Wall clock time and date at job start Mon Mar 30 2020 07:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29945 * 122.56158 * 2 1 4 4 C 1.30896 * 117.58776 * 179.97438 * 3 2 1 5 5 C 1.47408 * 125.13411 * 179.97438 * 4 3 2 6 6 C 1.39858 * 120.16505 * 186.40174 * 5 4 3 7 7 C 1.37854 * 119.82714 * 180.25479 * 6 5 4 8 8 C 1.38448 * 120.17110 * 359.77101 * 7 6 5 9 9 C 1.38409 * 120.33761 * 359.97438 * 8 7 6 10 10 C 1.37899 * 120.16534 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.08261 * 179.97438 * 10 9 8 12 12 S 1.76083 * 109.72583 * 0.24113 * 4 3 2 13 13 C 1.38862 * 122.56277 * 179.97438 * 2 1 3 14 14 C 1.39747 * 126.09744 * 0.02562 * 13 2 1 15 15 H 1.07992 * 120.00208 * 0.02562 * 14 13 2 16 16 C 1.40127 * 119.99577 * 179.97438 * 14 13 2 17 17 N 1.30828 * 120.00112 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99857 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47270 * 59.99963 * 18 16 14 20 20 H 1.48509 * 109.47347 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47064 * 299.99924 * 18 16 14 22 22 H 1.09001 * 109.47323 * 90.02218 * 1 2 3 23 23 H 1.08993 * 109.47521 * 210.02678 * 1 2 3 24 24 H 1.09007 * 109.47337 * 330.03268 * 1 2 3 25 25 H 1.08003 * 120.08923 * 359.97438 * 6 5 4 26 26 H 1.08003 * 119.91828 * 179.74373 * 7 6 5 27 27 H 1.07997 * 119.83360 * 179.97438 * 8 7 6 28 28 H 1.08002 * 119.91344 * 180.02562 * 9 8 7 29 29 H 1.08997 * 109.47499 * 96.13270 * 11 10 9 30 30 H 1.08997 * 109.47335 * 336.12803 * 11 10 9 31 31 H 1.09004 * 109.47198 * 216.13210 * 11 10 9 32 32 H 0.97007 * 119.99566 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2063 1.0952 0.0000 4 6 3.5104 0.9817 0.0005 5 6 4.4600 2.1091 0.0001 6 6 5.8319 1.8724 -0.1341 7 6 6.7142 2.9316 -0.1284 8 6 6.2451 4.2273 0.0050 9 6 4.8885 4.4699 0.1330 10 6 3.9935 3.4208 0.1290 11 6 2.5168 3.6871 0.2691 12 16 3.9587 -0.7211 -0.0059 13 6 2.2543 -1.1703 0.0005 14 6 1.7458 -2.4720 0.0006 15 1 0.6782 -2.6346 -0.0002 16 6 2.6213 -3.5661 0.0006 17 7 3.9146 -3.3691 0.0011 18 14 1.9416 -5.3061 0.0000 19 1 1.1098 -5.5122 -1.2128 20 1 3.0656 -6.2767 0.0007 21 1 1.1090 -5.5127 1.2122 22 1 -0.3634 -0.0004 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8903 0.5134 25 1 6.1994 0.8621 -0.2375 26 1 7.7742 2.7501 -0.2277 27 1 6.9412 5.0530 0.0093 28 1 4.5300 5.4835 0.2363 29 1 2.0578 3.7181 -0.7191 30 1 2.3659 4.6433 0.7699 31 1 2.0585 2.8923 0.8577 32 1 4.5206 -4.1266 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082418981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:29 Heat of formation + Delta-G solvation = 17.020864 kcal Electronic energy + Delta-G solvation = -16289.979153 eV Core-core repulsion = 13726.012339 eV Total energy + Delta-G solvation = -2563.966815 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22979 -39.10657 -36.24228 -33.72714 -32.80466 -31.20341 -29.82622 -27.81416 -26.04061 -24.75257 -22.71003 -21.66296 -20.43873 -19.02141 -17.59913 -17.44097 -16.45933 -15.95610 -15.60511 -15.28669 -15.03464 -14.35506 -14.15722 -13.89915 -13.75117 -13.73179 -13.30026 -13.23957 -13.01690 -12.77241 -12.64586 -12.47777 -12.10844 -11.93942 -11.77393 -11.57897 -11.22194 -10.20663 -9.74306 -9.55772 -9.48736 -8.93455 -8.74158 -6.50158 0.06332 0.60928 0.94795 1.34469 1.44912 1.52369 1.56311 1.89529 2.11470 2.35518 2.94332 3.21459 3.88122 4.15257 4.18713 4.32341 4.53379 4.66556 4.77605 4.78478 4.83866 4.95060 4.97129 5.04180 5.09067 5.18559 5.30056 5.34849 5.55291 5.65087 5.69781 5.77690 5.97401 6.00017 6.26804 6.31258 6.45571 7.77395 7.85716 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.032087 B = 0.006227 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.405429 B = 4495.399004 C = 5342.779471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.171 4.171 3 N -0.407 5.407 4 C -0.170 4.170 5 C 0.018 3.982 6 C -0.153 4.153 7 C -0.116 4.116 8 C -0.141 4.141 9 C -0.116 4.116 10 C -0.108 4.108 11 C -0.094 4.094 12 S 0.063 5.937 13 C -0.023 4.023 14 C -0.360 4.360 15 H 0.120 0.880 16 C 0.007 3.993 17 N -0.782 5.782 18 Si 1.017 2.983 19 H -0.251 1.251 20 H -0.262 1.262 21 H -0.251 1.251 22 H 0.046 0.954 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.105 0.895 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.144 0.856 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 2.797 0.272 3.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.311 4.311 3 N -0.119 5.119 4 C -0.430 4.430 5 C 0.014 3.986 6 C -0.173 4.173 7 C -0.134 4.134 8 C -0.160 4.160 9 C -0.134 4.134 10 C -0.111 4.111 11 C -0.151 4.151 12 S 0.317 5.683 13 C -0.146 4.146 14 C -0.397 4.397 15 H 0.137 0.863 16 C -0.215 4.215 17 N -0.407 5.407 18 Si 0.834 3.166 19 H -0.175 1.175 20 H -0.186 1.186 21 H -0.174 1.174 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.123 0.877 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.162 0.838 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.796 2.815 0.264 3.976 hybrid contribution -0.968 -0.896 -0.079 1.321 sum 1.828 1.919 0.185 2.657 Atomic orbital electron populations 1.19712 0.87744 1.00963 1.00275 1.20616 0.97692 0.86337 1.26424 1.65464 1.05329 1.31970 1.09149 1.25116 0.92195 0.96931 1.28722 1.18112 0.91639 0.90741 0.98063 1.21184 0.92199 0.99498 1.04408 1.21214 0.99886 0.92343 0.99925 1.21417 0.95520 0.97083 1.01949 1.21223 0.93326 0.98491 1.00337 1.20219 0.97238 0.91956 1.01689 1.20728 0.91558 1.01386 1.01423 1.84711 1.08284 0.99002 1.76352 1.23515 0.94342 0.98357 0.98406 1.19794 0.97123 0.88559 1.34209 0.86270 1.27472 0.94461 1.07872 0.91688 1.69049 1.04971 1.37593 1.29051 0.84662 0.79079 0.71923 0.80894 1.17460 1.18611 1.17419 0.93474 0.91829 0.92926 0.87658 0.83653 0.82900 0.83779 0.93133 0.91287 0.91450 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.17 10.02 71.23 0.71 -0.45 16 2 C -0.17 -8.88 6.84 42.99 0.29 -8.59 16 3 N -0.41 -21.52 7.04 -175.01 -1.23 -22.75 16 4 C -0.17 -8.90 7.18 87.25 0.63 -8.27 16 5 C 0.02 0.82 5.88 -20.09 -0.12 0.70 16 6 C -0.15 -6.24 9.60 22.57 0.22 -6.02 16 7 C -0.12 -3.70 10.03 22.23 0.22 -3.47 16 8 C -0.14 -4.04 10.04 22.36 0.22 -3.82 16 9 C -0.12 -3.70 9.66 22.23 0.21 -3.48 16 10 C -0.11 -4.38 5.92 -19.56 -0.12 -4.49 16 11 C -0.09 -3.68 8.83 71.24 0.63 -3.05 16 12 S 0.06 3.33 19.40 -56.49 -1.10 2.23 16 13 C -0.02 -1.20 6.24 22.78 0.14 -1.05 16 14 C -0.36 -17.26 8.89 23.09 0.21 -17.06 16 15 H 0.12 5.16 6.86 -2.91 -0.02 5.14 16 16 C 0.01 0.28 5.50 85.30 0.47 0.75 16 17 N -0.78 -36.21 10.73 21.87 0.23 -35.98 16 18 Si 1.02 31.94 29.56 68.60 2.03 33.97 16 19 H -0.25 -7.60 7.11 99.48 0.71 -6.89 16 20 H -0.26 -7.79 7.11 99.48 0.71 -7.08 16 21 H -0.25 -7.57 7.11 99.48 0.71 -6.86 16 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.06 2.46 7.06 -2.39 -0.02 2.44 16 24 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.11 4.40 7.30 -2.91 -0.02 4.38 16 26 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 27 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.17 8.04 -2.39 -0.02 2.15 16 31 H 0.07 3.04 5.77 -2.38 -0.01 3.03 16 32 H 0.31 12.78 8.30 -92.70 -0.77 12.01 16 Total: -1.00 -61.17 284.62 4.79 -56.38 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 1.13 Total: 24.45 kcal Atomic # 6 Polarization: -62.03 SS G_CDS: 3.73 Total: -58.31 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -1.00 Total: -58.73 kcal Atomic # 14 Polarization: 31.94 SS G_CDS: 2.03 Total: 33.97 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.10 Total: 2.23 kcal Total: -61.17 4.79 -56.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082418981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.402 kcal (2) G-P(sol) polarization free energy of solvation -61.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds