Wall clock time and date at job start Mon Mar 30 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00737 * 2 1 4 4 H 1.48502 * 109.47358 * 270.00638 * 3 2 1 5 5 H 1.48508 * 109.46762 * 30.00127 * 3 2 1 6 6 H 1.48493 * 109.47304 * 150.00080 * 3 2 1 7 7 C 1.37878 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00418 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00158 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.35951 * 116.99877 * 179.97438 * 10 9 7 12 12 C 1.38645 * 120.04883 * 0.02562 * 11 10 9 13 13 C 1.38377 * 119.94597 * 180.02562 * 12 11 10 14 14 F 1.35103 * 119.97665 * 179.97438 * 13 12 11 15 15 C 1.38472 * 120.04293 * 359.97438 * 13 12 11 16 16 N 1.48026 * 119.94829 * 180.02562 * 15 13 12 17 17 O 1.21803 * 120.00204 * 180.02562 * 16 15 13 18 18 O 1.21795 * 119.99880 * 0.02562 * 16 15 13 19 19 C 1.38238 * 120.10477 * 0.04238 * 15 13 12 20 20 C 1.38328 * 120.05251 * 359.95529 * 19 15 13 21 21 F 1.35099 * 120.02805 * 180.02562 * 20 19 15 22 22 H 0.97006 * 119.99905 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46798 * 59.99974 * 9 7 2 24 24 H 1.08993 * 109.46851 * 299.99841 * 9 7 2 25 25 H 1.08002 * 120.02755 * 359.74938 * 12 11 10 26 26 H 1.07994 * 119.97930 * 179.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 8 2.1794 -3.5854 -0.0017 11 6 1.6597 -4.8417 -0.0014 12 6 0.2853 -5.0244 -0.0004 13 6 -0.2413 -6.3041 0.0005 14 9 -1.5805 -6.4829 0.0020 15 6 0.6033 -7.4014 0.0000 16 7 0.0376 -8.7693 0.0004 17 8 0.7796 -9.7352 0.0003 18 8 -1.1698 -8.9290 0.0008 19 6 1.9739 -7.2214 -0.0007 20 6 2.5048 -5.9441 -0.0016 21 9 3.8444 -5.7688 -0.0028 22 1 -0.4850 0.8401 0.0004 23 1 0.6238 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 -0.3737 -4.1688 0.0041 26 1 2.6307 -8.0786 -0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110623997.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:24 Heat of formation + Delta-G solvation = -109.556264 kcal Electronic energy + Delta-G solvation = -18614.655879 eV Core-core repulsion = 14912.384773 eV Total energy + Delta-G solvation = -3702.271106 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.37132 -48.98117 -42.09272 -39.98466 -37.44194 -36.51601 -33.27618 -31.41328 -30.67982 -28.27106 -26.07546 -24.25369 -22.72947 -22.25580 -19.59402 -18.87583 -18.42063 -17.64799 -17.52582 -17.10895 -16.50811 -16.30998 -15.64574 -15.64197 -14.82220 -14.81821 -14.60215 -14.40425 -13.44358 -12.74226 -12.42409 -12.30494 -11.79449 -11.56962 -11.34892 -11.27436 -11.13510 -11.12775 -10.81962 -10.47648 -9.70355 -9.39819 -8.93488 -8.50508 -6.52846 -4.59461 -0.23176 0.48626 1.24554 1.28261 2.87226 3.08562 3.10107 3.16474 3.26847 3.48862 3.80341 4.07891 4.15669 4.36769 4.85464 4.86569 5.02661 5.21276 5.40541 5.62800 5.99890 6.26432 6.38282 6.63219 7.24132 7.55400 7.64078 7.73506 8.49160 9.07729 10.57941 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.035793 B = 0.004932 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.084530 B = 5675.527332 C = 6442.467703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.919 3.081 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.181 3.819 10 O -0.278 6.278 11 C 0.208 3.792 12 C -0.234 4.234 13 C 0.212 3.788 14 F -0.098 7.098 15 C -0.122 4.122 16 N 0.044 4.956 17 O -0.168 6.168 18 O -0.157 6.157 19 C -0.032 4.032 20 C 0.050 3.950 21 F -0.113 7.113 22 H 0.272 0.728 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.180 0.820 26 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 -10.181 0.004 10.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.094 0.906 9 C 0.110 3.890 10 O -0.187 6.187 11 C 0.154 3.846 12 C -0.254 4.254 13 C 0.191 3.809 14 F -0.076 7.076 15 C -0.209 4.209 16 N 0.561 4.439 17 O -0.381 6.381 18 O -0.373 6.373 19 C -0.051 4.051 20 C 0.029 3.971 21 F -0.091 7.091 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.197 0.803 26 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.691 -9.293 0.008 9.445 hybrid contribution -0.091 0.615 -0.009 0.622 sum 1.600 -8.677 -0.001 8.823 Atomic orbital electron populations 1.69915 1.06190 1.28289 1.48328 1.24942 0.95134 0.99748 0.94072 0.86150 0.79610 0.81147 0.78629 1.20048 1.20681 1.19307 1.20875 0.94500 0.87950 1.53889 0.90632 1.21146 0.88664 0.81131 0.98076 1.86363 1.39574 1.10811 1.81990 1.19338 0.90536 0.87642 0.87058 1.21359 0.95369 0.96922 1.11793 1.16972 0.77741 0.91452 0.94758 1.91674 1.27920 1.95897 1.92104 1.20506 0.93565 0.81663 1.25121 1.43123 1.00944 1.02233 0.97562 1.94518 1.58313 1.31002 1.54259 1.94597 0.96768 1.92257 1.53633 1.20441 0.92557 0.97523 0.94624 1.16458 0.78326 0.90423 1.11876 1.91580 1.27512 1.95770 1.94248 0.91855 0.94708 0.94697 0.80290 0.80726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 13.29 55.43 0.74 -22.82 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.92 19.69 29.54 -169.99 -5.02 14.67 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 15 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 15 7 C -0.53 -13.70 9.43 -34.44 -0.32 -14.03 15 8 H 0.08 1.93 7.81 -52.49 -0.41 1.52 15 9 C 0.18 4.12 4.49 36.01 0.16 4.28 15 10 O -0.28 -5.65 9.98 -19.59 -0.20 -5.84 15 11 C 0.21 3.42 6.69 -39.18 -0.26 3.16 15 12 C -0.23 -3.55 9.01 -39.38 -0.35 -3.90 15 13 C 0.21 3.10 7.25 -39.44 -0.29 2.81 15 14 F -0.10 -1.48 15.47 2.25 0.03 -1.45 15 15 C -0.12 -1.74 6.86 -79.86 -0.55 -2.29 15 16 N 0.04 0.68 4.45 34.01 0.15 0.84 15 17 O -0.17 -2.54 18.44 -29.46 -0.54 -3.08 15 18 O -0.16 -2.59 17.41 -29.46 -0.51 -3.10 15 19 C -0.03 -0.40 9.53 -39.55 -0.38 -0.78 15 20 C 0.05 0.73 7.31 -39.30 -0.29 0.44 15 21 F -0.11 -1.71 17.11 2.25 0.04 -1.67 15 22 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 23 H 0.04 0.80 7.67 -51.93 -0.40 0.40 15 24 H 0.04 0.80 7.66 -51.93 -0.40 0.41 15 25 H 0.18 2.74 6.30 -52.49 -0.33 2.41 15 26 H 0.18 1.77 7.61 -52.49 -0.40 1.37 15 LS Contribution 258.40 15.07 3.89 3.89 Total: -1.00 -26.16 258.40 -4.86 -31.02 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -1.07 Total: -3.71 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.37 Total: -8.75 kcal Atomic # 7 Polarization: -22.87 SS G_CDS: 0.89 Total: -21.98 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -1.25 Total: -12.02 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.16 -4.86 -31.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110623997.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.536 kcal (2) G-P(sol) polarization free energy of solvation -26.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds