Wall clock time and date at job start Mon Mar 30 2020 07:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47148 * 2 1 4 4 C 1.50700 * 109.47113 * 119.99957 * 2 1 3 5 5 H 1.08003 * 120.00235 * 120.00258 * 4 2 1 6 6 C 1.37879 * 119.99736 * 300.00272 * 4 2 1 7 7 N 1.31509 * 120.00185 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99543 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47451 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47276 * 119.99780 * 8 6 4 11 11 H 1.48506 * 109.46979 * 239.99676 * 8 6 4 12 12 N 1.46896 * 109.46898 * 240.00045 * 2 1 3 13 13 C 1.46904 * 111.00125 * 292.26421 * 12 2 1 14 14 C 1.38682 * 110.99984 * 168.31573 * 12 2 1 15 15 N 1.32931 * 120.53151 * 16.02145 * 14 12 2 16 16 C 1.31898 * 120.70039 * 179.71995 * 15 14 12 17 17 Cl 1.73593 * 119.08199 * 180.26916 * 16 15 14 18 18 N 1.31880 * 121.84076 * 0.57449 * 16 15 14 19 19 C 1.32578 * 121.01090 * 359.71867 * 18 16 15 20 20 C 1.38271 * 119.18589 * 359.97438 * 19 18 16 21 21 F 1.35099 * 120.83692 * 180.02562 * 20 19 18 22 22 H 1.08994 * 109.47056 * 66.44161 * 1 2 3 23 23 H 1.08999 * 109.46875 * 186.43888 * 1 2 3 24 24 H 1.09004 * 109.46902 * 306.43589 * 1 2 3 25 25 H 0.97006 * 119.99619 * 180.02562 * 7 6 4 26 26 H 1.08995 * 109.47027 * 60.00390 * 13 12 2 27 27 H 1.09003 * 109.46688 * 300.00150 * 13 12 2 28 28 H 1.08996 * 109.47221 * 180.02562 * 13 12 2 29 29 H 1.07995 * 120.41060 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1475 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 1.7052 -2.1264 -1.1447 14 6 3.3807 -0.4884 -1.3703 15 7 4.1255 -0.0285 -0.3699 16 6 5.4212 0.1616 -0.5271 17 17 6.3549 0.7571 0.8096 18 7 6.0261 -0.0824 -1.6733 19 6 5.3502 -0.5375 -2.7191 20 6 3.9904 -0.7578 -2.5992 21 9 3.2693 -1.2214 -3.6433 22 1 -0.3633 0.4107 -0.9420 23 1 -0.3633 -1.0212 0.1152 24 1 -0.3633 0.6104 0.8268 25 1 0.7095 1.1618 3.4844 26 1 0.6253 -2.2594 -1.0808 27 1 2.1783 -2.5689 -0.2680 28 1 2.0792 -2.6150 -2.0444 29 1 5.8554 -0.7337 -3.6533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085785886.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:36 Heat of formation + Delta-G solvation = 5.015931 kcal Electronic energy + Delta-G solvation = -17710.561200 eV Core-core repulsion = 14609.720538 eV Total energy + Delta-G solvation = -3100.840662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.01117 -42.17663 -39.18277 -37.87291 -35.08442 -34.16569 -32.27208 -30.59323 -27.58484 -27.20878 -25.57154 -24.37543 -21.83806 -19.48400 -19.00514 -18.50386 -18.31055 -17.26695 -16.89606 -16.42969 -15.68974 -15.51945 -15.27527 -14.99663 -14.47012 -14.21413 -13.43681 -13.08778 -12.87504 -12.82389 -12.78329 -12.58517 -12.52236 -12.39850 -12.18666 -11.97287 -11.86393 -11.29303 -10.47797 -10.38549 -10.29104 -9.39501 -8.04578 -6.13338 -0.53708 -0.16297 0.33915 1.37103 1.41356 1.48865 2.31440 2.42403 2.45033 2.89407 3.09223 3.25197 3.59951 3.66656 4.04707 4.41167 4.59947 4.75930 4.95542 5.01789 5.03053 5.08930 5.40048 5.53325 5.69000 5.79994 6.01768 6.19191 6.28021 6.74853 6.89523 7.50786 8.99520 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.010399 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.210742 B = 2691.881638 C = 3849.556061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.219 3.781 3 H 0.009 0.991 4 C -0.499 4.499 5 H 0.048 0.952 6 C 0.025 3.975 7 N -0.917 5.917 8 Si 0.938 3.062 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.280 1.280 12 N -0.481 5.481 13 C 0.041 3.959 14 C 0.338 3.662 15 N -0.506 5.506 16 C 0.352 3.648 17 Cl 0.023 6.977 18 N -0.510 5.510 19 C 0.160 3.840 20 C -0.014 4.014 21 F -0.107 7.107 22 H 0.033 0.967 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.259 0.741 26 H 0.090 0.910 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.970 -4.219 -9.870 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.114 3.886 3 H 0.027 0.973 4 C -0.538 4.538 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.558 5.558 8 Si 0.765 3.235 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.205 1.205 12 N -0.199 5.199 13 C -0.105 4.105 14 C 0.096 3.904 15 N -0.227 5.227 16 C 0.057 3.943 17 Cl 0.051 6.949 18 N -0.229 5.229 19 C -0.005 4.005 20 C -0.041 4.041 21 F -0.085 7.085 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.134 -3.554 -9.273 12.227 hybrid contribution -0.041 -0.567 1.219 1.345 sum 7.092 -4.121 -8.053 11.495 Atomic orbital electron populations 1.21633 0.95958 1.00505 0.99600 1.19127 0.92870 0.92735 0.83892 0.97269 1.21400 1.29347 1.11734 0.91321 0.93352 1.25360 0.95435 0.95571 1.00975 1.69989 1.38207 1.23968 1.23600 0.85818 0.78110 0.78694 0.80853 1.19941 1.21315 1.20544 1.59925 1.05508 1.13651 1.40802 1.22386 1.03548 0.83475 1.01057 1.20754 0.90910 0.90676 0.88011 1.68531 1.05646 1.16396 1.32111 1.23119 0.86894 0.94875 0.89393 1.98409 1.69829 1.84964 1.41696 1.68013 1.39970 1.16000 0.98890 1.23855 0.87904 0.90206 0.98516 1.19039 0.92546 1.07385 0.85163 1.91527 1.77401 1.85907 1.53695 0.94816 0.94079 0.91841 0.93176 0.89116 0.94490 0.90083 0.74695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.68 71.98 0.62 -4.83 15 2 C 0.22 10.71 1.97 44.17 0.09 10.80 15 3 H 0.01 0.53 7.80 -2.39 -0.02 0.51 15 4 C -0.50 -26.05 6.20 25.60 0.16 -25.89 15 5 H 0.05 2.57 6.03 -2.91 -0.02 2.56 15 6 C 0.03 1.38 5.30 84.66 0.45 1.83 15 7 N -0.92 -51.86 11.39 21.45 0.24 -51.61 15 8 Si 0.94 43.90 29.54 68.60 2.03 45.93 15 9 H -0.27 -12.68 7.11 99.48 0.71 -11.97 15 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 15 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 12 N -0.48 -19.74 4.60 -706.00 -3.25 -22.99 15 13 C 0.04 1.43 8.78 127.69 1.12 2.55 15 14 C 0.34 13.25 5.82 133.18 0.77 14.02 15 15 N -0.51 -21.80 7.74 -188.12 -1.46 -23.26 15 16 C 0.35 13.15 8.18 180.83 1.48 14.63 15 17 Cl 0.02 0.81 29.27 -2.72 -0.08 0.73 15 18 N -0.51 -15.81 10.40 -190.86 -1.98 -17.79 15 19 C 0.16 3.98 11.28 84.59 0.95 4.94 15 20 C -0.01 -0.42 7.06 22.66 0.16 -0.26 15 21 F -0.11 -2.95 16.28 44.97 0.73 -2.21 15 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 15 23 H 0.04 1.77 6.91 -2.39 -0.02 1.75 15 24 H 0.06 3.26 6.27 -2.38 -0.01 3.24 15 25 H 0.26 14.08 8.31 -92.70 -0.77 13.31 15 26 H 0.09 3.01 6.67 -2.39 -0.02 3.00 15 27 H 0.04 1.43 6.04 -2.39 -0.01 1.42 15 28 H 0.08 2.37 7.05 -2.39 -0.02 2.35 15 29 H 0.24 3.19 8.06 -2.91 -0.02 3.16 15 Total: -1.00 -60.79 265.09 3.24 -57.55 By element: Atomic # 1 Polarization: -5.31 SS G_CDS: 1.19 Total: -4.12 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 5.81 Total: 17.77 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -6.44 Total: -115.65 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.73 Total: -2.21 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: 0.81 SS G_CDS: -0.08 Total: 0.73 kcal Total: -60.79 3.24 -57.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085785886.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.568 kcal (2) G-P(sol) polarization free energy of solvation -60.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds