Wall clock time and date at job start Mon Mar 30 2020 07:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86810 * 119.99730 * 2 1 4 4 H 1.48496 * 109.46657 * 269.99963 * 3 2 1 5 5 H 1.48494 * 109.47074 * 29.99770 * 3 2 1 6 6 H 1.48496 * 109.46950 * 150.00005 * 3 2 1 7 7 C 1.37870 * 120.00510 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99963 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00349 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.47001 * 299.99474 * 9 7 2 11 11 N 1.46899 * 109.47234 * 60.00010 * 9 7 2 12 12 C 1.50706 * 109.47269 * 180.02562 * 9 7 2 13 13 C 1.33611 * 125.12113 * 99.71901 * 12 9 7 14 14 C 1.37970 * 115.06170 * 179.83380 * 13 12 9 15 15 C 1.34792 * 114.70494 * 0.45447 * 14 13 12 16 16 C 1.47828 * 125.27081 * 179.72249 * 15 14 13 17 17 C 1.39576 * 120.14385 * 359.74462 * 16 15 14 18 18 C 1.37954 * 119.85237 * 179.67692 * 17 16 15 19 19 C 1.38363 * 120.14515 * 0.61777 * 18 17 16 20 20 C 1.38351 * 120.28873 * 359.67953 * 19 18 17 21 21 C 1.37962 * 120.15138 * 359.97438 * 20 19 18 22 22 S 1.75861 * 125.11412 * 280.02411 * 12 9 7 23 23 H 0.96998 * 119.99830 * 0.02562 * 1 2 3 24 24 H 1.00895 * 111.00638 * 59.99951 * 11 9 7 25 25 H 1.00899 * 110.99857 * 183.95967 * 11 9 7 26 26 H 1.07997 * 122.46761 * 359.97438 * 13 12 9 27 27 H 1.08002 * 122.64758 * 180.21649 * 14 13 12 28 28 H 1.08003 * 120.06959 * 359.97351 * 17 16 15 29 29 H 1.08007 * 119.92902 * 180.33751 * 18 17 16 30 30 H 1.08002 * 119.85494 * 179.69449 * 19 18 17 31 31 H 1.08000 * 119.92751 * 180.02562 * 20 19 18 32 32 H 1.07992 * 120.07905 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8753 -0.6795 -0.8895 11 7 4.0008 -0.5022 1.2001 12 6 4.0140 -2.6147 -0.0013 13 6 4.4446 -3.2767 -1.0791 14 6 4.8625 -4.5701 -0.8422 15 6 4.7618 -4.9685 0.4415 16 6 5.1364 -6.3040 0.9527 17 6 5.6358 -7.2733 0.0814 18 6 5.9897 -8.5155 0.5661 19 6 5.8387 -8.8056 1.9105 20 6 5.3385 -7.8514 2.7784 21 6 4.9873 -6.6029 2.3080 22 16 4.1146 -3.6535 1.4141 23 1 -0.4850 0.8400 -0.0004 24 1 3.6770 -0.9602 2.0388 25 1 5.0073 -0.4320 1.1920 26 1 4.4663 -2.8314 -2.0627 27 1 5.2369 -5.2139 -1.6244 28 1 5.7493 -7.0497 -0.9691 29 1 6.3814 -9.2646 -0.1061 30 1 6.1127 -9.7813 2.2840 31 1 5.2234 -8.0840 3.8268 32 1 4.5974 -5.8588 2.9865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095666818.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:12 Heat of formation + Delta-G solvation = 39.963946 kcal Electronic energy + Delta-G solvation = -15849.313002 eV Core-core repulsion = 13286.341074 eV Total energy + Delta-G solvation = -2562.971928 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18646 -38.77802 -36.48853 -34.00672 -32.75147 -31.88510 -29.34616 -27.89951 -25.48560 -23.70164 -22.78664 -22.55234 -19.89216 -18.89251 -18.38639 -17.31339 -16.62468 -16.49922 -15.86426 -15.72451 -15.53594 -14.72236 -14.46560 -14.38369 -14.28126 -13.77605 -13.62521 -13.39415 -12.95995 -12.70368 -12.34334 -12.29402 -12.05699 -11.89305 -11.53362 -11.43673 -10.77108 -10.41808 -9.90080 -9.42097 -9.06700 -8.75291 -8.25774 -6.40873 -0.41215 0.46727 0.64865 0.82334 1.12846 1.51438 1.58462 1.91877 1.94573 2.59720 2.94957 3.12682 3.66452 3.97678 4.06334 4.12248 4.14898 4.27990 4.47465 4.52529 4.63968 4.73494 4.88936 4.97759 5.10890 5.21097 5.37864 5.47806 5.51520 5.57242 5.58240 5.69447 6.05674 6.08484 6.38983 6.70632 6.92264 7.37031 8.87385 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.045541 B = 0.004686 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.688605 B = 5973.281174 C = 6092.784241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.028 3.972 3 Si 0.931 3.069 4 H -0.297 1.297 5 H -0.314 1.314 6 H -0.156 1.156 7 C -0.520 4.520 8 H 0.023 0.977 9 C 0.255 3.745 10 H 0.058 0.942 11 N -0.833 5.833 12 C -0.176 4.176 13 C -0.164 4.164 14 C -0.119 4.119 15 C -0.173 4.173 16 C -0.028 4.028 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.136 4.136 22 S 0.105 5.895 23 H 0.264 0.736 24 H 0.332 0.668 25 H 0.334 0.666 26 H 0.145 0.855 27 H 0.162 0.838 28 H 0.136 0.864 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.100 -15.383 2.936 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.171 4.171 3 Si 0.755 3.245 4 H -0.225 1.225 5 H -0.242 1.242 6 H -0.077 1.077 7 C -0.559 4.559 8 H 0.041 0.959 9 C 0.143 3.857 10 H 0.076 0.924 11 N -0.363 5.363 12 C -0.295 4.295 13 C -0.193 4.193 14 C -0.150 4.150 15 C -0.291 4.291 16 C -0.030 4.030 17 C -0.137 4.137 18 C -0.133 4.133 19 C -0.141 4.141 20 C -0.136 4.136 21 C -0.155 4.155 22 S 0.372 5.628 23 H 0.072 0.928 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.163 0.837 27 H 0.180 0.820 28 H 0.154 0.846 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.194 -14.431 4.234 21.378 hybrid contribution -0.014 -0.048 -1.494 1.495 sum 15.180 -14.479 2.740 21.156 Atomic orbital electron populations 1.70101 1.08958 1.28244 1.51563 1.25913 0.95149 1.03965 0.92049 0.86274 0.84508 0.75824 0.77850 1.22501 1.24196 1.07668 1.20919 0.89859 0.92610 1.52474 0.95908 1.17901 0.93053 0.83124 0.91580 0.92413 1.59742 1.14728 1.57102 1.04735 1.26136 1.03981 1.02782 0.96647 1.20210 1.04179 0.95233 0.99695 1.20442 1.02429 0.96042 0.96060 1.23181 1.10365 0.98091 0.97418 1.18262 1.00103 0.90439 0.94162 1.21432 0.99017 0.93310 0.99943 1.21450 0.99082 0.96310 0.96479 1.21618 0.98668 1.00305 0.93481 1.21355 0.98437 0.92501 1.01285 1.21373 1.01468 0.98398 0.94266 1.83815 1.62708 1.04436 1.11885 0.92782 0.85429 0.85320 0.83693 0.82048 0.84600 0.82890 0.82952 0.83678 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 2 C 0.03 1.65 5.47 84.65 0.46 2.11 16 3 Si 0.93 44.35 26.94 68.60 1.85 46.20 16 4 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 5 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 6 H -0.16 -6.52 5.17 99.48 0.51 -6.00 16 7 C -0.52 -29.61 9.29 25.60 0.24 -29.37 16 8 H 0.02 1.47 7.98 -2.91 -0.02 1.45 16 9 C 0.26 11.45 2.54 43.42 0.11 11.56 16 10 H 0.06 2.58 7.55 -2.38 -0.02 2.56 16 11 N -0.83 -32.71 5.76 -174.95 -1.01 -33.72 16 12 C -0.18 -7.04 5.38 24.64 0.13 -6.91 16 13 C -0.16 -5.87 10.02 21.16 0.21 -5.66 16 14 C -0.12 -3.70 9.65 21.41 0.21 -3.50 16 15 C -0.17 -5.58 6.37 24.02 0.15 -5.42 16 16 C -0.03 -0.77 5.87 -20.09 -0.12 -0.88 16 17 C -0.12 -2.59 9.54 22.53 0.21 -2.38 16 18 C -0.12 -1.97 10.03 22.23 0.22 -1.75 16 19 C -0.12 -1.99 10.04 22.33 0.22 -1.77 16 20 C -0.12 -2.30 10.03 22.23 0.22 -2.07 16 21 C -0.14 -3.47 9.60 22.53 0.22 -3.26 16 22 S 0.10 3.74 21.45 -56.49 -1.21 2.53 16 23 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 24 H 0.33 13.06 8.32 -89.70 -0.75 12.32 16 25 H 0.33 10.91 9.06 -89.69 -0.81 10.09 16 26 H 0.15 4.80 8.06 -2.91 -0.02 4.77 16 27 H 0.16 3.91 6.89 -2.91 -0.02 3.89 16 28 H 0.14 2.56 6.76 -2.91 -0.02 2.54 16 29 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 30 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.11 2.97 7.28 -2.91 -0.02 2.95 16 Total: -1.00 -69.80 285.72 1.83 -67.97 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -0.60 Total: 26.63 kcal Atomic # 6 Polarization: -51.78 SS G_CDS: 2.50 Total: -49.28 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -0.71 Total: -94.05 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.85 Total: 46.20 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.21 Total: 2.53 kcal Total: -69.80 1.83 -67.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095666818.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.937 kcal (2) G-P(sol) polarization free energy of solvation -69.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds