Wall clock time and date at job start Mon Mar 30 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33636 * 122.74982 * 2 1 4 4 S 1.76198 * 107.92520 * 179.97438 * 3 2 1 5 5 C 1.70976 * 90.28216 * 359.97438 * 4 3 2 6 6 S 1.76197 * 124.91633 * 179.97438 * 5 4 3 7 7 O 1.42109 * 102.99916 * 23.87933 * 6 5 4 8 8 C 1.81394 * 103.00405 * 270.02821 * 6 5 4 9 9 C 1.52994 * 109.47572 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47526 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47271 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99879 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99869 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00482 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99892 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47146 * 90.00122 * 15 13 11 17 17 H 1.48506 * 109.47377 * 209.99705 * 15 13 11 18 18 H 1.48500 * 109.47425 * 330.00161 * 15 13 11 19 19 N 1.29028 * 110.16507 * 359.73806 * 5 4 3 20 20 H 1.09002 * 109.47152 * 90.00090 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00190 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00171 * 1 2 3 23 23 H 1.08007 * 126.03537 * 359.97438 * 3 2 1 24 24 H 1.09004 * 109.47287 * 300.00363 * 8 6 5 25 25 H 1.09003 * 109.47435 * 59.99612 * 8 6 5 26 26 H 1.08997 * 109.47236 * 300.00106 * 9 8 6 27 27 H 1.09000 * 109.47007 * 59.99946 * 9 8 6 28 28 H 1.08997 * 109.47018 * 300.00324 * 10 9 8 29 29 H 1.09000 * 109.46953 * 59.99996 * 10 9 8 30 30 H 0.96996 * 120.00527 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 0.0018 6 16 4.6492 -2.3209 0.0023 7 8 5.8193 -1.7405 0.5623 8 6 4.9149 -2.6315 -1.7650 9 6 5.9036 -3.7863 -1.9369 10 6 6.1271 -4.0487 -3.4276 11 6 7.1015 -5.1859 -3.5969 12 1 7.5197 -5.6725 -2.7282 13 6 7.4588 -5.6050 -4.8608 14 7 6.9499 -5.0122 -5.9187 15 14 8.6671 -7.0141 -5.0707 16 1 7.9245 -8.2991 -5.1246 17 1 9.4288 -6.8294 -6.3321 18 1 9.6085 -7.0343 -3.9224 19 7 2.2199 -1.1083 0.0070 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.8391 2.1308 -0.0004 24 1 3.9664 -2.8917 -2.2348 25 1 5.3190 -1.7348 -2.2348 26 1 6.8520 -3.5257 -1.4673 27 1 5.4998 -4.6832 -1.4671 28 1 5.1786 -4.3096 -3.8968 29 1 6.5306 -3.1520 -3.8978 30 1 7.2011 -5.3073 -6.8079 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107976433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:17 Heat of formation + Delta-G solvation = -12.788399 kcal Electronic energy + Delta-G solvation = -14286.173771 eV Core-core repulsion = 11720.525187 eV Total energy + Delta-G solvation = -2565.648584 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.86654 -35.76739 -34.47405 -32.17886 -32.04228 -27.93505 -27.55767 -25.31104 -23.41294 -20.50027 -19.94708 -18.69492 -17.30328 -16.38901 -16.05305 -15.31800 -14.77144 -14.57745 -14.23685 -14.12992 -13.66429 -12.91231 -12.79099 -12.57206 -12.36778 -12.01285 -11.51607 -11.45611 -11.01669 -10.87281 -10.78742 -10.51429 -9.99123 -9.82389 -9.70625 -9.37331 -9.13637 -9.08016 -8.36374 -8.22213 -6.01083 -4.04067 0.23616 1.17502 1.43553 1.68823 2.40253 2.84553 3.32325 3.38582 3.42412 3.85884 4.32525 4.45681 4.84897 4.97490 5.34571 5.35573 5.40792 5.42615 5.54888 5.59382 5.97709 6.13600 6.45451 6.64502 7.00084 7.41016 7.64681 7.76405 7.97884 8.38815 9.02815 9.60328 11.10161 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.039529 B = 0.003987 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.164704 B = 7020.849152 C = 7277.442457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.050 3.950 3 C -0.251 4.251 4 S 0.179 5.821 5 C -0.304 4.304 6 S 1.365 4.635 7 O -0.839 6.839 8 C -0.434 4.434 9 C -0.093 4.093 10 C 0.027 3.973 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.273 1.273 19 N -0.397 5.397 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.178 0.822 24 H 0.118 0.882 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.198 9.800 12.818 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 C -0.392 4.392 4 S 0.433 5.567 5 C -0.671 4.671 6 S 1.558 4.442 7 O -0.834 6.834 8 C -0.574 4.574 9 C -0.133 4.133 10 C -0.011 4.011 11 C -0.561 4.561 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 N -0.113 5.113 20 H 0.095 0.905 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.195 0.805 24 H 0.137 0.863 25 H 0.104 0.896 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.053 9.426 13.480 20.392 hybrid contribution 0.385 1.322 -1.473 2.016 sum -11.667 10.748 12.007 19.895 Atomic orbital electron populations 1.20361 0.86714 1.03429 1.03171 1.20685 0.98682 0.86787 1.02440 1.27160 0.96559 1.04224 1.11224 1.84350 1.05906 1.02541 1.63910 1.37062 1.05531 1.12111 1.12348 1.69893 0.87543 0.96961 0.89809 1.93083 1.45687 1.74444 1.70152 1.27772 1.07586 1.06124 1.15950 1.21355 0.95574 0.93586 1.02763 1.19093 0.97114 0.96762 0.88151 1.21262 1.25897 1.16791 0.92194 0.92447 1.25025 0.96446 0.96911 0.96053 1.69963 1.44122 1.41474 0.97953 0.86578 0.81251 0.82526 0.77567 1.20555 1.21267 1.19807 1.66178 1.03175 1.31091 1.10851 0.90468 0.90876 0.90199 0.80495 0.86327 0.89555 0.92645 0.91731 0.96117 0.96636 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.05 0.57 6.74 -84.23 -0.57 0.01 16 3 C -0.25 -2.70 11.13 29.12 0.32 -2.38 16 4 S 0.18 2.39 22.84 -107.50 -2.45 -0.07 16 5 C -0.30 -4.27 7.14 51.58 0.37 -3.90 16 6 S 1.36 18.94 13.86 -107.50 -1.49 17.45 16 7 O -0.84 -15.54 17.54 -35.23 -0.62 -16.16 16 8 C -0.43 -7.11 5.88 37.15 0.22 -6.89 16 9 C -0.09 -1.86 5.16 -26.74 -0.14 -2.00 16 10 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 11 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 N -0.40 -5.29 10.53 -11.09 -0.12 -5.41 16 20 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 24 H 0.12 1.76 8.14 -51.92 -0.42 1.33 16 25 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -34.90 292.18 -8.30 -43.20 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: -3.77 Total: -5.42 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 0.03 Total: -28.36 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.62 Total: -31.64 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.62 Total: -16.16 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 21.33 SS G_CDS: -3.94 Total: 17.39 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.90 -8.30 -43.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107976433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.412 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds