Wall clock time and date at job start Mon Mar 30 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33636 * 122.74982 * 2 1 4 4 S 1.76198 * 107.92520 * 179.97438 * 3 2 1 5 5 C 1.70976 * 90.28216 * 359.97438 * 4 3 2 6 6 S 1.76197 * 124.91633 * 179.97438 * 5 4 3 7 7 O 1.42092 * 102.99901 * 156.12362 * 6 5 4 8 8 C 1.81397 * 103.00335 * 269.98003 * 6 5 4 9 9 C 1.53000 * 109.47319 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47145 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.47338 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99682 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00320 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99850 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47170 * 60.00185 * 15 13 11 17 17 H 1.48499 * 109.46805 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46991 * 299.99286 * 15 13 11 19 19 N 1.29028 * 110.16507 * 359.73806 * 5 4 3 20 20 H 1.09002 * 109.47152 * 90.00090 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00190 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00171 * 1 2 3 23 23 H 1.08007 * 126.03537 * 359.97438 * 3 2 1 24 24 H 1.08998 * 109.47022 * 300.00047 * 8 6 5 25 25 H 1.08999 * 109.47440 * 59.99544 * 8 6 5 26 26 H 1.09005 * 109.46926 * 299.99502 * 9 8 6 27 27 H 1.08999 * 109.47397 * 59.99321 * 9 8 6 28 28 H 1.08998 * 109.47170 * 299.99833 * 10 9 8 29 29 H 1.09007 * 109.47487 * 59.99746 * 10 9 8 30 30 H 0.97000 * 119.99911 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 0.0018 6 16 4.6492 -2.3209 0.0023 7 8 3.8950 -3.3863 0.5634 8 6 4.9138 -2.6324 -1.7650 9 6 5.9014 -3.7883 -1.9369 10 6 6.1240 -4.0515 -3.4275 11 6 7.0972 -5.1895 -3.5969 12 1 7.5148 -5.6767 -2.7282 13 6 7.4536 -5.6095 -4.8609 14 7 6.9447 -5.0166 -5.9187 15 14 8.6595 -7.0207 -5.0707 16 1 8.1093 -8.2415 -4.4289 17 1 8.8756 -7.2761 -6.5175 18 1 9.9526 -6.6658 -4.4327 19 7 2.2199 -1.1083 0.0070 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.8391 2.1308 -0.0004 24 1 3.9650 -2.8929 -2.2340 25 1 5.3175 -1.7360 -2.2356 26 1 6.8503 -3.5281 -1.4679 27 1 5.4972 -4.6846 -1.4664 28 1 5.1749 -4.3117 -3.8962 29 1 6.5280 -3.1552 -3.8984 30 1 7.1951 -5.3124 -6.8079 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107976430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:15 Heat of formation + Delta-G solvation = -41.890020 kcal Electronic energy + Delta-G solvation = -14301.841460 eV Core-core repulsion = 11734.930935 eV Total energy + Delta-G solvation = -2566.910525 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.79923 -37.02754 -36.33396 -34.04093 -33.01128 -29.45645 -28.69637 -26.33353 -25.28797 -22.18755 -20.89766 -19.73913 -18.59409 -18.12800 -17.20217 -16.55278 -16.38670 -16.19104 -15.50326 -15.23012 -14.65733 -14.36233 -14.00576 -13.83677 -13.55485 -13.47495 -13.15019 -12.68960 -12.64254 -12.53828 -12.35529 -12.09369 -11.62995 -11.41053 -11.22786 -10.62967 -10.56067 -10.55244 -10.01455 -9.56968 -8.19934 -6.31754 -0.69155 0.22146 0.57025 0.76401 1.37831 1.41284 1.44780 1.52455 1.76578 2.41943 2.73972 3.13225 3.53480 4.00768 4.10740 4.15591 4.24127 4.56743 4.65064 4.70280 4.79464 4.83534 5.09906 5.17764 5.21594 5.49622 5.68778 5.83183 6.22522 6.61082 6.85053 7.37817 8.91646 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.039887 B = 0.003941 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.806945 B = 7103.638730 C = 7194.426521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.013 3.987 3 C -0.232 4.232 4 S 0.287 5.713 5 C -0.362 4.362 6 S 1.440 4.560 7 O -0.889 6.889 8 C -0.445 4.445 9 C -0.088 4.088 10 C 0.027 3.973 11 C -0.548 4.548 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.258 1.258 19 N -0.454 5.454 20 H 0.079 0.921 21 H 0.106 0.894 22 H 0.058 0.942 23 H 0.220 0.780 24 H 0.057 0.943 25 H 0.143 0.857 26 H 0.098 0.902 27 H 0.036 0.964 28 H -0.024 1.024 29 H 0.009 0.991 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 18.498 13.963 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C -0.372 4.372 4 S 0.540 5.460 5 C -0.727 4.727 6 S 1.633 4.367 7 O -0.885 6.885 8 C -0.584 4.584 9 C -0.127 4.127 10 C -0.011 4.011 11 C -0.586 4.586 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.183 1.183 19 N -0.172 5.172 20 H 0.097 0.903 21 H 0.125 0.875 22 H 0.078 0.922 23 H 0.237 0.763 24 H 0.076 0.924 25 H 0.161 0.839 26 H 0.116 0.884 27 H 0.055 0.945 28 H -0.006 1.006 29 H 0.028 0.972 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.480 18.054 14.612 23.485 hybrid contribution -2.704 -1.493 -1.763 3.556 sum -6.184 16.561 12.849 21.854 Atomic orbital electron populations 1.20448 0.85647 1.04089 1.03533 1.21173 1.00128 0.87087 1.03880 1.27721 0.96523 1.05131 1.07855 1.83131 1.05223 0.95715 1.61910 1.36175 1.04320 1.16955 1.15263 1.68892 0.99467 0.82623 0.85692 1.92997 1.70630 1.54023 1.70839 1.27827 1.04131 1.06735 1.19661 1.21167 0.98194 0.94620 0.98761 1.19013 0.94423 0.95868 0.91824 1.21733 1.26363 1.17719 0.92750 0.91678 1.26011 0.98441 0.99742 0.95699 1.70097 1.45527 1.43358 0.98520 0.85485 0.79480 0.78962 0.77052 1.19745 1.20921 1.18279 1.66497 1.05389 1.33957 1.11364 0.90254 0.87496 0.92246 0.76284 0.92371 0.83858 0.88367 0.94506 1.00566 0.97217 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.31 71.24 0.73 -0.70 16 2 C 0.01 0.32 6.74 41.52 0.28 0.60 16 3 C -0.23 -3.79 11.13 66.78 0.74 -3.05 16 4 S 0.29 4.59 23.20 -56.49 -1.31 3.28 16 5 C -0.36 -9.78 7.06 130.65 0.92 -8.86 16 6 S 1.44 40.01 13.84 -56.49 -0.78 39.23 16 7 O -0.89 -37.33 17.78 -148.98 -2.65 -39.98 16 8 C -0.44 -14.94 5.88 71.98 0.42 -14.51 16 9 C -0.09 -3.62 5.16 30.59 0.16 -3.46 16 10 C 0.03 1.45 4.97 29.85 0.15 1.60 16 11 C -0.55 -31.48 9.11 25.60 0.23 -31.25 16 12 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 15 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 19 N -0.45 -14.83 10.42 -188.98 -1.97 -16.80 16 20 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.11 1.18 8.12 -2.39 -0.02 1.16 16 22 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 26 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 29 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -85.84 292.58 0.84 -85.01 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: 1.13 Total: -0.68 kcal Atomic # 6 Polarization: -63.35 SS G_CDS: 4.11 Total: -59.25 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -1.68 Total: -74.11 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -2.65 Total: -39.98 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 44.60 SS G_CDS: -2.09 Total: 42.51 kcal Total: -85.84 0.84 -85.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107976430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.117 kcal (2) G-P(sol) polarization free energy of solvation -85.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds