Wall clock time and date at job start Mon Mar 30 2020 07:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29946 * 122.56230 * 2 1 4 4 C 1.30886 * 117.58836 * 180.02562 * 3 2 1 5 5 C 1.47413 * 125.13498 * 180.02562 * 4 3 2 6 6 C 1.39838 * 120.16696 * 179.67571 * 5 4 3 7 7 C 1.37872 * 119.82858 * 179.74626 * 6 5 4 8 8 C 1.38426 * 120.16645 * 0.51149 * 7 6 5 9 9 C 1.50708 * 119.82997 * 179.74152 * 8 7 6 10 10 C 1.38425 * 120.33993 * 359.76518 * 8 7 6 11 11 C 1.37876 * 120.16662 * 359.97438 * 10 8 7 12 12 S 1.76085 * 109.72850 * 0.02562 * 4 3 2 13 13 C 1.38855 * 122.55957 * 180.02562 * 2 1 3 14 14 C 1.39747 * 126.10398 * 359.96420 * 13 2 1 15 15 H 1.08001 * 119.99689 * 359.97438 * 14 13 2 16 16 C 1.40132 * 119.99970 * 179.97438 * 14 13 2 17 17 N 1.30825 * 120.00132 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47026 * 60.00042 * 18 16 14 20 20 H 1.48500 * 109.47102 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46593 * 299.99835 * 18 16 14 22 22 H 1.08997 * 109.46748 * 269.97779 * 1 2 3 23 23 H 1.08998 * 109.47095 * 29.97750 * 1 2 3 24 24 H 1.09000 * 109.46910 * 149.97757 * 1 2 3 25 25 H 1.07998 * 120.08043 * 359.97438 * 6 5 4 26 26 H 1.08001 * 119.91645 * 180.25691 * 7 6 5 27 27 H 1.09002 * 109.47129 * 270.02178 * 9 8 7 28 28 H 1.09002 * 109.46770 * 30.02472 * 9 8 7 29 29 H 1.08996 * 109.47023 * 150.02165 * 9 8 7 30 30 H 1.08001 * 119.91226 * 179.97438 * 10 8 7 31 31 H 1.08004 * 120.08428 * 179.97438 * 11 10 8 32 32 H 0.96998 * 120.00500 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2064 1.0952 0.0000 4 6 3.5104 0.9817 -0.0005 5 6 4.4601 2.1092 -0.0001 6 6 5.8374 1.8677 0.0061 7 6 6.7194 2.9274 0.0012 8 6 6.2446 4.2277 0.0009 9 6 7.2155 5.3803 0.0014 10 6 4.8826 4.4747 0.0005 11 6 3.9881 3.4254 0.0000 12 16 3.9588 -0.7211 -0.0018 13 6 2.2543 -1.1703 -0.0005 14 6 1.7459 -2.4720 -0.0004 15 1 0.6782 -2.6346 0.0006 16 6 2.6213 -3.5662 -0.0015 17 7 3.9147 -3.3692 -0.0032 18 14 1.9417 -5.3062 -0.0006 19 1 1.1080 -5.5126 -1.2121 20 1 3.0657 -6.2767 -0.0027 21 1 1.1112 -5.5125 1.2130 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 6.2093 0.8538 0.0110 26 1 7.7835 2.7426 0.0018 27 1 7.4493 5.6580 1.0292 28 1 8.1304 5.0849 -0.5123 29 1 6.7691 6.2316 -0.5124 30 1 4.5197 5.4919 0.0007 31 1 2.9257 3.6196 0.0002 32 1 4.5207 -4.1265 -0.0044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082419574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:33 Heat of formation + Delta-G solvation = 21.082158 kcal Electronic energy + Delta-G solvation = -15919.203865 eV Core-core repulsion = 13355.413161 eV Total energy + Delta-G solvation = -2563.790704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.60090 -37.46991 -34.53556 -32.60867 -30.38612 -30.18212 -28.17859 -26.85530 -23.97804 -22.54708 -21.96454 -20.11051 -18.64118 -17.31744 -15.99633 -15.71547 -14.79492 -14.48368 -14.21896 -13.50999 -13.43953 -13.22711 -12.81458 -12.53704 -12.16407 -11.95315 -11.81378 -11.79835 -11.71284 -11.57954 -10.99861 -10.94148 -10.71862 -10.51624 -10.33705 -10.00829 -9.37367 -8.45394 -8.32058 -8.04152 -7.69382 -7.23891 -6.92395 -4.69364 1.63953 2.07678 2.51777 2.76694 2.81396 2.98534 3.29263 3.47264 3.82690 4.00794 4.57138 4.96399 5.33728 5.34705 5.50528 5.65089 5.80177 5.82961 6.05111 6.11103 6.31173 6.33307 6.47280 6.53328 6.67602 6.69796 6.71624 6.80927 7.06323 7.17559 7.17985 7.39433 7.49849 7.68939 7.75790 8.08681 8.19559 9.49845 9.64007 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.036052 B = 0.005308 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.465656 B = 5273.588191 C = 6029.604988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.130 4.130 3 N -0.404 5.404 4 C -0.159 4.159 5 C 0.062 3.938 6 C -0.139 4.139 7 C -0.109 4.109 8 C -0.134 4.134 9 C -0.103 4.103 10 C -0.113 4.113 11 C -0.121 4.121 12 S 0.098 5.902 13 C 0.006 3.994 14 C -0.343 4.343 15 H 0.105 0.895 16 C 0.044 3.956 17 N -0.755 5.755 18 Si 0.941 3.059 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.257 1.257 22 H 0.040 0.960 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 2.938 -0.027 4.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.271 4.271 3 N -0.116 5.116 4 C -0.418 4.418 5 C 0.059 3.941 6 C -0.159 4.159 7 C -0.127 4.127 8 C -0.135 4.135 9 C -0.159 4.159 10 C -0.131 4.131 11 C -0.142 4.142 12 S 0.352 5.648 13 C -0.118 4.118 14 C -0.381 4.381 15 H 0.123 0.877 16 C -0.180 4.180 17 N -0.380 5.380 18 Si 0.763 3.237 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.181 1.181 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.003 2.948 -0.031 4.971 hybrid contribution -1.087 -0.873 0.022 1.394 sum 2.916 2.075 -0.008 3.579 Atomic orbital electron populations 1.19732 0.90049 1.00173 0.99626 1.19931 0.95852 0.86255 1.25090 1.65217 1.05276 1.32640 1.08451 1.24583 0.91665 0.96533 1.29053 1.17944 0.90964 0.90908 0.94283 1.21072 0.92326 0.98689 1.03830 1.20708 0.98628 0.91998 1.01366 1.19699 0.94129 0.94405 1.05243 1.20650 0.97795 0.96163 1.01336 1.20804 0.92592 0.98240 1.01495 1.21152 0.99676 0.91473 1.01886 1.84840 1.07158 0.97758 1.75090 1.23138 0.94431 0.97107 0.97124 1.19348 0.95948 0.88505 1.34267 0.87729 1.26395 0.94555 1.03953 0.93116 1.68991 1.03598 1.35846 1.29603 0.85750 0.79595 0.77675 0.80632 1.18153 1.19547 1.18145 0.94146 0.93589 0.92862 0.86515 0.86963 0.92168 0.92327 0.92348 0.87087 0.85998 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.77 10.02 36.01 0.36 -0.41 16 2 C -0.13 -3.33 6.84 -83.16 -0.57 -3.90 16 3 N -0.40 -10.63 10.02 -6.67 -0.07 -10.70 16 4 C -0.16 -4.06 7.33 -14.22 -0.10 -4.16 16 5 C 0.06 1.41 5.88 -104.97 -0.62 0.79 16 6 C -0.14 -2.81 9.60 -39.12 -0.38 -3.19 16 7 C -0.11 -1.87 9.68 -39.65 -0.38 -2.26 16 8 C -0.13 -2.18 5.89 -104.48 -0.62 -2.79 16 9 C -0.10 -1.25 10.00 36.01 0.36 -0.89 16 10 C -0.11 -1.96 9.68 -39.65 -0.38 -2.34 16 11 C -0.12 -2.49 9.68 -39.12 -0.38 -2.87 16 12 S 0.10 2.47 19.37 -107.50 -2.08 0.39 16 13 C 0.01 0.16 6.24 -38.79 -0.24 -0.08 16 14 C -0.34 -8.17 8.89 -38.31 -0.34 -8.51 16 15 H 0.10 2.28 6.86 -52.49 -0.36 1.92 16 16 C 0.04 0.97 5.50 -17.27 -0.09 0.87 16 17 N -0.76 -17.27 10.73 55.56 0.60 -16.68 16 18 Si 0.94 16.15 29.56 -169.99 -5.03 11.13 16 19 H -0.26 -4.36 7.11 56.52 0.40 -3.96 16 20 H -0.27 -4.52 7.11 56.52 0.40 -4.12 16 21 H -0.26 -4.36 7.11 56.52 0.40 -3.96 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.05 1.04 7.06 -51.93 -0.37 0.67 16 25 H 0.12 2.33 7.27 -52.49 -0.38 1.95 16 26 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 2.55 7.81 -52.48 -0.41 2.14 16 32 H 0.30 6.17 8.30 -40.82 -0.34 5.83 16 LS Contribution 290.25 15.07 4.37 4.37 Total: -1.00 -27.62 290.25 -9.19 -36.82 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.61 Total: 4.41 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -3.38 Total: -29.74 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.53 Total: -27.37 kcal Atomic # 14 Polarization: 16.15 SS G_CDS: -5.03 Total: 11.13 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.08 Total: 0.39 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.62 -9.19 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082419574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.897 kcal (2) G-P(sol) polarization free energy of solvation -27.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds