Wall clock time and date at job start Mon Mar 30 2020 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47134 * 2 1 4 4 C 1.50704 * 109.47429 * 239.99833 * 2 1 3 5 5 H 1.07996 * 120.00224 * 240.00383 * 4 2 1 6 6 C 1.37877 * 119.99576 * 59.99546 * 4 2 1 7 7 N 1.31516 * 120.00122 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00060 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47490 * 90.00043 * 8 6 4 10 10 H 1.48497 * 109.47354 * 210.00388 * 8 6 4 11 11 H 1.48502 * 109.46892 * 330.00348 * 8 6 4 12 12 N 1.46902 * 109.47316 * 120.00148 * 2 1 3 13 13 C 1.46894 * 111.00075 * 58.95498 * 12 2 1 14 14 C 1.38678 * 110.99796 * 294.99873 * 12 2 1 15 15 N 1.32929 * 120.53333 * 0.02562 * 14 12 2 16 16 C 1.31902 * 120.69870 * 179.97438 * 15 14 12 17 17 Cl 1.73602 * 119.07771 * 180.28770 * 16 15 14 18 18 N 1.31874 * 121.84309 * 0.02562 * 16 15 14 19 19 C 1.32579 * 121.01137 * 0.02562 * 18 16 15 20 20 C 1.38267 * 119.18516 * 359.97438 * 19 18 16 21 21 F 1.35101 * 120.83554 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47337 * 60.00316 * 1 2 3 23 23 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47191 * 299.99660 * 1 2 3 25 25 H 0.97007 * 120.00025 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46872 * 296.04033 * 13 12 2 27 27 H 1.08997 * 109.47356 * 56.04515 * 13 12 2 28 28 H 1.09006 * 109.47315 * 176.05255 * 13 12 2 29 29 H 1.07992 * 120.40356 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0196 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6695 -0.0018 2.3498 15 7 0.9787 1.1313 2.2733 16 6 0.6435 1.7907 3.3654 17 17 -0.2654 3.2623 3.2170 18 7 0.9751 1.3606 4.5672 19 6 1.6646 0.2394 4.7252 20 6 2.0381 -0.4855 3.6086 21 9 2.7417 -1.6324 3.7310 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7093 1.1617 -3.4844 26 1 0.4420 -2.0731 1.3348 27 1 1.8167 -2.5950 0.3318 28 1 1.9617 -2.5869 2.1059 29 1 1.9306 -0.1039 5.7140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085785888.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:39 Heat of formation + Delta-G solvation = 24.919680 kcal Electronic energy + Delta-G solvation = -17547.722891 eV Core-core repulsion = 14447.745320 eV Total energy + Delta-G solvation = -3099.977571 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.058 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.86296 -40.91325 -37.75632 -36.63827 -33.46030 -32.69972 -30.77654 -28.88193 -26.13498 -25.30618 -24.20785 -23.11151 -20.31205 -18.33685 -17.36986 -17.26982 -16.17595 -16.06162 -15.20133 -14.70032 -14.51228 -14.29328 -13.88157 -13.60830 -13.23315 -12.47589 -11.73858 -11.61930 -11.45441 -11.41894 -11.30694 -11.18066 -10.98693 -10.77175 -10.33933 -10.18362 -10.12768 -9.35383 -9.06595 -8.84372 -8.47786 -7.79258 -6.11682 -4.19450 0.75644 1.08163 1.56065 3.24356 3.31646 3.34341 3.57489 3.74683 4.07018 4.28705 4.43432 4.81068 4.97516 5.20370 5.27624 5.75354 5.89588 6.12946 6.37747 6.58092 6.77633 6.93127 7.04586 7.15258 7.40438 7.62031 7.81844 7.99238 8.14657 8.29397 8.83407 9.45688 10.94479 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.007240 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.459623 B = 3866.582566 C = 4850.803691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.217 3.783 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.457 5.457 13 C 0.027 3.973 14 C 0.367 3.633 15 N -0.501 5.501 16 C 0.374 3.626 17 Cl 0.023 6.977 18 N -0.522 5.522 19 C 0.147 3.853 20 C -0.039 4.039 21 F -0.116 7.116 22 H 0.093 0.907 23 H 0.022 0.978 24 H 0.036 0.964 25 H 0.263 0.737 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.885 -1.407 11.821 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.114 3.886 3 H 0.075 0.925 4 C -0.558 4.558 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.170 5.170 13 C -0.119 4.119 14 C 0.123 3.877 15 N -0.225 5.225 16 C 0.079 3.921 17 Cl 0.050 6.950 18 N -0.242 5.242 19 C -0.017 4.017 20 C -0.068 4.068 21 F -0.094 7.094 22 H 0.111 0.889 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.991 -0.447 11.429 11.480 hybrid contribution 0.188 -1.078 -0.840 1.379 sum -0.803 -1.525 10.589 10.729 Atomic orbital electron populations 1.22411 0.98662 0.98995 1.02532 1.19493 0.91502 0.94972 0.82674 0.92455 1.21055 1.32054 1.13120 0.89598 0.91753 1.24887 0.94904 0.94984 0.98987 1.69907 1.36045 1.22452 1.23749 0.86470 0.79243 0.79282 0.82276 1.20638 1.21119 1.19785 1.59254 1.51651 1.04334 1.01793 1.22556 0.98420 0.86424 1.04474 1.20691 0.86308 0.89679 0.91001 1.68378 1.13483 1.09115 1.31476 1.22899 0.93357 0.90750 0.85111 1.98423 1.70361 1.28480 1.97698 1.67889 1.16224 1.14714 1.25413 1.22988 0.91622 0.88547 0.98532 1.18951 1.03999 0.88801 0.95070 1.91466 1.76038 1.45629 1.96312 0.88877 0.95859 0.94561 0.92694 0.94046 0.88243 0.91354 0.80053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.22 37.15 0.31 -3.69 15 2 C 0.22 5.35 1.97 -68.87 -0.14 5.22 15 3 H 0.06 1.60 7.77 -51.93 -0.40 1.20 15 4 C -0.52 -13.64 7.88 -34.44 -0.27 -13.91 15 5 H 0.06 1.66 6.77 -52.49 -0.36 1.30 15 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.88 -24.52 11.32 55.43 0.63 -23.89 15 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 15 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 11 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 12 N -0.46 -9.70 4.75 -174.51 -0.83 -10.53 15 13 C 0.03 0.49 8.47 60.06 0.51 1.00 15 14 C 0.37 7.13 6.02 -154.63 -0.93 6.20 15 15 N -0.50 -10.03 6.63 -10.81 -0.07 -10.10 15 16 C 0.37 6.57 8.18 -91.99 -0.75 5.82 15 17 Cl 0.02 0.35 29.27 -51.86 -1.52 -1.17 15 18 N -0.52 -8.22 10.40 -11.68 -0.12 -8.34 15 19 C 0.15 2.01 11.28 -17.22 -0.19 1.81 15 20 C -0.04 -0.63 7.05 -38.99 -0.27 -0.91 15 21 F -0.12 -1.76 14.96 2.25 0.03 -1.73 15 22 H 0.09 2.47 6.07 -51.93 -0.32 2.15 15 23 H 0.02 0.52 6.47 -51.93 -0.34 0.19 15 24 H 0.04 0.82 5.66 -51.93 -0.29 0.53 15 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 26 H 0.04 0.74 6.51 -51.93 -0.34 0.41 15 27 H 0.10 1.87 6.41 -51.93 -0.33 1.54 15 28 H 0.07 1.09 5.83 -51.93 -0.30 0.78 15 29 H 0.18 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 260.42 15.07 3.92 3.92 Total: -1.00 -27.93 260.42 -7.05 -34.98 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -2.23 Total: -1.91 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.84 Total: 3.19 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.39 Total: -52.87 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.03 Total: -1.73 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.52 Total: -1.17 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.93 -7.05 -34.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085785888.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.900 kcal (2) G-P(sol) polarization free energy of solvation -27.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds