Wall clock time and date at job start Mon Mar 30 2020 07:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47134 * 2 1 4 4 C 1.50704 * 109.47429 * 239.99833 * 2 1 3 5 5 H 1.07996 * 120.00224 * 240.00383 * 4 2 1 6 6 C 1.37877 * 119.99576 * 59.99546 * 4 2 1 7 7 N 1.31516 * 120.00122 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00060 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47490 * 90.00043 * 8 6 4 10 10 H 1.48497 * 109.47354 * 210.00388 * 8 6 4 11 11 H 1.48502 * 109.46892 * 330.00348 * 8 6 4 12 12 N 1.46902 * 109.47316 * 120.00148 * 2 1 3 13 13 C 1.46894 * 111.00075 * 58.95498 * 12 2 1 14 14 C 1.38678 * 110.99796 * 294.99873 * 12 2 1 15 15 N 1.32929 * 120.53333 * 0.02562 * 14 12 2 16 16 C 1.31902 * 120.69870 * 179.97438 * 15 14 12 17 17 Cl 1.73602 * 119.07771 * 180.28770 * 16 15 14 18 18 N 1.31874 * 121.84309 * 0.02562 * 16 15 14 19 19 C 1.32579 * 121.01137 * 0.02562 * 18 16 15 20 20 C 1.38267 * 119.18516 * 359.97438 * 19 18 16 21 21 F 1.35101 * 120.83554 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47337 * 60.00316 * 1 2 3 23 23 H 1.09000 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47191 * 299.99660 * 1 2 3 25 25 H 0.97007 * 120.00025 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46872 * 296.04033 * 13 12 2 27 27 H 1.08997 * 109.47356 * 56.04515 * 13 12 2 28 28 H 1.09006 * 109.47315 * 176.05255 * 13 12 2 29 29 H 1.07992 * 120.40356 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 7 2.0196 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2459 14 6 1.6695 -0.0018 2.3498 15 7 0.9787 1.1313 2.2733 16 6 0.6435 1.7907 3.3654 17 17 -0.2654 3.2623 3.2170 18 7 0.9751 1.3606 4.5672 19 6 1.6646 0.2394 4.7252 20 6 2.0381 -0.4855 3.6086 21 9 2.7417 -1.6324 3.7310 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7093 1.1617 -3.4844 26 1 0.4420 -2.0731 1.3348 27 1 1.8167 -2.5950 0.3318 28 1 1.9617 -2.5869 2.1059 29 1 1.9306 -0.1039 5.7140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085785888.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:39 Heat of formation + Delta-G solvation = 8.007319 kcal Electronic energy + Delta-G solvation = -17548.456266 eV Core-core repulsion = 14447.745320 eV Total energy + Delta-G solvation = -3100.710946 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.10375 -42.28921 -39.31723 -37.92893 -35.20772 -34.26057 -32.27583 -30.60473 -27.64588 -27.28464 -25.57236 -24.58565 -22.05714 -19.72782 -18.78372 -18.57498 -18.08267 -17.37897 -16.87635 -16.37286 -15.86205 -15.60759 -15.38117 -15.21318 -14.70753 -14.16411 -13.47611 -13.17493 -13.04877 -12.85977 -12.77738 -12.66808 -12.57698 -12.52560 -12.12515 -12.01929 -11.86967 -11.09250 -10.60105 -10.53815 -10.27417 -9.33641 -8.14183 -6.28765 -0.55867 -0.21689 0.26966 1.43401 1.44721 1.54844 2.22081 2.33559 2.47870 2.79315 3.07766 3.15663 3.52259 3.61522 4.02562 4.37657 4.45647 4.63912 4.91935 4.94888 5.01061 5.10847 5.31042 5.48229 5.60998 5.71911 5.91158 6.17873 6.38032 6.65054 6.83355 7.40281 8.91675 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.007240 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.459623 B = 3866.582566 C = 4850.803691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.230 3.770 3 H 0.015 0.985 4 C -0.532 4.532 5 H 0.066 0.934 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.267 1.267 12 N -0.473 5.473 13 C 0.031 3.969 14 C 0.340 3.660 15 N -0.536 5.536 16 C 0.363 3.637 17 Cl 0.033 6.967 18 N -0.515 5.515 19 C 0.171 3.829 20 C -0.032 4.032 21 F -0.108 7.108 22 H 0.063 0.937 23 H 0.027 0.973 24 H 0.043 0.957 25 H 0.263 0.737 26 H 0.039 0.961 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 -2.543 13.468 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.124 3.876 3 H 0.033 0.967 4 C -0.570 4.570 5 H 0.084 0.916 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.192 1.192 12 N -0.187 5.187 13 C -0.114 4.114 14 C 0.098 3.902 15 N -0.260 5.260 16 C 0.069 3.931 17 Cl 0.060 6.940 18 N -0.235 5.235 19 C 0.007 3.993 20 C -0.060 4.060 21 F -0.086 7.086 22 H 0.082 0.918 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.507 -1.590 13.101 13.207 hybrid contribution 0.032 -0.682 -1.197 1.378 sum -0.475 -2.272 11.904 12.128 Atomic orbital electron populations 1.22184 0.98487 0.98818 1.01381 1.19043 0.91417 0.92972 0.84125 0.96742 1.21360 1.31914 1.13160 0.90545 0.91594 1.25692 0.95063 0.95621 1.01904 1.70051 1.37158 1.23821 1.24266 0.85463 0.78909 0.78160 0.78533 1.19831 1.21201 1.19181 1.59211 1.52886 1.05211 1.01373 1.22578 0.98442 0.85268 1.05133 1.20804 0.87685 0.90004 0.91664 1.68213 1.14765 1.09841 1.33160 1.23087 0.93613 0.91200 0.85213 1.98421 1.70025 1.27781 1.97733 1.68052 1.16059 1.15286 1.24109 1.23835 0.88921 0.86684 0.99836 1.18927 1.03738 0.89123 0.94257 1.91487 1.75799 1.45197 1.96163 0.91833 0.95356 0.93814 0.92786 0.94221 0.89206 0.88719 0.74687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.34 8.22 71.98 0.59 -6.75 15 2 C 0.23 11.62 1.97 44.17 0.09 11.71 15 3 H 0.01 0.86 7.77 -2.39 -0.02 0.84 15 4 C -0.53 -28.33 7.88 25.60 0.20 -28.13 15 5 H 0.07 3.41 6.77 -2.91 -0.02 3.39 15 6 C 0.02 0.92 5.30 84.65 0.45 1.37 15 7 N -0.91 -52.08 11.32 21.45 0.24 -51.84 15 8 Si 0.96 42.50 29.54 68.60 2.03 44.53 15 9 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 10 H -0.29 -12.56 7.11 99.48 0.71 -11.86 15 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 12 N -0.47 -20.09 4.75 -706.01 -3.35 -23.44 15 13 C 0.03 1.10 8.47 127.69 1.08 2.18 15 14 C 0.34 12.99 6.02 133.18 0.80 13.80 15 15 N -0.54 -21.43 6.63 -188.11 -1.25 -22.68 15 16 C 0.36 12.39 8.18 180.83 1.48 13.87 15 17 Cl 0.03 0.99 29.27 -2.72 -0.08 0.91 15 18 N -0.52 -14.80 10.40 -190.86 -1.98 -16.78 15 19 C 0.17 4.01 11.28 84.59 0.95 4.96 15 20 C -0.03 -0.95 7.05 22.65 0.16 -0.79 15 21 F -0.11 -2.93 14.96 44.97 0.67 -2.25 15 22 H 0.06 3.49 6.07 -2.39 -0.01 3.47 15 23 H 0.03 1.30 6.47 -2.39 -0.02 1.28 15 24 H 0.04 2.04 5.66 -2.39 -0.01 2.02 15 25 H 0.26 14.26 8.31 -92.70 -0.77 13.49 15 26 H 0.04 1.40 6.51 -2.39 -0.02 1.38 15 27 H 0.09 3.34 6.41 -2.39 -0.02 3.33 15 28 H 0.09 2.82 5.83 -2.38 -0.01 2.81 15 29 H 0.24 2.90 8.06 -2.91 -0.02 2.87 15 Total: -1.00 -61.26 260.42 3.29 -57.97 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: 1.20 Total: 1.37 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.81 Total: 12.20 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -6.34 Total: -114.74 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.67 Total: -2.25 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 17 Polarization: 0.99 SS G_CDS: -0.08 Total: 0.91 kcal Total: -61.26 3.29 -57.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085785888.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.978 kcal (2) G-P(sol) polarization free energy of solvation -61.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds