Wall clock time and date at job start Mon Mar 30 2020 07:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29946 * 122.56230 * 2 1 4 4 C 1.30886 * 117.58836 * 180.02562 * 3 2 1 5 5 C 1.47413 * 125.13498 * 180.02562 * 4 3 2 6 6 C 1.39838 * 120.16696 * 179.67571 * 5 4 3 7 7 C 1.37872 * 119.82858 * 179.74626 * 6 5 4 8 8 C 1.38426 * 120.16645 * 0.51149 * 7 6 5 9 9 C 1.50708 * 119.82997 * 179.74152 * 8 7 6 10 10 C 1.38425 * 120.33993 * 359.76518 * 8 7 6 11 11 C 1.37876 * 120.16662 * 359.97438 * 10 8 7 12 12 S 1.76085 * 109.72850 * 0.02562 * 4 3 2 13 13 C 1.38855 * 122.55957 * 180.02562 * 2 1 3 14 14 C 1.39747 * 126.10398 * 359.96420 * 13 2 1 15 15 H 1.08001 * 119.99689 * 359.97438 * 14 13 2 16 16 C 1.40132 * 119.99970 * 179.97438 * 14 13 2 17 17 N 1.30825 * 120.00132 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47026 * 60.00042 * 18 16 14 20 20 H 1.48500 * 109.47102 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46593 * 299.99835 * 18 16 14 22 22 H 1.08997 * 109.46748 * 269.97779 * 1 2 3 23 23 H 1.08998 * 109.47095 * 29.97750 * 1 2 3 24 24 H 1.09000 * 109.46910 * 149.97757 * 1 2 3 25 25 H 1.07998 * 120.08043 * 359.97438 * 6 5 4 26 26 H 1.08001 * 119.91645 * 180.25691 * 7 6 5 27 27 H 1.09002 * 109.47129 * 270.02178 * 9 8 7 28 28 H 1.09002 * 109.46770 * 30.02472 * 9 8 7 29 29 H 1.08996 * 109.47023 * 150.02165 * 9 8 7 30 30 H 1.08001 * 119.91226 * 179.97438 * 10 8 7 31 31 H 1.08004 * 120.08428 * 179.97438 * 11 10 8 32 32 H 0.96998 * 120.00500 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2064 1.0952 0.0000 4 6 3.5104 0.9817 -0.0005 5 6 4.4601 2.1092 -0.0001 6 6 5.8374 1.8677 0.0061 7 6 6.7194 2.9274 0.0012 8 6 6.2446 4.2277 0.0009 9 6 7.2155 5.3803 0.0014 10 6 4.8826 4.4747 0.0005 11 6 3.9881 3.4254 0.0000 12 16 3.9588 -0.7211 -0.0018 13 6 2.2543 -1.1703 -0.0005 14 6 1.7459 -2.4720 -0.0004 15 1 0.6782 -2.6346 0.0006 16 6 2.6213 -3.5662 -0.0015 17 7 3.9147 -3.3692 -0.0032 18 14 1.9417 -5.3062 -0.0006 19 1 1.1080 -5.5126 -1.2121 20 1 3.0657 -6.2767 -0.0027 21 1 1.1112 -5.5125 1.2130 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 6.2093 0.8538 0.0110 26 1 7.7835 2.7426 0.0018 27 1 7.4493 5.6580 1.0292 28 1 8.1304 5.0849 -0.5123 29 1 6.7691 6.2316 -0.5124 30 1 4.5197 5.4919 0.0007 31 1 2.9257 3.6196 0.0002 32 1 4.5207 -4.1265 -0.0044 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082419574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:32 Heat of formation + Delta-G solvation = 7.160515 kcal Electronic energy + Delta-G solvation = -15919.807553 eV Core-core repulsion = 13355.413161 eV Total energy + Delta-G solvation = -2564.394391 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12984 -39.23156 -36.28194 -34.06050 -32.00579 -31.71668 -29.93172 -28.21488 -25.73858 -24.15311 -23.45399 -21.64791 -20.42930 -19.09317 -17.64723 -17.47187 -16.29026 -15.96064 -15.65781 -15.20524 -14.98156 -14.45788 -14.28211 -14.12915 -13.79822 -13.65789 -13.33299 -13.22405 -13.19200 -12.91750 -12.56011 -12.48734 -12.11965 -12.01250 -11.77860 -11.57586 -11.25609 -10.12668 -9.91949 -9.79298 -9.50055 -8.96743 -8.73506 -6.52279 0.01877 0.59490 0.90584 1.34389 1.42523 1.52809 1.55701 1.86672 2.10723 2.31679 2.90866 3.21338 3.86109 4.09040 4.14482 4.24025 4.54993 4.62808 4.68695 4.76554 4.81676 4.93483 4.94681 5.00629 5.02926 5.11125 5.24378 5.34848 5.38977 5.57292 5.73760 5.77733 5.83892 5.96837 6.23680 6.28940 6.38552 7.75281 7.84413 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.036052 B = 0.005308 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.465656 B = 5273.588191 C = 6029.604988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.169 4.169 3 N -0.426 5.426 4 C -0.175 4.175 5 C 0.020 3.980 6 C -0.149 4.149 7 C -0.108 4.108 8 C -0.119 4.119 9 C -0.101 4.101 10 C -0.112 4.112 11 C -0.135 4.135 12 S 0.070 5.930 13 C -0.024 4.024 14 C -0.358 4.358 15 H 0.121 0.879 16 C 0.007 3.993 17 N -0.780 5.780 18 Si 1.019 2.981 19 H -0.250 1.250 20 H -0.261 1.261 21 H -0.250 1.250 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.146 0.854 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.107 0.893 32 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 3.224 -0.033 5.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.309 4.309 3 N -0.138 5.138 4 C -0.435 4.435 5 C 0.017 3.983 6 C -0.169 4.169 7 C -0.126 4.126 8 C -0.119 4.119 9 C -0.158 4.158 10 C -0.129 4.129 11 C -0.155 4.155 12 S 0.323 5.677 13 C -0.148 4.148 14 C -0.395 4.395 15 H 0.139 0.861 16 C -0.215 4.215 17 N -0.405 5.405 18 Si 0.836 3.164 19 H -0.174 1.174 20 H -0.185 1.185 21 H -0.174 1.174 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.126 0.874 26 H 0.164 0.836 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.162 0.838 31 H 0.125 0.875 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.007 3.260 -0.036 5.974 hybrid contribution -1.242 -0.854 0.026 1.508 sum 3.764 2.405 -0.010 4.467 Atomic orbital electron populations 1.19727 0.87650 1.00998 1.00373 1.20556 0.97706 0.86190 1.26421 1.65264 1.05810 1.33197 1.09537 1.25141 0.92061 0.97274 1.29004 1.18147 0.91644 0.91006 0.97551 1.21156 0.91918 0.99469 1.04369 1.21106 0.99850 0.91626 1.00030 1.20269 0.94533 0.95513 1.01610 1.20747 0.97319 0.94730 1.02970 1.21162 0.92817 0.98773 1.00193 1.21175 0.99707 0.91760 1.02902 1.84629 1.08102 0.98664 1.76304 1.23522 0.94430 0.98322 0.98493 1.19834 0.97250 0.88484 1.33921 0.86122 1.27501 0.94443 1.07928 0.91629 1.69031 1.05008 1.37726 1.28753 0.84643 0.79115 0.71743 0.80940 1.17376 1.18511 1.17404 0.93328 0.93108 0.91560 0.87398 0.83617 0.90424 0.90549 0.90617 0.83835 0.87514 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.22 10.02 71.24 0.71 -0.51 16 2 C -0.17 -9.03 6.84 42.99 0.29 -8.73 16 3 N -0.43 -23.64 10.02 -175.01 -1.75 -25.40 16 4 C -0.17 -9.42 7.33 87.25 0.64 -8.78 16 5 C 0.02 0.93 5.88 -20.09 -0.12 0.82 16 6 C -0.15 -6.12 9.60 22.57 0.22 -5.91 16 7 C -0.11 -3.51 9.68 22.23 0.22 -3.29 16 8 C -0.12 -3.48 5.89 -19.77 -0.12 -3.60 16 9 C -0.10 -1.97 10.00 71.24 0.71 -1.26 16 10 C -0.11 -3.65 9.68 22.23 0.22 -3.44 16 11 C -0.13 -5.64 9.68 22.57 0.22 -5.42 16 12 S 0.07 3.71 19.37 -56.49 -1.09 2.61 16 13 C -0.02 -1.29 6.24 22.78 0.14 -1.15 16 14 C -0.36 -17.27 8.89 23.09 0.21 -17.07 16 15 H 0.12 5.24 6.86 -2.91 -0.02 5.22 16 16 C 0.01 0.29 5.50 85.30 0.47 0.76 16 17 N -0.78 -36.08 10.73 21.87 0.23 -35.85 16 18 Si 1.02 31.79 29.56 68.60 2.03 33.82 16 19 H -0.25 -7.50 7.11 99.48 0.71 -6.80 16 20 H -0.26 -7.68 7.11 99.48 0.71 -6.98 16 21 H -0.25 -7.53 7.11 99.48 0.71 -6.82 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.07 2.61 7.06 -2.39 -0.02 2.59 16 25 H 0.11 4.50 7.27 -2.91 -0.02 4.48 16 26 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 29 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 30 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.11 4.68 7.81 -2.91 -0.02 4.66 16 32 H 0.31 12.75 8.30 -92.71 -0.77 11.98 16 Total: -1.00 -63.24 290.25 4.35 -58.89 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 1.13 Total: 23.50 kcal Atomic # 6 Polarization: -61.38 SS G_CDS: 3.81 Total: -57.58 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -1.52 Total: -61.25 kcal Atomic # 14 Polarization: 31.79 SS G_CDS: 2.03 Total: 33.82 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.09 Total: 2.61 kcal Total: -63.24 4.35 -58.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082419574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.054 kcal (2) G-P(sol) polarization free energy of solvation -63.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds