Wall clock time and date at job start Mon Mar 30 2020 07:01:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46894 * 109.47226 * 2 1
4 4 C 1.46895 * 111.00332 * 199.53251 * 3 2 1
5 5 C 1.50698 * 109.47485 * 66.04876 * 4 3 2
6 6 H 1.08000 * 119.99371 * 359.97438 * 5 4 3
7 7 C 1.37874 * 120.00545 * 180.02562 * 5 4 3
8 8 N 1.31519 * 119.99611 * 359.97438 * 7 5 4
9 9 Si 1.86792 * 120.00356 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.47220 * 59.99610 * 9 7 5
11 11 H 1.48501 * 109.47296 * 179.97438 * 9 7 5
12 12 H 1.48500 * 109.47036 * 299.99667 * 9 7 5
13 13 C 1.38678 * 111.00049 * 75.57531 * 3 2 1
14 14 N 1.32935 * 120.53050 * 58.76258 * 13 3 2
15 15 C 1.31900 * 120.69891 * 179.71919 * 14 13 3
16 16 Cl 1.73597 * 119.07772 * 180.28655 * 15 14 13
17 17 N 1.31874 * 121.84414 * 0.56912 * 15 14 13
18 18 C 1.32580 * 121.00789 * 359.72290 * 17 15 14
19 19 C 1.38262 * 119.18819 * 359.97438 * 18 17 15
20 20 F 1.35100 * 120.83803 * 179.97438 * 19 18 17
21 21 H 1.08992 * 109.47241 * 64.86899 * 1 2 3
22 22 H 1.09002 * 109.47094 * 184.87036 * 1 2 3
23 23 H 1.08996 * 109.46635 * 304.86421 * 1 2 3
24 24 H 1.09006 * 109.46587 * 240.00429 * 2 1 3
25 25 H 1.08996 * 109.47286 * 120.00676 * 2 1 3
26 26 H 1.09003 * 109.47169 * 186.05314 * 4 3 2
27 27 H 1.09003 * 109.47050 * 306.04537 * 4 3 2
28 28 H 0.96996 * 119.99810 * 180.02562 * 8 7 5
29 29 H 1.07997 * 120.40670 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 3.4137 1.4505 -0.4585
5 6 3.4854 1.0450 -1.9081
6 1 2.5854 0.7661 -2.4359
7 6 4.7000 1.0291 -2.5604
8 7 5.7961 1.3683 -1.9175
9 14 4.7889 0.5258 -4.3570
10 1 3.9566 1.4477 -5.1711
11 1 6.1982 0.5922 -4.8206
12 1 4.2826 -0.8620 -4.5079
13 6 1.8813 1.9610 1.2538
14 7 2.4731 1.4205 2.3144
15 6 2.3482 1.9687 3.5076
16 17 3.1452 1.2317 4.8623
17 7 1.6304 3.0579 3.7011
18 6 1.0055 3.6520 2.6940
19 6 1.1128 3.1164 1.4239
20 9 0.4896 3.6942 0.3737
21 1 -0.3633 0.4364 -0.9303
22 1 -0.3633 -1.0240 0.0873
23 1 -0.3632 0.5874 0.8432
24 1 1.8933 -0.5138 -0.8901
25 1 1.8934 -0.5139 0.8899
26 1 3.7853 2.4692 -0.3473
27 1 4.0248 0.7737 0.1388
28 1 6.6505 1.3575 -2.3764
29 1 0.4199 4.5434 2.8636
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000085755377.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:01:47
Heat of formation + Delta-G solvation = 9.586942 kcal
Electronic energy + Delta-G solvation = -17239.970139 eV
Core-core repulsion = 14139.327691 eV
Total energy + Delta-G solvation = -3100.642448 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 259.058 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-48.75694 -40.99737 -37.50776 -36.72725 -33.39592 -32.66681 -31.14859 -29.97807
-26.93624 -24.56754 -23.69456 -22.67180 -20.94529 -18.47125 -17.46553 -17.26477
-16.49157 -16.10521 -15.11419 -14.80148 -14.47393 -14.42446 -14.03923 -13.59580
-12.96329 -12.62044 -12.30893 -11.84058 -11.70814 -11.56188 -11.44167 -11.19951
-11.04360 -10.78245 -10.56003 -10.47580 -10.06334 -9.58633 -9.25907 -8.94368
-8.60583 -7.96696 -6.14955 -4.18674 0.63317 0.84620 1.42115 3.27995
3.32458 3.34430 3.46943 3.64198 3.97541 4.23880 4.39526 4.78553
4.83714 5.16020 5.21350 5.56751 5.71865 5.85124 6.11531 6.23955
6.45978 6.58850 6.70139 6.96096 7.12273 7.55805 7.63817 7.77906
7.91386 8.23879 8.86303 9.45622 10.95822
Molecular weight = 259.06amu
Principal moments of inertia in cm(-1)
A = 0.022442 B = 0.006450 C = 0.005847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1247.349614 B = 4340.054956 C = 4787.589004
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.055 3.945
3 N -0.485 5.485
4 C 0.202 3.798
5 C -0.516 4.516
6 H 0.068 0.932
7 C 0.060 3.940
8 N -0.894 5.894
9 Si 0.904 3.096
10 H -0.275 1.275
11 H -0.287 1.287
12 H -0.275 1.275
13 C 0.361 3.639
14 N -0.508 5.508
15 C 0.359 3.641
16 Cl 0.020 6.980
17 N -0.497 5.497
18 C 0.131 3.869
19 C 0.021 3.979
20 F -0.102 7.102
21 H 0.064 0.936
22 H 0.056 0.944
23 H 0.037 0.963
24 H 0.102 0.898
25 H 0.045 0.955
26 H 0.030 0.970
27 H 0.015 0.985
28 H 0.265 0.735
29 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.228 1.359 9.201 13.102
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.071 4.071
3 N -0.209 5.209
4 C 0.079 3.921
5 C -0.555 4.555
6 H 0.086 0.914
7 C -0.142 4.142
8 N -0.532 5.532
9 Si 0.731 3.269
10 H -0.200 1.200
11 H -0.212 1.212
12 H -0.201 1.201
13 C 0.122 3.878
14 N -0.228 5.228
15 C 0.064 3.936
16 Cl 0.048 6.952
17 N -0.214 5.214
18 C -0.034 4.034
19 C -0.005 4.005
20 F -0.081 7.081
21 H 0.083 0.917
22 H 0.075 0.925
23 H 0.056 0.944
24 H 0.120 0.880
25 H 0.063 0.937
26 H 0.048 0.952
27 H 0.033 0.967
28 H 0.074 0.926
29 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges -8.789 1.157 9.672 13.120
hybrid contribution 0.306 -0.176 -1.131 1.185
sum -8.483 0.980 8.541 12.078
Atomic orbital electron populations
1.21803 0.96043 1.00736 1.01711 1.22164 0.94398 0.87329 1.03215
1.60611 1.27426 1.19900 1.12986 1.19891 0.78130 0.97773 0.96286
1.20990 0.93739 1.46121 0.94630 0.91379 1.24974 0.95388 0.95172
0.98714 1.69954 0.98622 1.47653 1.36966 0.86468 0.77026 0.79171
0.84236 1.20016 1.21244 1.20062 1.20833 0.87216 0.89826 0.89926
1.68304 1.21603 1.34401 0.98507 1.22872 0.93151 0.89398 0.88185
1.98422 1.76733 1.80376 1.39649 1.67884 1.09553 1.09322 1.34681
1.23211 0.95577 0.98890 0.85729 1.19286 0.98990 0.95846 0.86401
1.91569 1.79223 1.82517 1.54761 0.91737 0.92481 0.94418 0.87976
0.93650 0.95222 0.96687 0.92557 0.79500
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.25 10.07 37.16 0.37 -1.88 15
2 C 0.06 1.05 5.49 -3.83 -0.02 1.03 15
3 N -0.48 -10.38 4.31 -174.30 -0.75 -11.13 15
4 C 0.20 5.18 4.55 -4.98 -0.02 5.15 15
5 C -0.52 -13.95 8.24 -34.44 -0.28 -14.23 15
6 H 0.07 1.79 7.31 -52.49 -0.38 1.40 15
7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15
8 N -0.89 -25.99 13.29 55.43 0.74 -25.25 15
9 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 15
10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15
11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15
12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15
13 C 0.36 7.01 4.58 -154.63 -0.71 6.30 15
14 N -0.51 -9.74 9.56 -10.81 -0.10 -9.85 15
15 C 0.36 6.06 8.18 -91.99 -0.75 5.31 15
16 Cl 0.02 0.30 29.27 -51.86 -1.52 -1.22 15
17 N -0.50 -7.60 10.40 -11.68 -0.12 -7.72 15
18 C 0.13 1.78 11.28 -17.22 -0.19 1.59 15
19 C 0.02 0.35 7.39 -38.99 -0.29 0.06 15
20 F -0.10 -1.71 17.16 2.25 0.04 -1.67 15
21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15
22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15
23 H 0.04 0.57 7.60 -51.93 -0.39 0.18 15
24 H 0.10 2.06 6.58 -51.93 -0.34 1.72 15
25 H 0.05 0.87 7.43 -51.93 -0.39 0.48 15
26 H 0.03 0.83 8.05 -51.93 -0.42 0.41 15
27 H 0.02 0.42 8.12 -51.93 -0.42 0.00 15
28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15
29 H 0.19 1.69 8.06 -52.49 -0.42 1.27 15
LS Contribution 277.81 15.07 4.19 4.19
Total: -1.00 -29.16 277.81 -7.29 -36.45
By element:
Atomic # 1 Polarization: -1.91 SS G_CDS: -2.75 Total: -4.66 kcal
Atomic # 6 Polarization: 6.89 SS G_CDS: -1.99 Total: 4.89 kcal
Atomic # 7 Polarization: -53.72 SS G_CDS: -0.24 Total: -53.96 kcal
Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal
Atomic # 17 Polarization: 0.30 SS G_CDS: -1.52 Total: -1.22 kcal
Total LS contribution 4.19 Total: 4.19 kcal
Total: -29.16 -7.29 -36.45 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085755377.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.039 kcal
(2) G-P(sol) polarization free energy of solvation -29.158 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.587 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds