Wall clock time and date at job start Mon Mar 30 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33636 * 122.74982 * 2 1 4 4 S 1.76198 * 107.92520 * 179.97438 * 3 2 1 5 5 C 1.70976 * 90.28216 * 359.97438 * 4 3 2 6 6 S 1.76197 * 124.91633 * 179.97438 * 5 4 3 7 7 O 1.42109 * 102.99916 * 23.87933 * 6 5 4 8 8 C 1.81394 * 103.00405 * 270.02821 * 6 5 4 9 9 C 1.52994 * 109.47572 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47526 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47271 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99879 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99869 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00482 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99892 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47146 * 90.00122 * 15 13 11 17 17 H 1.48506 * 109.47377 * 209.99705 * 15 13 11 18 18 H 1.48500 * 109.47425 * 330.00161 * 15 13 11 19 19 N 1.29028 * 110.16507 * 359.73806 * 5 4 3 20 20 H 1.09002 * 109.47152 * 90.00090 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00190 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00171 * 1 2 3 23 23 H 1.08007 * 126.03537 * 359.97438 * 3 2 1 24 24 H 1.09004 * 109.47287 * 300.00363 * 8 6 5 25 25 H 1.09003 * 109.47435 * 59.99612 * 8 6 5 26 26 H 1.08997 * 109.47236 * 300.00106 * 9 8 6 27 27 H 1.09000 * 109.47007 * 59.99946 * 9 8 6 28 28 H 1.08997 * 109.47018 * 300.00324 * 10 9 8 29 29 H 1.09000 * 109.46953 * 59.99996 * 10 9 8 30 30 H 0.96996 * 120.00527 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 0.0018 6 16 4.6492 -2.3209 0.0023 7 8 5.8193 -1.7405 0.5623 8 6 4.9149 -2.6315 -1.7650 9 6 5.9036 -3.7863 -1.9369 10 6 6.1271 -4.0487 -3.4276 11 6 7.1015 -5.1859 -3.5969 12 1 7.5197 -5.6725 -2.7282 13 6 7.4588 -5.6050 -4.8608 14 7 6.9499 -5.0122 -5.9187 15 14 8.6671 -7.0141 -5.0707 16 1 7.9245 -8.2991 -5.1246 17 1 9.4288 -6.8294 -6.3321 18 1 9.6085 -7.0343 -3.9224 19 7 2.2199 -1.1083 0.0070 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.8391 2.1308 -0.0004 24 1 3.9664 -2.8917 -2.2348 25 1 5.3190 -1.7348 -2.2348 26 1 6.8520 -3.5257 -1.4673 27 1 5.4998 -4.6832 -1.4671 28 1 5.1786 -4.3096 -3.8968 29 1 6.5306 -3.1520 -3.8978 30 1 7.2011 -5.3073 -6.8079 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107976433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:17 Heat of formation + Delta-G solvation = -37.664364 kcal Electronic energy + Delta-G solvation = -14287.252474 eV Core-core repulsion = 11720.525187 eV Total energy + Delta-G solvation = -2566.727287 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.81507 -37.12990 -36.33495 -34.04227 -33.01869 -29.46291 -28.68320 -26.37021 -25.29244 -22.19849 -20.95199 -19.74652 -18.63734 -18.25402 -17.21137 -16.55682 -16.40249 -16.19518 -15.48900 -15.08486 -14.71535 -14.36682 -14.11089 -13.84939 -13.45477 -13.41345 -13.14598 -12.71393 -12.65331 -12.53502 -12.31890 -12.14589 -11.62997 -11.44693 -11.24841 -10.84593 -10.64011 -10.55323 -10.08488 -9.48235 -8.19870 -6.31499 -0.78139 0.17374 0.36884 0.66670 1.38069 1.41632 1.43183 1.54269 1.75650 2.42011 2.67627 3.13490 3.45171 3.98447 4.11138 4.13863 4.18787 4.56838 4.75246 4.81859 4.82492 4.88742 5.09473 5.18334 5.33160 5.50343 5.69028 5.83628 6.22749 6.43282 6.85623 7.38178 8.91932 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.039529 B = 0.003987 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.164704 B = 7020.849152 C = 7277.442457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.031 3.969 3 C -0.224 4.224 4 S 0.142 5.858 5 C -0.332 4.332 6 S 1.441 4.559 7 O -0.885 6.885 8 C -0.441 4.441 9 C -0.087 4.087 10 C 0.027 3.973 11 C -0.546 4.546 12 H 0.065 0.935 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.264 1.264 19 N -0.396 5.396 20 H 0.085 0.915 21 H 0.098 0.902 22 H 0.082 0.918 23 H 0.215 0.785 24 H 0.134 0.866 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.005 0.995 29 H -0.019 1.019 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 9.753 13.942 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.364 4.364 4 S 0.395 5.605 5 C -0.699 4.699 6 S 1.634 4.366 7 O -0.880 6.880 8 C -0.580 4.580 9 C -0.126 4.126 10 C -0.012 4.012 11 C -0.584 4.584 12 H 0.084 0.916 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.188 1.188 19 N -0.113 5.113 20 H 0.104 0.896 21 H 0.117 0.883 22 H 0.101 0.899 23 H 0.232 0.768 24 H 0.152 0.848 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.023 0.977 29 H -0.001 1.001 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.420 9.353 14.601 21.926 hybrid contribution 0.654 1.487 -1.799 2.423 sum -12.766 10.839 12.803 21.080 Atomic orbital electron populations 1.20506 0.83873 1.04910 1.04157 1.21340 1.00451 0.86321 1.02324 1.27597 0.94294 1.05856 1.08652 1.84506 1.08764 1.02746 1.64514 1.36652 1.05854 1.12251 1.15118 1.69368 0.85304 0.95922 0.85984 1.92975 1.48240 1.76195 1.70637 1.27780 1.07154 1.03931 1.19103 1.21153 0.96431 0.96336 0.98725 1.19017 0.95635 0.94689 0.91834 1.21756 1.26412 1.17470 0.92741 0.91645 1.26005 0.98397 0.99798 0.95723 1.70100 1.45686 1.43245 0.98522 0.85430 0.78766 0.79136 0.77629 1.19200 1.21055 1.18817 1.66197 1.02803 1.32318 1.09961 0.89627 0.88283 0.89941 0.76837 0.84782 0.91419 0.93745 0.88898 0.97690 1.00076 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.31 71.24 0.73 -0.17 16 2 C 0.03 0.63 6.74 41.52 0.28 0.91 16 3 C -0.22 -4.18 11.13 66.78 0.74 -3.43 16 4 S 0.14 3.67 22.84 -56.49 -1.29 2.38 16 5 C -0.33 -9.01 7.14 130.65 0.93 -8.08 16 6 S 1.44 39.42 13.86 -56.49 -0.78 38.64 16 7 O -0.89 -32.97 17.54 -148.98 -2.61 -35.58 16 8 C -0.44 -14.62 5.88 71.98 0.42 -14.19 16 9 C -0.09 -3.54 5.16 30.59 0.16 -3.38 16 10 C 0.03 1.42 4.97 29.85 0.15 1.57 16 11 C -0.55 -31.24 9.11 25.60 0.23 -31.00 16 12 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 13 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 14 N -0.94 -57.49 13.29 21.44 0.28 -57.21 16 15 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 19 N -0.40 -9.86 10.53 -188.98 -1.99 -11.85 16 20 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.10 0.69 8.12 -2.39 -0.02 0.67 16 22 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.21 2.27 8.06 -2.91 -0.02 2.24 16 24 H 0.13 3.95 8.14 -2.39 -0.02 3.93 16 25 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 29 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -76.37 292.18 0.88 -75.49 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: 1.13 Total: -0.88 kcal Atomic # 6 Polarization: -61.53 SS G_CDS: 4.11 Total: -57.42 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -1.71 Total: -69.06 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -2.61 Total: -35.58 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 43.10 SS G_CDS: -2.07 Total: 41.02 kcal Total: -76.37 0.88 -75.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107976433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.824 kcal (2) G-P(sol) polarization free energy of solvation -76.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds