Wall clock time and date at job start Mon Mar 30 2020 07:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46894 * 109.47226 * 2 1 4 4 C 1.46895 * 111.00332 * 199.53251 * 3 2 1 5 5 C 1.50698 * 109.47485 * 66.04876 * 4 3 2 6 6 H 1.08000 * 119.99371 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00545 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99611 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00356 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47220 * 59.99610 * 9 7 5 11 11 H 1.48501 * 109.47296 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47036 * 299.99667 * 9 7 5 13 13 C 1.38678 * 111.00049 * 75.57531 * 3 2 1 14 14 N 1.32935 * 120.53050 * 58.76258 * 13 3 2 15 15 C 1.31900 * 120.69891 * 179.71919 * 14 13 3 16 16 Cl 1.73597 * 119.07772 * 180.28655 * 15 14 13 17 17 N 1.31874 * 121.84414 * 0.56912 * 15 14 13 18 18 C 1.32580 * 121.00789 * 359.72290 * 17 15 14 19 19 C 1.38262 * 119.18819 * 359.97438 * 18 17 15 20 20 F 1.35100 * 120.83803 * 179.97438 * 19 18 17 21 21 H 1.08992 * 109.47241 * 64.86899 * 1 2 3 22 22 H 1.09002 * 109.47094 * 184.87036 * 1 2 3 23 23 H 1.08996 * 109.46635 * 304.86421 * 1 2 3 24 24 H 1.09006 * 109.46587 * 240.00429 * 2 1 3 25 25 H 1.08996 * 109.47286 * 120.00676 * 2 1 3 26 26 H 1.09003 * 109.47169 * 186.05314 * 4 3 2 27 27 H 1.09003 * 109.47050 * 306.04537 * 4 3 2 28 28 H 0.96996 * 119.99810 * 180.02562 * 8 7 5 29 29 H 1.07997 * 120.40670 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4137 1.4505 -0.4585 5 6 3.4854 1.0450 -1.9081 6 1 2.5854 0.7661 -2.4359 7 6 4.7000 1.0291 -2.5604 8 7 5.7961 1.3683 -1.9175 9 14 4.7889 0.5258 -4.3570 10 1 3.9566 1.4477 -5.1711 11 1 6.1982 0.5922 -4.8206 12 1 4.2826 -0.8620 -4.5079 13 6 1.8813 1.9610 1.2538 14 7 2.4731 1.4205 2.3144 15 6 2.3482 1.9687 3.5076 16 17 3.1452 1.2317 4.8623 17 7 1.6304 3.0579 3.7011 18 6 1.0055 3.6520 2.6940 19 6 1.1128 3.1164 1.4239 20 9 0.4896 3.6942 0.3737 21 1 -0.3633 0.4364 -0.9303 22 1 -0.3633 -1.0240 0.0873 23 1 -0.3632 0.5874 0.8432 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.7853 2.4692 -0.3473 27 1 4.0248 0.7737 0.1388 28 1 6.6505 1.3575 -2.3764 29 1 0.4199 4.5434 2.8636 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085755377.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:47 Heat of formation + Delta-G solvation = 9.586942 kcal Electronic energy + Delta-G solvation = -17239.970139 eV Core-core repulsion = 14139.327691 eV Total energy + Delta-G solvation = -3100.642448 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.75694 -40.99737 -37.50776 -36.72725 -33.39592 -32.66681 -31.14859 -29.97807 -26.93624 -24.56754 -23.69456 -22.67180 -20.94529 -18.47125 -17.46553 -17.26477 -16.49157 -16.10521 -15.11419 -14.80148 -14.47393 -14.42446 -14.03923 -13.59580 -12.96329 -12.62044 -12.30893 -11.84058 -11.70814 -11.56188 -11.44167 -11.19951 -11.04360 -10.78245 -10.56003 -10.47580 -10.06334 -9.58633 -9.25907 -8.94368 -8.60583 -7.96696 -6.14955 -4.18674 0.63317 0.84620 1.42115 3.27995 3.32458 3.34430 3.46943 3.64198 3.97541 4.23880 4.39526 4.78553 4.83714 5.16020 5.21350 5.56751 5.71865 5.85124 6.11531 6.23955 6.45978 6.58850 6.70139 6.96096 7.12273 7.55805 7.63817 7.77906 7.91386 8.23879 8.86303 9.45622 10.95822 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.022442 B = 0.006450 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.349614 B = 4340.054956 C = 4787.589004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.485 5.485 4 C 0.202 3.798 5 C -0.516 4.516 6 H 0.068 0.932 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.361 3.639 14 N -0.508 5.508 15 C 0.359 3.641 16 Cl 0.020 6.980 17 N -0.497 5.497 18 C 0.131 3.869 19 C 0.021 3.979 20 F -0.102 7.102 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.037 0.963 24 H 0.102 0.898 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 1.359 9.201 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 N -0.209 5.209 4 C 0.079 3.921 5 C -0.555 4.555 6 H 0.086 0.914 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.122 3.878 14 N -0.228 5.228 15 C 0.064 3.936 16 Cl 0.048 6.952 17 N -0.214 5.214 18 C -0.034 4.034 19 C -0.005 4.005 20 F -0.081 7.081 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.120 0.880 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.789 1.157 9.672 13.120 hybrid contribution 0.306 -0.176 -1.131 1.185 sum -8.483 0.980 8.541 12.078 Atomic orbital electron populations 1.21803 0.96043 1.00736 1.01711 1.22164 0.94398 0.87329 1.03215 1.60611 1.27426 1.19900 1.12986 1.19891 0.78130 0.97773 0.96286 1.20990 0.93739 1.46121 0.94630 0.91379 1.24974 0.95388 0.95172 0.98714 1.69954 0.98622 1.47653 1.36966 0.86468 0.77026 0.79171 0.84236 1.20016 1.21244 1.20062 1.20833 0.87216 0.89826 0.89926 1.68304 1.21603 1.34401 0.98507 1.22872 0.93151 0.89398 0.88185 1.98422 1.76733 1.80376 1.39649 1.67884 1.09553 1.09322 1.34681 1.23211 0.95577 0.98890 0.85729 1.19286 0.98990 0.95846 0.86401 1.91569 1.79223 1.82517 1.54761 0.91737 0.92481 0.94418 0.87976 0.93650 0.95222 0.96687 0.92557 0.79500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.07 37.16 0.37 -1.88 15 2 C 0.06 1.05 5.49 -3.83 -0.02 1.03 15 3 N -0.48 -10.38 4.31 -174.30 -0.75 -11.13 15 4 C 0.20 5.18 4.55 -4.98 -0.02 5.15 15 5 C -0.52 -13.95 8.24 -34.44 -0.28 -14.23 15 6 H 0.07 1.79 7.31 -52.49 -0.38 1.40 15 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 8 N -0.89 -25.99 13.29 55.43 0.74 -25.25 15 9 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 15 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 13 C 0.36 7.01 4.58 -154.63 -0.71 6.30 15 14 N -0.51 -9.74 9.56 -10.81 -0.10 -9.85 15 15 C 0.36 6.06 8.18 -91.99 -0.75 5.31 15 16 Cl 0.02 0.30 29.27 -51.86 -1.52 -1.22 15 17 N -0.50 -7.60 10.40 -11.68 -0.12 -7.72 15 18 C 0.13 1.78 11.28 -17.22 -0.19 1.59 15 19 C 0.02 0.35 7.39 -38.99 -0.29 0.06 15 20 F -0.10 -1.71 17.16 2.25 0.04 -1.67 15 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.04 0.57 7.60 -51.93 -0.39 0.18 15 24 H 0.10 2.06 6.58 -51.93 -0.34 1.72 15 25 H 0.05 0.87 7.43 -51.93 -0.39 0.48 15 26 H 0.03 0.83 8.05 -51.93 -0.42 0.41 15 27 H 0.02 0.42 8.12 -51.93 -0.42 0.00 15 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 29 H 0.19 1.69 8.06 -52.49 -0.42 1.27 15 LS Contribution 277.81 15.07 4.19 4.19 Total: -1.00 -29.16 277.81 -7.29 -36.45 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: -2.75 Total: -4.66 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.99 Total: 4.89 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.24 Total: -53.96 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.52 Total: -1.22 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.16 -7.29 -36.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085755377.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.039 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds