Wall clock time and date at job start Mon Mar 30 2020 07:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29945 * 122.56158 * 2 1 4 4 C 1.30896 * 117.58776 * 179.97438 * 3 2 1 5 5 C 1.47408 * 125.13411 * 179.97438 * 4 3 2 6 6 C 1.39858 * 120.16505 * 186.40174 * 5 4 3 7 7 C 1.37854 * 119.82714 * 180.25479 * 6 5 4 8 8 C 1.38448 * 120.17110 * 359.77101 * 7 6 5 9 9 C 1.38409 * 120.33761 * 359.97438 * 8 7 6 10 10 C 1.37899 * 120.16534 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.08261 * 179.97438 * 10 9 8 12 12 S 1.76083 * 109.72583 * 0.24113 * 4 3 2 13 13 C 1.38862 * 122.56277 * 179.97438 * 2 1 3 14 14 C 1.39747 * 126.09744 * 0.02562 * 13 2 1 15 15 H 1.07992 * 120.00208 * 0.02562 * 14 13 2 16 16 C 1.40127 * 119.99577 * 179.97438 * 14 13 2 17 17 N 1.30828 * 120.00112 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99857 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47270 * 59.99963 * 18 16 14 20 20 H 1.48509 * 109.47347 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47064 * 299.99924 * 18 16 14 22 22 H 1.09001 * 109.47323 * 90.02218 * 1 2 3 23 23 H 1.08993 * 109.47521 * 210.02678 * 1 2 3 24 24 H 1.09007 * 109.47337 * 330.03268 * 1 2 3 25 25 H 1.08003 * 120.08923 * 359.97438 * 6 5 4 26 26 H 1.08003 * 119.91828 * 179.74373 * 7 6 5 27 27 H 1.07997 * 119.83360 * 179.97438 * 8 7 6 28 28 H 1.08002 * 119.91344 * 180.02562 * 9 8 7 29 29 H 1.08997 * 109.47499 * 96.13270 * 11 10 9 30 30 H 1.08997 * 109.47335 * 336.12803 * 11 10 9 31 31 H 1.09004 * 109.47198 * 216.13210 * 11 10 9 32 32 H 0.97007 * 119.99566 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2063 1.0952 0.0000 4 6 3.5104 0.9817 0.0005 5 6 4.4600 2.1091 0.0001 6 6 5.8319 1.8724 -0.1341 7 6 6.7142 2.9316 -0.1284 8 6 6.2451 4.2273 0.0050 9 6 4.8885 4.4699 0.1330 10 6 3.9935 3.4208 0.1290 11 6 2.5168 3.6871 0.2691 12 16 3.9587 -0.7211 -0.0059 13 6 2.2543 -1.1703 0.0005 14 6 1.7458 -2.4720 0.0006 15 1 0.6782 -2.6346 -0.0002 16 6 2.6213 -3.5661 0.0006 17 7 3.9146 -3.3691 0.0011 18 14 1.9416 -5.3061 0.0000 19 1 1.1098 -5.5122 -1.2128 20 1 3.0656 -6.2767 0.0007 21 1 1.1090 -5.5127 1.2122 22 1 -0.3634 -0.0004 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8903 0.5134 25 1 6.1994 0.8621 -0.2375 26 1 7.7742 2.7501 -0.2277 27 1 6.9412 5.0530 0.0093 28 1 4.5300 5.4835 0.2363 29 1 2.0578 3.7181 -0.7191 30 1 2.3659 4.6433 0.7699 31 1 2.0585 2.8923 0.8577 32 1 4.5206 -4.1266 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082418981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:30 Heat of formation + Delta-G solvation = 29.586717 kcal Electronic energy + Delta-G solvation = -16289.434257 eV Core-core repulsion = 13726.012339 eV Total energy + Delta-G solvation = -2563.421918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.67732 -37.40039 -34.51437 -32.20265 -31.23137 -29.55815 -28.10512 -26.31396 -24.33214 -23.06835 -21.19194 -20.11103 -18.68129 -17.27761 -15.99845 -15.73401 -14.98377 -14.45193 -14.08992 -13.56906 -13.49757 -12.76381 -12.55312 -12.44324 -12.13126 -12.01105 -11.72854 -11.70481 -11.45725 -11.19609 -11.10107 -10.90654 -10.65344 -10.46131 -10.31548 -10.01790 -9.36652 -8.56069 -8.09349 -7.90319 -7.72738 -7.22201 -6.92921 -4.69776 1.67415 2.06662 2.53361 2.76573 2.81164 2.99323 3.28879 3.47091 3.82528 4.02870 4.57833 4.92962 5.44876 5.49379 5.60930 5.71580 5.95099 6.20354 6.26183 6.38477 6.46295 6.50896 6.57241 6.64240 6.68222 6.70415 6.84370 7.04030 7.11610 7.12141 7.21865 7.48390 7.50570 7.69980 7.78533 8.08877 8.21743 9.49677 9.61986 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.032087 B = 0.006227 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.405429 B = 4495.399004 C = 5342.779471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.134 4.134 3 N -0.397 5.397 4 C -0.156 4.156 5 C 0.060 3.940 6 C -0.138 4.138 7 C -0.119 4.119 8 C -0.158 4.158 9 C -0.118 4.118 10 C -0.089 4.089 11 C -0.102 4.102 12 S 0.098 5.902 13 C 0.007 3.993 14 C -0.344 4.344 15 H 0.104 0.896 16 C 0.044 3.956 17 N -0.756 5.756 18 Si 0.941 3.059 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.258 1.258 22 H 0.039 0.961 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.096 0.904 32 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 2.178 0.208 2.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.274 4.274 3 N -0.109 5.109 4 C -0.415 4.415 5 C 0.056 3.944 6 C -0.158 4.158 7 C -0.137 4.137 8 C -0.177 4.177 9 C -0.136 4.136 10 C -0.092 4.092 11 C -0.159 4.159 12 S 0.352 5.648 13 C -0.118 4.118 14 C -0.381 4.381 15 H 0.122 0.878 16 C -0.180 4.180 17 N -0.381 5.381 18 Si 0.763 3.237 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.182 1.182 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.156 2.174 0.200 3.068 hybrid contribution -0.918 -0.815 -0.062 1.230 sum 1.237 1.359 0.138 1.843 Atomic orbital electron populations 1.19725 0.90079 1.00140 0.99603 1.19990 0.95875 0.86389 1.25192 1.65381 1.05123 1.31793 1.08609 1.24580 0.91687 0.96467 1.28741 1.17852 0.91015 0.90378 0.95112 1.21076 0.92380 0.98755 1.03583 1.20806 0.98659 0.92728 1.01482 1.20882 0.95252 0.96314 1.05221 1.20829 0.93124 0.97854 1.01808 1.19976 0.96342 0.91889 1.01014 1.20861 0.91928 1.00898 1.02196 1.84878 1.07186 0.97692 1.75087 1.23131 0.94407 0.97111 0.97101 1.19336 0.95913 0.88521 1.34322 0.87771 1.26391 0.94561 1.03942 0.93125 1.68995 1.03589 1.35818 1.29668 0.85757 0.79591 0.77722 0.80617 1.18165 1.19561 1.18169 0.94185 0.92925 0.93600 0.86563 0.87016 0.87307 0.87125 0.92182 0.94395 0.88551 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.74 10.02 36.00 0.36 -0.38 16 2 C -0.13 -3.33 6.84 -83.16 -0.57 -3.90 16 3 N -0.40 -10.00 7.04 -6.67 -0.05 -10.05 16 4 C -0.16 -3.89 7.18 -14.22 -0.10 -3.99 16 5 C 0.06 1.35 5.88 -104.97 -0.62 0.73 16 6 C -0.14 -2.79 9.60 -39.12 -0.38 -3.17 16 7 C -0.12 -2.05 10.03 -39.64 -0.40 -2.44 16 8 C -0.16 -2.59 10.04 -39.44 -0.40 -2.99 16 9 C -0.12 -2.07 9.66 -39.64 -0.38 -2.45 16 10 C -0.09 -1.83 5.92 -104.16 -0.62 -2.45 16 11 C -0.10 -1.99 8.83 36.01 0.32 -1.67 16 12 S 0.10 2.44 19.40 -107.50 -2.09 0.35 16 13 C 0.01 0.17 6.24 -38.79 -0.24 -0.07 16 14 C -0.34 -8.09 8.89 -38.31 -0.34 -8.43 16 15 H 0.10 2.25 6.86 -52.49 -0.36 1.89 16 16 C 0.04 0.96 5.50 -17.27 -0.09 0.87 16 17 N -0.76 -17.20 10.73 55.56 0.60 -16.60 16 18 Si 0.94 16.09 29.56 -169.99 -5.03 11.07 16 19 H -0.26 -4.35 7.11 56.52 0.40 -3.95 16 20 H -0.27 -4.52 7.11 56.52 0.40 -4.12 16 21 H -0.26 -4.35 7.11 56.52 0.40 -3.95 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.05 1.01 7.06 -51.93 -0.37 0.64 16 24 H 0.04 0.89 8.14 -51.92 -0.42 0.46 16 25 H 0.12 2.32 7.30 -52.48 -0.38 1.94 16 26 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.62 8.04 -51.93 -0.42 0.20 16 31 H 0.10 2.10 5.77 -51.93 -0.30 1.81 16 32 H 0.30 6.15 8.30 -40.82 -0.34 5.81 16 LS Contribution 284.62 15.07 4.29 4.29 Total: -1.00 -26.81 284.62 -9.23 -36.04 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.50 Total: 5.26 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: -3.46 Total: -30.36 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.55 Total: -26.66 kcal Atomic # 14 Polarization: 16.09 SS G_CDS: -5.03 Total: 11.07 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.09 Total: 0.35 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.81 -9.23 -36.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.623 kcal (2) G-P(sol) polarization free energy of solvation -26.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds