Wall clock time and date at job start Mon Mar 30 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99865 * 2 1 4 4 H 1.48505 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46927 * 300.00024 * 3 2 1 6 6 H 1.48491 * 109.47272 * 60.00320 * 3 2 1 7 7 C 1.37877 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99642 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00606 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46893 * 59.99776 * 9 7 2 11 11 N 1.46898 * 109.47047 * 300.00201 * 9 7 2 12 12 C 1.50696 * 109.47580 * 179.97438 * 9 7 2 13 13 C 1.33614 * 125.12007 * 260.00077 * 12 9 7 14 14 C 1.37965 * 115.06306 * 179.74717 * 13 12 9 15 15 C 1.34796 * 114.70777 * 0.25078 * 14 13 12 16 16 C 1.47825 * 125.27347 * 180.02562 * 15 14 13 17 17 C 1.39571 * 120.14052 * 359.72462 * 16 15 14 18 18 C 1.37970 * 119.85037 * 179.74215 * 17 16 15 19 19 C 1.38359 * 120.14189 * 0.55638 * 18 17 16 20 20 C 1.38362 * 120.29324 * 359.69430 * 19 18 17 21 21 C 1.37960 * 120.14073 * 0.02562 * 20 19 18 22 22 S 1.75863 * 125.12012 * 80.13426 * 12 9 7 23 23 H 0.96992 * 120.00377 * 359.97438 * 1 2 3 24 24 H 1.00902 * 111.00213 * 176.04260 * 11 9 7 25 25 H 1.00895 * 110.99640 * 299.99783 * 11 9 7 26 26 H 1.08002 * 122.47140 * 0.02562 * 13 12 9 27 27 H 1.08004 * 122.64706 * 180.22773 * 14 13 12 28 28 H 1.08002 * 120.07600 * 0.02664 * 17 16 15 29 29 H 1.07994 * 119.92866 * 180.27254 * 18 17 16 30 30 H 1.07999 * 119.85487 * 179.72138 * 19 18 17 31 31 H 1.07995 * 119.92322 * 180.02562 * 20 19 18 32 32 H 1.08005 * 120.06510 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4070 -2.5773 1.1992 12 6 2.2303 -3.6446 -0.0018 13 6 2.5847 -4.3517 -1.0787 14 6 3.5036 -5.3537 -0.8435 15 6 3.8976 -5.4668 0.4406 16 6 4.8700 -6.4562 0.9511 17 6 5.4561 -7.3764 0.0807 18 6 6.3669 -8.2938 0.5627 19 6 6.6910 -8.3103 1.9077 20 6 6.1096 -7.4042 2.7768 21 6 5.2017 -6.4780 2.3066 22 16 3.0762 -4.2541 1.4145 23 1 -0.4850 0.8399 0.0004 24 1 -0.1570 -3.4140 1.1907 25 1 0.9653 -2.5261 2.0380 26 1 2.1850 -4.1508 -2.0617 27 1 3.8774 -5.9969 -1.6265 28 1 5.2007 -7.3674 -0.9687 29 1 6.8245 -9.0036 -0.1105 30 1 7.4012 -9.0334 2.2807 31 1 6.3672 -7.4221 3.8254 32 1 4.7490 -5.7709 2.9860 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095683578.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:15 Heat of formation + Delta-G solvation = 35.593529 kcal Electronic energy + Delta-G solvation = -15808.320486 eV Core-core repulsion = 13245.159043 eV Total energy + Delta-G solvation = -2563.161443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17213 -38.69965 -36.32890 -33.73690 -32.60201 -31.87423 -29.22606 -27.68962 -25.47219 -23.72750 -22.79229 -22.68774 -19.78634 -18.62199 -18.28565 -17.25934 -16.59712 -16.44673 -15.87916 -15.61689 -15.52303 -14.67508 -14.39480 -14.31614 -14.14121 -13.72492 -13.47420 -13.29543 -12.90510 -12.70721 -12.57984 -12.27729 -12.04473 -11.89564 -11.52873 -11.33650 -10.60465 -10.38589 -9.89182 -9.42423 -9.10909 -8.72909 -8.02760 -6.25483 -0.38505 0.47553 0.68806 0.83787 1.15986 1.40375 1.42768 1.53409 1.94184 2.44867 2.96014 3.20862 3.67993 3.99469 4.07722 4.22564 4.30437 4.33562 4.48714 4.55410 4.67929 4.75463 4.94988 5.11714 5.12638 5.28534 5.43491 5.56054 5.58650 5.59263 5.69956 5.72764 6.06018 6.06770 6.54938 6.97523 7.13513 7.46984 9.00304 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.036582 B = 0.004676 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.218341 B = 5986.891245 C = 6100.122960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.039 3.961 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.044 0.956 9 C 0.286 3.714 10 H 0.027 0.973 11 N -0.816 5.816 12 C -0.175 4.175 13 C -0.171 4.171 14 C -0.116 4.116 15 C -0.176 4.176 16 C -0.026 4.026 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.136 4.136 22 S 0.103 5.897 23 H 0.258 0.742 24 H 0.314 0.686 25 H 0.321 0.679 26 H 0.139 0.861 27 H 0.162 0.838 28 H 0.135 0.865 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.898 -16.548 2.621 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.166 4.166 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.584 4.584 8 H 0.062 0.938 9 C 0.174 3.826 10 H 0.044 0.956 11 N -0.343 5.343 12 C -0.295 4.295 13 C -0.201 4.201 14 C -0.147 4.147 15 C -0.293 4.293 16 C -0.028 4.028 17 C -0.138 4.138 18 C -0.133 4.133 19 C -0.141 4.141 20 C -0.135 4.135 21 C -0.155 4.155 22 S 0.370 5.630 23 H 0.067 0.933 24 H 0.125 0.875 25 H 0.133 0.867 26 H 0.156 0.844 27 H 0.179 0.821 28 H 0.153 0.847 29 H 0.171 0.829 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.345 -15.321 3.891 19.457 hybrid contribution 0.448 0.107 -1.405 1.478 sum 11.792 -15.213 2.486 19.408 Atomic orbital electron populations 1.70214 1.06956 1.26581 1.47508 1.25647 0.95458 1.01726 0.93738 0.85673 0.78932 0.80186 0.77747 1.19724 1.20336 1.20496 1.21103 0.91981 0.90809 1.54475 0.93766 1.17531 0.86632 0.87913 0.90509 0.95566 1.58994 1.28263 1.43194 1.03830 1.26597 1.04027 1.02443 0.96419 1.20170 1.02030 0.98221 0.99637 1.20416 0.98514 0.99623 0.96134 1.23162 1.05890 1.03025 0.97264 1.18250 0.95662 0.94675 0.94193 1.21429 0.97370 0.95034 0.99955 1.21445 0.96925 0.98411 0.96506 1.21615 1.00029 0.99039 0.93434 1.21355 0.96059 0.94827 1.01276 1.21368 0.99682 1.00269 0.94209 1.83746 1.39515 1.27880 1.11891 0.93318 0.87453 0.86657 0.84361 0.82104 0.84683 0.82904 0.82939 0.83646 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.35 12.77 21.45 0.27 -51.07 16 2 C 0.04 2.16 5.39 84.65 0.46 2.61 16 3 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.54 -30.43 8.71 25.60 0.22 -30.21 16 8 H 0.04 2.51 7.74 -2.91 -0.02 2.49 16 9 C 0.29 14.52 3.05 43.42 0.13 14.65 16 10 H 0.03 1.48 8.12 -2.38 -0.02 1.46 16 11 N -0.82 -39.21 8.46 -174.96 -1.48 -40.69 16 12 C -0.17 -7.54 5.38 24.64 0.13 -7.41 16 13 C -0.17 -6.60 10.02 21.16 0.21 -6.39 16 14 C -0.12 -3.80 9.65 21.41 0.21 -3.59 16 15 C -0.18 -5.86 6.37 24.02 0.15 -5.71 16 16 C -0.03 -0.73 5.87 -20.10 -0.12 -0.85 16 17 C -0.12 -2.67 9.54 22.53 0.21 -2.45 16 18 C -0.12 -2.00 10.03 22.23 0.22 -1.78 16 19 C -0.12 -2.02 10.04 22.33 0.22 -1.80 16 20 C -0.12 -2.31 10.03 22.23 0.22 -2.08 16 21 C -0.14 -3.53 9.60 22.52 0.22 -3.31 16 22 S 0.10 3.85 21.45 -56.49 -1.21 2.63 16 23 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 24 H 0.31 13.51 9.06 -89.69 -0.81 12.69 16 25 H 0.32 14.88 8.31 -89.70 -0.75 14.13 16 26 H 0.14 5.08 8.06 -2.91 -0.02 5.05 16 27 H 0.16 4.11 6.89 -2.91 -0.02 4.09 16 28 H 0.14 2.63 6.76 -2.91 -0.02 2.61 16 29 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 30 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.11 3.01 7.29 -2.91 -0.02 2.99 16 Total: -1.00 -64.34 291.94 1.70 -62.64 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.40 Total: 28.60 kcal Atomic # 6 Polarization: -50.81 SS G_CDS: 2.50 Total: -48.32 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -1.21 Total: -91.76 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.21 Total: 2.63 kcal Total: -64.34 1.70 -62.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095683578.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.230 kcal (2) G-P(sol) polarization free energy of solvation -64.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds