Wall clock time and date at job start Mon Mar 30 2020 07:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86810 * 119.99730 * 2 1 4 4 H 1.48496 * 109.46657 * 269.99963 * 3 2 1 5 5 H 1.48494 * 109.47074 * 29.99770 * 3 2 1 6 6 H 1.48496 * 109.46950 * 150.00005 * 3 2 1 7 7 C 1.37870 * 120.00510 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99963 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00349 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.47001 * 299.99474 * 9 7 2 11 11 N 1.46899 * 109.47234 * 60.00010 * 9 7 2 12 12 C 1.50706 * 109.47269 * 180.02562 * 9 7 2 13 13 C 1.33611 * 125.12113 * 99.71901 * 12 9 7 14 14 C 1.37970 * 115.06170 * 179.83380 * 13 12 9 15 15 C 1.34792 * 114.70494 * 0.45447 * 14 13 12 16 16 C 1.47828 * 125.27081 * 179.72249 * 15 14 13 17 17 C 1.39576 * 120.14385 * 359.74462 * 16 15 14 18 18 C 1.37954 * 119.85237 * 179.67692 * 17 16 15 19 19 C 1.38363 * 120.14515 * 0.61777 * 18 17 16 20 20 C 1.38351 * 120.28873 * 359.67953 * 19 18 17 21 21 C 1.37962 * 120.15138 * 359.97438 * 20 19 18 22 22 S 1.75861 * 125.11412 * 280.02411 * 12 9 7 23 23 H 0.96998 * 119.99830 * 0.02562 * 1 2 3 24 24 H 1.00895 * 111.00638 * 59.99951 * 11 9 7 25 25 H 1.00899 * 110.99857 * 183.95967 * 11 9 7 26 26 H 1.07997 * 122.46761 * 359.97438 * 13 12 9 27 27 H 1.08002 * 122.64758 * 180.21649 * 14 13 12 28 28 H 1.08003 * 120.06959 * 359.97351 * 17 16 15 29 29 H 1.08007 * 119.92902 * 180.33751 * 18 17 16 30 30 H 1.08002 * 119.85494 * 179.69449 * 19 18 17 31 31 H 1.08000 * 119.92751 * 180.02562 * 20 19 18 32 32 H 1.07992 * 120.07905 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8753 -0.6795 -0.8895 11 7 4.0008 -0.5022 1.2001 12 6 4.0140 -2.6147 -0.0013 13 6 4.4446 -3.2767 -1.0791 14 6 4.8625 -4.5701 -0.8422 15 6 4.7618 -4.9685 0.4415 16 6 5.1364 -6.3040 0.9527 17 6 5.6358 -7.2733 0.0814 18 6 5.9897 -8.5155 0.5661 19 6 5.8387 -8.8056 1.9105 20 6 5.3385 -7.8514 2.7784 21 6 4.9873 -6.6029 2.3080 22 16 4.1146 -3.6535 1.4141 23 1 -0.4850 0.8400 -0.0004 24 1 3.6770 -0.9602 2.0388 25 1 5.0073 -0.4320 1.1920 26 1 4.4663 -2.8314 -2.0627 27 1 5.2369 -5.2139 -1.6244 28 1 5.7493 -7.0497 -0.9691 29 1 6.3814 -9.2646 -0.1061 30 1 6.1127 -9.7813 2.2840 31 1 5.2234 -8.0840 3.8268 32 1 4.5974 -5.8588 2.9865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095666818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:13 Heat of formation + Delta-G solvation = 59.003152 kcal Electronic energy + Delta-G solvation = -15848.487400 eV Core-core repulsion = 13286.341074 eV Total energy + Delta-G solvation = -2562.146326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21993 -37.42161 -34.83495 -32.07665 -31.48409 -31.00132 -27.93810 -26.08648 -24.12228 -22.68258 -21.71273 -20.90628 -18.60489 -17.21449 -16.83094 -16.16609 -15.27553 -14.89515 -14.54925 -14.50330 -14.04982 -13.50516 -13.32285 -13.11475 -12.65021 -12.32508 -12.17558 -12.02580 -11.57845 -11.26344 -11.04583 -10.81678 -10.43790 -10.35075 -9.99830 -9.45575 -9.15871 -9.01743 -8.59840 -8.03185 -7.54794 -7.33642 -6.05528 -4.17258 0.74272 1.34990 1.94192 2.04752 2.50277 3.22705 3.47645 3.58276 3.88305 3.89742 4.65573 4.74396 4.85761 4.89636 5.06352 5.23799 5.38251 5.44322 5.58624 5.79750 5.82392 5.86703 5.99443 6.05246 6.36590 6.41621 6.44465 6.56628 6.72262 6.83344 6.93924 7.00117 7.46919 8.03611 8.23202 8.58918 8.93682 9.56865 11.03828 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.045541 B = 0.004686 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.688605 B = 5973.281174 C = 6092.784241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.088 3.912 3 Si 0.865 3.135 4 H -0.296 1.296 5 H -0.302 1.302 6 H -0.192 1.192 7 C -0.524 4.524 8 H 0.071 0.929 9 C 0.245 3.755 10 H 0.058 0.942 11 N -0.833 5.833 12 C -0.129 4.129 13 C -0.173 4.173 14 C -0.104 4.104 15 C -0.191 4.191 16 C 0.008 3.992 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.120 4.120 22 S 0.114 5.886 23 H 0.264 0.736 24 H 0.330 0.670 25 H 0.311 0.689 26 H 0.137 0.863 27 H 0.131 0.869 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.242 -13.457 2.756 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.117 4.117 3 Si 0.692 3.308 4 H -0.223 1.223 5 H -0.229 1.229 6 H -0.114 1.114 7 C -0.562 4.562 8 H 0.090 0.910 9 C 0.134 3.866 10 H 0.076 0.924 11 N -0.362 5.362 12 C -0.250 4.250 13 C -0.202 4.202 14 C -0.136 4.136 15 C -0.308 4.308 16 C 0.006 3.994 17 C -0.133 4.133 18 C -0.133 4.133 19 C -0.150 4.150 20 C -0.131 4.131 21 C -0.139 4.139 22 S 0.380 5.620 23 H 0.074 0.926 24 H 0.143 0.857 25 H 0.122 0.878 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.308 -12.492 4.050 17.998 hybrid contribution 0.831 -0.325 -1.483 1.730 sum 13.138 -12.817 2.567 18.533 Atomic orbital electron populations 1.69949 1.06946 1.27490 1.48785 1.24963 0.94531 1.00028 0.92197 0.87210 0.84632 0.81025 0.77929 1.22308 1.22942 1.11378 1.20704 0.86779 0.94786 1.53959 0.91042 1.18324 0.96491 0.80927 0.90893 0.92448 1.60062 1.13032 1.57575 1.05493 1.26468 1.00472 1.03137 0.94901 1.19932 1.05829 0.94568 0.99840 1.20226 1.01705 0.96373 0.95264 1.22805 1.12561 0.97776 0.97619 1.18132 0.97348 0.90758 0.93119 1.21179 0.99614 0.93009 0.99521 1.21040 1.00074 0.96530 0.95666 1.21150 1.00828 0.99342 0.93729 1.21029 0.99003 0.93290 0.99738 1.21250 1.00796 0.97287 0.94570 1.83911 1.62224 1.03750 1.12105 0.92628 0.85666 0.87753 0.84532 0.85098 0.85823 0.86002 0.86228 0.85955 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.09 2.50 5.47 -17.82 -0.10 2.41 16 3 Si 0.87 21.19 26.94 -169.99 -4.58 16.61 16 4 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.19 -4.32 5.17 56.52 0.29 -4.03 16 7 C -0.52 -14.41 9.29 -34.45 -0.32 -14.73 16 8 H 0.07 2.19 7.98 -52.48 -0.42 1.77 16 9 C 0.25 5.49 2.54 -70.02 -0.18 5.31 16 10 H 0.06 1.30 7.55 -51.93 -0.39 0.91 16 11 N -0.83 -16.84 5.76 -6.65 -0.04 -16.88 16 12 C -0.13 -2.58 5.38 -35.93 -0.19 -2.77 16 13 C -0.17 -3.15 10.02 -41.30 -0.41 -3.56 16 14 C -0.10 -1.68 9.65 -40.90 -0.39 -2.08 16 15 C -0.19 -3.14 6.37 -36.88 -0.24 -3.38 16 16 C 0.01 0.12 5.87 -104.98 -0.62 -0.50 16 17 C -0.11 -1.41 9.54 -39.19 -0.37 -1.79 16 18 C -0.11 -1.22 10.03 -39.64 -0.40 -1.61 16 19 C -0.13 -1.35 10.04 -39.49 -0.40 -1.75 16 20 C -0.11 -1.25 10.03 -39.64 -0.40 -1.65 16 21 C -0.12 -1.61 9.60 -39.18 -0.38 -1.99 16 22 S 0.11 2.00 21.45 -107.50 -2.31 -0.30 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.33 6.57 8.32 -39.29 -0.33 6.24 16 25 H 0.31 5.41 9.06 -39.29 -0.36 5.06 16 26 H 0.14 2.31 8.06 -52.49 -0.42 1.89 16 27 H 0.13 1.75 6.89 -52.49 -0.36 1.38 16 28 H 0.12 1.36 6.76 -52.48 -0.35 1.00 16 29 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.59 7.28 -52.49 -0.38 1.21 16 LS Contribution 285.72 15.07 4.31 4.31 Total: -1.00 -30.99 285.72 -9.76 -40.75 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -3.53 Total: 10.25 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -4.39 Total: -28.08 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.74 Total: -43.53 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.58 Total: 16.61 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.31 Total: -0.30 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.99 -9.76 -40.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095666818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.752 kcal (2) G-P(sol) polarization free energy of solvation -30.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds