Wall clock time and date at job start Mon Mar 30 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33636 * 122.74982 * 2 1 4 4 S 1.76198 * 107.92520 * 179.97438 * 3 2 1 5 5 C 1.70976 * 90.28216 * 359.97438 * 4 3 2 6 6 S 1.76197 * 124.91633 * 179.97438 * 5 4 3 7 7 O 1.42092 * 102.99901 * 156.12362 * 6 5 4 8 8 C 1.81397 * 103.00335 * 269.98003 * 6 5 4 9 9 C 1.53000 * 109.47319 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47145 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.47338 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99682 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00320 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99850 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47170 * 60.00185 * 15 13 11 17 17 H 1.48499 * 109.46805 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46991 * 299.99286 * 15 13 11 19 19 N 1.29028 * 110.16507 * 359.73806 * 5 4 3 20 20 H 1.09002 * 109.47152 * 90.00090 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00190 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00171 * 1 2 3 23 23 H 1.08007 * 126.03537 * 359.97438 * 3 2 1 24 24 H 1.08998 * 109.47022 * 300.00047 * 8 6 5 25 25 H 1.08999 * 109.47440 * 59.99544 * 8 6 5 26 26 H 1.09005 * 109.46926 * 299.99502 * 9 8 6 27 27 H 1.08999 * 109.47397 * 59.99321 * 9 8 6 28 28 H 1.08998 * 109.47170 * 299.99833 * 10 9 8 29 29 H 1.09007 * 109.47487 * 59.99746 * 10 9 8 30 30 H 0.97000 * 119.99911 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 0.0018 6 16 4.6492 -2.3209 0.0023 7 8 3.8950 -3.3863 0.5634 8 6 4.9138 -2.6324 -1.7650 9 6 5.9014 -3.7883 -1.9369 10 6 6.1240 -4.0515 -3.4275 11 6 7.0972 -5.1895 -3.5969 12 1 7.5148 -5.6767 -2.7282 13 6 7.4536 -5.6095 -4.8609 14 7 6.9447 -5.0166 -5.9187 15 14 8.6595 -7.0207 -5.0707 16 1 8.1093 -8.2415 -4.4289 17 1 8.8756 -7.2761 -6.5175 18 1 9.9526 -6.6658 -4.4327 19 7 2.2199 -1.1083 0.0070 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.8391 2.1308 -0.0004 24 1 3.9650 -2.8929 -2.2340 25 1 5.3175 -1.7360 -2.2356 26 1 6.8503 -3.5281 -1.4679 27 1 5.4972 -4.6846 -1.4664 28 1 5.1749 -4.3117 -3.8962 29 1 6.5280 -3.1552 -3.8984 30 1 7.1951 -5.3124 -6.8079 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107976430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:15 Heat of formation + Delta-G solvation = -13.590262 kcal Electronic energy + Delta-G solvation = -14300.614291 eV Core-core repulsion = 11734.930935 eV Total energy + Delta-G solvation = -2565.683356 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.85513 -35.60646 -34.46113 -32.14502 -32.03309 -27.92268 -27.53959 -25.26449 -23.39915 -20.44411 -19.93963 -18.74725 -17.17003 -16.37163 -16.04835 -15.28245 -14.74823 -14.58008 -14.28706 -14.12882 -13.69497 -12.81470 -12.74889 -12.55437 -12.34216 -11.99739 -11.55045 -11.47167 -10.94011 -10.85002 -10.76875 -10.48408 -9.82934 -9.77661 -9.69716 -9.38056 -9.13867 -9.08968 -8.35693 -8.28989 -6.00539 -4.03582 0.25599 1.12206 1.47080 1.80561 2.42865 2.82972 3.34097 3.38323 3.41052 3.91125 4.40774 4.46036 4.84571 4.99271 5.35034 5.36892 5.40963 5.46476 5.55720 5.63919 5.99364 6.14498 6.46992 6.65755 7.00956 7.51521 7.64948 7.77351 7.98381 8.39386 9.03062 9.60661 11.10658 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.039887 B = 0.003941 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.806945 B = 7103.638730 C = 7194.426521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.049 3.951 3 C -0.249 4.249 4 S 0.190 5.810 5 C -0.308 4.308 6 S 1.354 4.646 7 O -0.820 6.820 8 C -0.438 4.438 9 C -0.094 4.094 10 C 0.028 3.972 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.404 5.404 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.179 0.821 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.015 0.985 29 H 0.020 0.980 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 16.255 12.914 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.389 4.389 4 S 0.443 5.557 5 C -0.674 4.674 6 S 1.546 4.454 7 O -0.815 6.815 8 C -0.578 4.578 9 C -0.133 4.133 10 C -0.011 4.011 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.201 1.201 19 N -0.119 5.119 20 H 0.095 0.905 21 H 0.093 0.907 22 H 0.095 0.905 23 H 0.196 0.804 24 H 0.108 0.892 25 H 0.133 0.867 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.623 15.845 13.565 21.365 hybrid contribution -2.283 -1.042 -1.452 2.900 sum -6.905 14.803 12.113 20.336 Atomic orbital electron populations 1.20367 0.87023 1.03360 1.03106 1.20763 0.98822 0.87008 1.02100 1.27102 0.96197 1.04017 1.11557 1.83529 1.06479 1.00546 1.65139 1.36764 1.04537 1.14312 1.11778 1.69842 1.00834 0.84922 0.89827 1.93141 1.68083 1.50574 1.69693 1.27792 1.06545 1.06974 1.16501 1.21353 0.95500 0.93700 1.02775 1.19084 0.96932 0.96882 0.88181 1.21230 1.25941 1.16907 0.92165 0.92522 1.25026 0.96469 0.96866 0.96048 1.69956 1.43993 1.41583 0.97972 0.86636 0.81577 0.82747 0.76932 1.20222 1.21306 1.20109 1.66519 1.04072 1.31130 1.10185 0.90526 0.90723 0.90473 0.80353 0.89213 0.86718 0.91880 0.92668 0.96618 0.96155 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.31 36.01 0.37 -0.40 16 2 C 0.05 0.63 6.74 -84.23 -0.57 0.06 16 3 C -0.25 -2.51 11.13 29.12 0.32 -2.18 16 4 S 0.19 1.85 23.20 -107.50 -2.49 -0.64 16 5 C -0.31 -4.32 7.06 51.58 0.36 -3.95 16 6 S 1.35 18.91 13.84 -107.50 -1.49 17.42 16 7 O -0.82 -16.63 17.78 -35.23 -0.63 -17.26 16 8 C -0.44 -7.24 5.88 37.16 0.22 -7.02 16 9 C -0.09 -1.89 5.16 -26.73 -0.14 -2.03 16 10 C 0.03 0.71 4.97 -27.89 -0.14 0.58 16 11 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 15 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 N -0.40 -6.61 10.42 -11.09 -0.12 -6.73 16 20 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.18 1.18 8.06 -52.48 -0.42 0.75 16 24 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 25 H 0.11 1.59 8.14 -51.92 -0.42 1.17 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 292.58 15.07 4.41 4.41 Total: -1.00 -37.74 292.58 -8.34 -46.08 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -3.77 Total: -5.10 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 0.02 Total: -28.55 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.62 Total: -33.01 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.63 Total: -17.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 20.77 SS G_CDS: -3.98 Total: 16.78 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -37.74 -8.34 -46.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107976430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.491 kcal (2) G-P(sol) polarization free energy of solvation -37.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds