Wall clock time and date at job start Mon Mar 30 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99865 * 2 1 4 4 H 1.48505 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46927 * 300.00024 * 3 2 1 6 6 H 1.48491 * 109.47272 * 60.00320 * 3 2 1 7 7 C 1.37877 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00606 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46893 * 59.99776 * 9 7 2 11 11 N 1.46898 * 109.47047 * 300.00201 * 9 7 2 12 12 C 1.50696 * 109.47580 * 179.97438 * 9 7 2 13 13 C 1.33614 * 125.12007 * 260.00077 * 12 9 7 14 14 C 1.37965 * 115.06306 * 179.74717 * 13 12 9 15 15 C 1.34796 * 114.70777 * 0.25078 * 14 13 12 16 16 C 1.47825 * 125.27347 * 180.02562 * 15 14 13 17 17 C 1.39571 * 120.14052 * 359.72462 * 16 15 14 18 18 C 1.37970 * 119.85037 * 179.74215 * 17 16 15 19 19 C 1.38359 * 120.14189 * 0.55638 * 18 17 16 20 20 C 1.38362 * 120.29324 * 359.69430 * 19 18 17 21 21 C 1.37960 * 120.14073 * 0.02562 * 20 19 18 22 22 S 1.75863 * 125.12012 * 80.13426 * 12 9 7 23 23 H 0.96992 * 120.00377 * 359.97438 * 1 2 3 24 24 H 1.00902 * 111.00213 * 176.04260 * 11 9 7 25 25 H 1.00895 * 110.99640 * 299.99783 * 11 9 7 26 26 H 1.08002 * 122.47140 * 0.02562 * 13 12 9 27 27 H 1.08004 * 122.64706 * 180.22773 * 14 13 12 28 28 H 1.08002 * 120.07600 * 0.02664 * 17 16 15 29 29 H 1.07994 * 119.92866 * 180.27254 * 18 17 16 30 30 H 1.07999 * 119.85487 * 179.72138 * 19 18 17 31 31 H 1.07995 * 119.92322 * 180.02562 * 20 19 18 32 32 H 1.08005 * 120.06510 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4070 -2.5773 1.1992 12 6 2.2303 -3.6446 -0.0018 13 6 2.5847 -4.3517 -1.0787 14 6 3.5036 -5.3537 -0.8435 15 6 3.8976 -5.4668 0.4406 16 6 4.8700 -6.4562 0.9511 17 6 5.4561 -7.3764 0.0807 18 6 6.3669 -8.2938 0.5627 19 6 6.6910 -8.3103 1.9077 20 6 6.1096 -7.4042 2.7768 21 6 5.2017 -6.4780 2.3066 22 16 3.0762 -4.2541 1.4145 23 1 -0.4850 0.8399 0.0004 24 1 -0.1570 -3.4140 1.1907 25 1 0.9653 -2.5261 2.0380 26 1 2.1850 -4.1508 -2.0617 27 1 3.8774 -5.9969 -1.6265 28 1 5.2007 -7.3674 -0.9687 29 1 6.8245 -9.0036 -0.1105 30 1 7.4012 -9.0334 2.2807 31 1 6.3672 -7.4221 3.8254 32 1 4.7490 -5.7709 2.9860 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095683578.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:16 Heat of formation + Delta-G solvation = 52.422786 kcal Electronic energy + Delta-G solvation = -15807.590715 eV Core-core repulsion = 13245.159043 eV Total energy + Delta-G solvation = -2562.431672 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.17911 -37.28613 -34.56960 -32.01581 -31.15998 -30.96275 -27.74021 -25.84412 -24.05168 -22.65646 -21.65713 -21.04688 -18.47860 -17.13518 -16.55761 -16.03844 -15.19433 -14.80891 -14.45504 -14.33363 -14.09315 -13.44975 -13.29115 -12.90428 -12.59066 -12.23188 -11.99245 -11.83831 -11.45906 -11.15666 -10.99344 -10.81467 -10.72332 -10.18410 -9.97556 -9.51504 -9.03589 -8.98905 -8.49600 -7.96808 -7.50254 -7.21535 -5.94824 -4.10648 0.80350 1.37779 2.02648 2.13140 2.60787 3.29702 3.30637 3.38703 3.43589 3.93583 4.44224 4.79311 4.88860 4.92334 5.09594 5.30197 5.41626 5.48101 5.69417 5.87454 5.91607 6.05357 6.14701 6.20873 6.43189 6.45890 6.49483 6.69156 6.87840 6.98329 7.02091 7.31928 7.84000 8.05037 8.49924 8.87413 9.03782 9.58473 11.09306 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.036582 B = 0.004676 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.218341 B = 5986.891245 C = 6100.122960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.085 3.915 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.279 3.721 10 H 0.060 0.940 11 N -0.807 5.807 12 C -0.128 4.128 13 C -0.181 4.181 14 C -0.101 4.101 15 C -0.197 4.197 16 C 0.011 3.989 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.122 4.122 22 S 0.103 5.897 23 H 0.257 0.743 24 H 0.301 0.699 25 H 0.318 0.682 26 H 0.136 0.864 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.432 -14.522 2.333 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.122 4.122 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.075 0.925 9 C 0.167 3.833 10 H 0.078 0.922 11 N -0.333 5.333 12 C -0.249 4.249 13 C -0.210 4.210 14 C -0.133 4.133 15 C -0.314 4.314 16 C 0.009 3.991 17 C -0.135 4.135 18 C -0.133 4.133 19 C -0.152 4.152 20 C -0.131 4.131 21 C -0.140 4.140 22 S 0.369 5.631 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.130 0.870 26 H 0.154 0.846 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.879 -13.294 3.605 16.388 hybrid contribution 1.066 -0.300 -1.368 1.760 sum 9.945 -13.594 2.237 16.991 Atomic orbital electron populations 1.70104 1.05695 1.25857 1.46313 1.24936 0.94684 0.98636 0.93976 0.86641 0.80305 0.84017 0.77614 1.19780 1.20964 1.20910 1.20859 0.92380 0.89075 1.54877 0.92546 1.18000 0.86455 0.87333 0.91534 0.92235 1.59162 1.27917 1.42204 1.04023 1.27137 1.02004 1.01407 0.94315 1.19943 1.02529 0.98459 1.00024 1.20242 0.98463 0.99373 0.95212 1.22770 1.06981 1.04040 0.97569 1.18138 0.94326 0.93524 0.93090 1.21180 0.97377 0.95364 0.99561 1.21034 0.97879 0.98721 0.95659 1.21137 1.00797 0.99580 0.93709 1.21025 0.96893 0.95450 0.99689 1.21248 0.98743 0.99449 0.94587 1.83899 1.39390 1.27217 1.12608 0.93318 0.88793 0.86980 0.84627 0.85271 0.85859 0.86053 0.86283 0.86009 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.16 12.77 55.43 0.71 -23.45 16 2 C 0.09 2.34 5.39 -17.82 -0.10 2.24 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.53 -14.43 8.71 -34.44 -0.30 -14.73 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.28 6.78 3.05 -70.02 -0.21 6.56 16 10 H 0.06 1.58 8.12 -51.92 -0.42 1.15 16 11 N -0.81 -18.70 8.46 -6.65 -0.06 -18.76 16 12 C -0.13 -2.68 5.38 -35.93 -0.19 -2.87 16 13 C -0.18 -3.45 10.02 -41.30 -0.41 -3.86 16 14 C -0.10 -1.70 9.65 -40.90 -0.39 -2.09 16 15 C -0.20 -3.35 6.37 -36.88 -0.24 -3.58 16 16 C 0.01 0.16 5.87 -104.98 -0.62 -0.45 16 17 C -0.11 -1.47 9.54 -39.18 -0.37 -1.85 16 18 C -0.11 -1.25 10.03 -39.64 -0.40 -1.64 16 19 C -0.13 -1.40 10.04 -39.49 -0.40 -1.80 16 20 C -0.11 -1.28 10.03 -39.64 -0.40 -1.68 16 21 C -0.12 -1.67 9.60 -39.19 -0.38 -2.04 16 22 S 0.10 1.88 21.45 -107.50 -2.31 -0.42 16 23 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.30 6.24 9.06 -39.29 -0.36 5.89 16 25 H 0.32 7.12 8.31 -39.29 -0.33 6.79 16 26 H 0.14 2.43 8.06 -52.49 -0.42 2.01 16 27 H 0.13 1.80 6.89 -52.48 -0.36 1.43 16 28 H 0.12 1.40 6.76 -52.49 -0.35 1.05 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.12 1.64 7.29 -52.48 -0.38 1.25 16 LS Contribution 291.94 15.07 4.40 4.40 Total: -1.00 -29.35 291.94 -10.12 -39.47 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -3.44 Total: 10.42 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -4.40 Total: -27.79 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.65 Total: -42.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.31 Total: -0.42 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.35 -10.12 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095683578.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.892 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds