Wall clock time and date at job start Mon Mar 30 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00737 * 2 1 4 4 H 1.48502 * 109.47358 * 270.00638 * 3 2 1 5 5 H 1.48508 * 109.46762 * 30.00127 * 3 2 1 6 6 H 1.48493 * 109.47304 * 150.00080 * 3 2 1 7 7 C 1.37878 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00418 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00158 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.35951 * 116.99877 * 179.97438 * 10 9 7 12 12 C 1.38645 * 120.04883 * 0.02562 * 11 10 9 13 13 C 1.38377 * 119.94597 * 180.02562 * 12 11 10 14 14 F 1.35103 * 119.97665 * 179.97438 * 13 12 11 15 15 C 1.38472 * 120.04293 * 359.97438 * 13 12 11 16 16 N 1.48026 * 119.94829 * 180.02562 * 15 13 12 17 17 O 1.21803 * 120.00204 * 180.02562 * 16 15 13 18 18 O 1.21795 * 119.99880 * 0.02562 * 16 15 13 19 19 C 1.38238 * 120.10477 * 0.04238 * 15 13 12 20 20 C 1.38328 * 120.05251 * 359.95529 * 19 15 13 21 21 F 1.35099 * 120.02805 * 180.02562 * 20 19 15 22 22 H 0.97006 * 119.99905 * 359.97438 * 1 2 3 23 23 H 1.09007 * 109.46798 * 59.99974 * 9 7 2 24 24 H 1.08993 * 109.46851 * 299.99841 * 9 7 2 25 25 H 1.08002 * 120.02755 * 359.74938 * 12 11 10 26 26 H 1.07994 * 119.97930 * 179.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 8 2.1794 -3.5854 -0.0017 11 6 1.6597 -4.8417 -0.0014 12 6 0.2853 -5.0244 -0.0004 13 6 -0.2413 -6.3041 0.0005 14 9 -1.5805 -6.4829 0.0020 15 6 0.6033 -7.4014 0.0000 16 7 0.0376 -8.7693 0.0004 17 8 0.7796 -9.7352 0.0003 18 8 -1.1698 -8.9290 0.0008 19 6 1.9739 -7.2214 -0.0007 20 6 2.5048 -5.9441 -0.0016 21 9 3.8444 -5.7688 -0.0028 22 1 -0.4850 0.8401 0.0004 23 1 0.6238 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 -0.3737 -4.1688 0.0041 26 1 2.6307 -8.0786 -0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110623997.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:24 Heat of formation + Delta-G solvation = -122.973589 kcal Electronic energy + Delta-G solvation = -18615.237698 eV Core-core repulsion = 14912.384773 eV Total energy + Delta-G solvation = -3702.852925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.59074 -50.18365 -43.32303 -41.34509 -38.81537 -37.75254 -35.17482 -32.69839 -31.93559 -30.00431 -27.41199 -25.78886 -24.09986 -23.63935 -20.81532 -20.12184 -19.82225 -18.94963 -18.87041 -18.44711 -18.13080 -17.60909 -17.08075 -16.89228 -16.40696 -16.28453 -15.83832 -15.69470 -14.90672 -14.15184 -13.77285 -13.65659 -13.37072 -13.02868 -12.96640 -12.80932 -12.40959 -12.39540 -12.36721 -12.21148 -11.55380 -10.81569 -10.59089 -9.88388 -8.46137 -6.60020 -1.46947 -0.68690 -0.00216 0.05795 1.40114 1.40946 1.52162 1.65773 1.81924 2.26442 2.34671 2.57902 2.90932 2.91413 3.11786 3.68343 3.89148 4.02906 4.15733 4.39880 4.53216 4.79947 4.80981 5.12841 5.39841 5.67284 6.06052 6.38704 6.54077 7.11663 8.65033 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.035793 B = 0.004932 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.084530 B = 5675.527332 C = 6442.467703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.982 3.018 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.195 3.805 10 O -0.298 6.298 11 C 0.188 3.812 12 C -0.227 4.227 13 C 0.213 3.787 14 F -0.101 7.101 15 C -0.116 4.116 16 N 0.043 4.957 17 O -0.140 6.140 18 O -0.191 6.191 19 C -0.004 4.004 20 C 0.057 3.943 21 F -0.114 7.114 22 H 0.276 0.724 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.173 0.827 26 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.396 -10.979 -0.006 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.598 4.598 8 H 0.088 0.912 9 C 0.123 3.877 10 O -0.209 6.209 11 C 0.136 3.864 12 C -0.247 4.247 13 C 0.192 3.808 14 F -0.079 7.079 15 C -0.202 4.202 16 N 0.559 4.441 17 O -0.361 6.361 18 O -0.397 6.397 19 C -0.023 4.023 20 C 0.036 3.964 21 F -0.093 7.093 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.191 0.809 26 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.626 -10.090 -0.002 10.426 hybrid contribution -0.362 0.662 -0.006 0.755 sum 2.265 -9.428 -0.009 9.696 Atomic orbital electron populations 1.69998 1.07480 1.29290 1.48941 1.25810 0.95948 1.03002 0.93390 0.85185 0.78440 0.77026 0.78891 1.19341 1.20035 1.18849 1.21238 0.94592 0.89702 1.54282 0.91207 1.20721 0.88402 0.81458 0.97126 1.86282 1.39121 1.11748 1.83716 1.19533 0.91394 0.86750 0.88700 1.21210 0.94873 0.97093 1.11496 1.16923 0.77696 0.91357 0.94870 1.91670 1.28234 1.95872 1.92130 1.20588 0.94032 0.81073 1.24505 1.43207 1.00891 1.02469 0.97485 1.94502 1.58059 1.31147 1.52396 1.94626 0.97091 1.92423 1.55559 1.20657 0.92066 0.97625 0.91945 1.16422 0.78004 0.90299 1.11656 1.91583 1.27614 1.95805 1.94266 0.91538 0.95620 0.95600 0.80922 0.77299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.11 13.29 21.45 0.28 -48.83 15 2 C 0.02 0.99 5.46 84.66 0.46 1.45 15 3 Si 0.98 40.08 29.54 68.60 2.03 42.11 15 4 H -0.27 -10.61 7.11 99.48 0.71 -9.90 15 5 H -0.28 -10.88 7.11 99.48 0.71 -10.18 15 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 7 C -0.56 -29.19 9.43 25.60 0.24 -28.95 15 8 H 0.07 3.61 7.81 -2.91 -0.02 3.59 15 9 C 0.20 9.10 4.49 71.24 0.32 9.42 15 10 O -0.30 -12.26 9.98 -93.00 -0.93 -13.19 15 11 C 0.19 6.10 6.69 22.53 0.15 6.25 15 12 C -0.23 -6.83 9.01 22.40 0.20 -6.62 15 13 C 0.21 5.99 7.25 22.36 0.16 6.15 15 14 F -0.10 -3.00 15.47 44.97 0.70 -2.31 15 15 C -0.12 -3.02 6.86 36.43 0.25 -2.77 15 16 N 0.04 1.21 4.45 -46.32 -0.21 1.01 15 17 O -0.14 -3.74 18.44 18.88 0.35 -3.39 15 18 O -0.19 -6.01 17.41 18.89 0.33 -5.68 15 19 C 0.00 -0.08 9.53 22.29 0.21 0.13 15 20 C 0.06 1.54 7.31 22.45 0.16 1.71 15 21 F -0.11 -3.24 17.11 44.97 0.77 -2.47 15 22 H 0.28 13.77 8.31 -92.70 -0.77 13.00 15 23 H 0.03 1.23 7.67 -2.38 -0.02 1.21 15 24 H 0.03 1.24 7.66 -2.39 -0.02 1.22 15 25 H 0.17 5.44 6.30 -2.91 -0.02 5.43 15 26 H 0.21 3.20 7.61 -2.91 -0.02 3.18 15 Total: -1.00 -54.95 258.40 6.73 -48.22 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: 1.25 Total: -2.25 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 2.16 Total: -13.23 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.08 Total: -47.82 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.25 Total: -22.26 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 1.47 Total: -4.77 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -54.95 6.73 -48.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110623997.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.758 kcal (2) G-P(sol) polarization free energy of solvation -54.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds