 0.96152 0.96691 1.01123 1.82650 1.14600 1.02074 1.79270 0.88745 0.80415 0.90702 0.91570 0.92645 0.91505 0.85504 0.83708 0.83487 0.84085 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.55 10.18 21.86 0.22 -39.33 16 2 C 0.02 1.05 5.50 85.28 0.47 1.52 16 3 Si 1.02 34.54 29.56 68.60 2.03 36.56 16 4 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 5 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 6 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 7 C -0.40 -20.54 9.42 23.15 0.22 -20.32 16 8 H 0.10 4.66 7.85 -2.91 -0.02 4.64 16 9 C -0.02 -0.95 6.30 22.79 0.14 -0.81 16 10 C -0.18 -10.75 10.55 84.95 0.90 -9.86 16 11 N -0.45 -25.10 10.48 -188.22 -1.97 -27.07 16 12 C -0.12 -6.07 6.61 88.45 0.59 -5.49 16 13 C 0.01 0.28 5.77 29.85 0.17 0.46 16 14 C -0.06 -2.17 5.33 29.85 0.16 -2.01 16 15 C -0.09 -2.58 5.13 -19.87 -0.10 -2.68 16 16 C -0.13 -3.28 9.70 22.27 0.22 -3.06 16 17 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 18 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 19 C -0.12 -2.67 10.05 22.27 0.22 -2.44 16 20 C -0.13 -3.60 9.70 22.27 0.22 -3.39 16 21 S -0.04 -1.72 23.13 -56.49 -1.31 -3.03 16 22 H 0.30 13.12 8.30 -92.70 -0.77 12.35 16 23 H 0.18 10.78 5.36 -2.91 -0.02 10.77 16 24 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.05 2.07 8.09 -2.39 -0.02 2.05 16 27 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 28 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -62.45 293.07 3.73 -58.72 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 1.12 Total: 26.79 kcal Atomic # 6 Polarization: -56.28 SS G_CDS: 3.64 Total: -52.64 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -1.75 Total: -66.40 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.56 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -1.31 Total: -3.03 kcal Total: -62.45 3.73 -58.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418851.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.380 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds